Wall clock time and date at job start Tue Mar 31 2020 13:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99922 * 2 1 4 4 H 1.48504 * 109.47459 * 270.00072 * 3 2 1 5 5 H 1.48497 * 109.47244 * 29.99780 * 3 2 1 6 6 H 1.48496 * 109.47354 * 149.99780 * 3 2 1 7 7 C 1.38809 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00299 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.47553 * 125.85882 * 0.02683 * 9 7 2 11 11 C 1.55062 * 104.84934 * 156.09175 * 10 9 7 12 12 C 1.55060 * 101.27364 * 35.96942 * 11 10 9 13 13 H 1.09003 * 106.67964 * 78.29795 * 12 11 10 14 14 C 1.48863 * 111.54655 * 194.53072 * 12 11 10 15 15 C 1.50611 * 117.90382 * 101.50851 * 14 12 11 16 16 N 1.45230 * 112.83719 * 27.69057 * 15 14 12 17 17 C 1.34774 * 119.33953 * 135.99506 * 16 15 14 18 18 O 1.21741 * 120.00093 * 354.31879 * 17 16 15 19 19 C 1.46289 * 119.99795 * 174.32283 * 17 16 15 20 20 S 1.75824 * 125.46566 * 318.44681 * 19 17 16 21 21 C 1.70606 * 91.60864 * 179.97438 * 20 19 17 22 22 C 1.33732 * 111.03503 * 0.32668 * 21 20 19 23 23 C 1.36926 * 125.46187 * 138.75708 * 19 17 16 24 24 F 1.35096 * 123.40929 * 359.95320 * 23 19 17 25 25 C 1.44680 * 120.74090 * 315.60087 * 16 15 14 26 26 C 1.47631 * 125.85677 * 180.02562 * 9 7 2 27 27 H 1.08999 * 108.10325 * 64.74560 * 26 9 7 28 28 H 0.97001 * 120.00222 * 0.02562 * 1 2 3 29 29 H 1.08992 * 110.36166 * 37.25049 * 10 9 7 30 30 H 1.09003 * 110.45058 * 274.98086 * 10 9 7 31 31 H 1.09006 * 111.06860 * 153.97611 * 11 10 9 32 32 H 1.08998 * 111.07210 * 277.95811 * 11 10 9 33 33 H 1.09001 * 107.75681 * 223.64709 * 14 12 11 34 34 H 1.09001 * 107.75103 * 339.42090 * 14 12 11 35 35 H 1.09000 * 108.80715 * 148.55383 * 15 14 12 36 36 H 1.08999 * 108.81164 * 266.82294 * 15 14 12 37 37 H 1.07992 * 124.48185 * 180.02562 * 21 20 19 38 38 H 1.08005 * 122.45129 * 179.71656 * 22 21 20 39 39 H 1.09000 * 109.26544 * 288.39912 * 25 16 15 40 40 H 1.09010 * 108.17180 * 170.05665 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1422 -2.5386 -0.0006 11 6 -0.3972 -3.9425 -0.6076 12 6 0.8022 -4.7422 -0.0363 13 1 0.5542 -4.9823 0.9976 14 6 0.9834 -6.0379 -0.7464 15 6 2.0719 -6.1271 -1.7835 16 7 3.1716 -5.2140 -1.5264 17 6 4.4390 -5.6519 -1.6618 18 8 4.6553 -6.8270 -1.8950 19 6 5.5547 -4.7152 -1.5285 20 16 5.6028 -3.0856 -2.1871 21 6 7.1675 -2.8262 -1.5584 22 6 7.6085 -3.9076 -0.9069 23 6 6.7313 -4.9689 -0.8758 24 9 7.0045 -6.1419 -0.2638 25 6 2.9193 -3.8437 -1.1367 26 6 1.9294 -3.7352 0.0016 27 1 2.4706 -3.8630 0.9391 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6020 -1.7685 -0.6198 30 1 -0.5309 -2.4888 1.0166 31 1 -1.3443 -4.3542 -0.2587 32 1 -0.3638 -3.9106 -1.6966 33 1 1.1759 -6.8043 0.0043 34 1 0.0400 -6.2847 -1.2334 35 1 2.4581 -7.1462 -1.8009 36 1 1.6461 -5.8982 -2.7605 37 1 7.7295 -1.9115 -1.6756 38 1 8.5813 -3.9459 -0.4394 39 1 2.5349 -3.2909 -1.9939 40 1 3.8650 -3.3989 -0.8264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042039167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:18 Heat of formation + Delta-G solvation = -3.014205 kcal Electronic energy + Delta-G solvation = -26149.798879 eV Core-core repulsion = 22393.014484 eV Total energy + Delta-G solvation = -3756.784395 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.86392 -40.32536 -38.39701 -37.26086 -35.29739 -33.50031 -31.84234 -30.06653 -29.15899 -28.49207 -25.56571 -24.53779 -24.16080 -22.64136 -21.09729 -20.32935 -19.68099 -18.67581 -17.43402 -17.03959 -16.65234 -16.59985 -15.76829 -15.35970 -15.09636 -14.98670 -14.70999 -14.56100 -14.11802 -13.90757 -13.60267 -13.46304 -12.91124 -12.66615 -12.46484 -12.16860 -11.88754 -11.77356 -11.75136 -11.37812 -11.11498 -10.98606 -10.91535 -10.73555 -10.21637 -10.11558 -10.01349 -9.92069 -9.69886 -9.45797 -8.96897 -8.75587 -8.43168 -8.34330 -6.96816 -5.74506 -3.17145 0.38185 1.21857 1.71441 2.14185 2.88995 3.25635 3.32120 3.37464 3.40014 4.21692 4.36485 4.58630 4.85542 4.94343 5.05783 5.15307 5.21330 5.28599 5.47525 5.50808 5.52788 5.64871 5.72396 5.79180 5.82035 5.96596 6.10855 6.15680 6.20063 6.23981 6.34492 6.55565 6.57113 6.72662 6.79208 6.93918 7.44408 7.50483 7.55044 7.77342 8.19319 8.25913 9.11217 9.71827 10.37160 11.29292 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.005830 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.667228 B = 4801.401716 C = 6767.136930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.151 3.849 11 C -0.141 4.141 12 C -0.090 4.090 13 H 0.061 0.939 14 C -0.112 4.112 15 C 0.118 3.882 16 N -0.587 5.587 17 C 0.590 3.410 18 O -0.533 6.533 19 C -0.314 4.314 20 S 0.299 5.701 21 C -0.227 4.227 22 C -0.178 4.178 23 C 0.149 3.851 24 F -0.113 7.113 25 C 0.089 3.911 26 C 0.166 3.834 27 H 0.028 0.972 28 H 0.253 0.747 29 H 0.106 0.894 30 H 0.014 0.986 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.179 0.821 38 H 0.155 0.845 39 H 0.077 0.923 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 -7.084 -4.211 11.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.026 3.974 11 C -0.180 4.180 12 C -0.110 4.110 13 H 0.080 0.920 14 C -0.151 4.151 15 C -0.005 4.005 16 N -0.318 5.318 17 C 0.377 3.623 18 O -0.412 6.412 19 C -0.436 4.436 20 S 0.567 5.433 21 C -0.365 4.365 22 C -0.210 4.210 23 C 0.114 3.886 24 F -0.091 7.091 25 C -0.037 4.037 26 C 0.058 3.942 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.123 0.877 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.196 0.804 38 H 0.172 0.828 39 H 0.095 0.905 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.253 -6.580 -5.119 11.050 hybrid contribution 1.615 -0.017 1.239 2.036 sum 8.868 -6.597 -3.880 11.714 Atomic orbital electron populations 1.69808 1.04896 1.24899 1.57002 1.24768 0.95667 0.97624 1.02143 0.86154 0.78686 0.83518 0.77657 1.21450 1.21607 1.20630 1.19014 0.90444 0.82158 1.43743 0.90403 1.44764 1.01801 0.98751 1.86421 1.21960 0.84341 0.92735 0.98362 1.23215 0.95788 0.98926 1.00065 1.20449 0.96933 0.93653 0.99951 0.92014 1.20414 0.98621 0.97728 0.98290 1.20678 0.86879 0.94709 0.98244 1.46966 1.04888 1.13241 1.66744 1.16775 0.81749 0.86470 0.77292 1.90811 1.84319 1.16486 1.49577 1.24572 1.00627 1.02673 1.15723 1.83741 1.08176 1.02680 1.48699 1.25282 1.02756 1.03634 1.04821 1.19734 1.02474 0.92444 1.06392 1.16786 0.92336 0.83307 0.96168 1.91534 1.93483 1.44096 1.80011 1.21919 1.01393 0.79869 1.00484 1.19930 0.92154 0.87310 0.94825 0.95476 0.93635 0.87665 0.96798 0.92267 0.92218 0.92440 0.90760 0.89200 0.92121 0.80377 0.82766 0.90503 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.30 10.12 55.49 0.56 -24.73 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.23 -5.73 9.77 -15.06 -0.15 -5.88 16 8 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.59 -13.93 3.16 -164.74 -0.52 -14.45 16 10 C 0.15 3.44 5.91 -2.38 -0.01 3.42 16 11 C -0.14 -2.51 6.24 -24.55 -0.15 -2.66 16 12 C -0.09 -1.53 2.63 -92.47 -0.24 -1.78 16 13 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 14 C -0.11 -1.56 5.55 -29.95 -0.17 -1.73 16 15 C 0.12 1.73 6.36 -5.92 -0.04 1.69 16 16 N -0.59 -9.77 3.03 -180.32 -0.55 -10.32 16 17 C 0.59 10.40 7.42 -13.03 -0.10 10.31 16 18 O -0.53 -10.62 16.21 5.15 0.08 -10.53 16 19 C -0.31 -4.93 5.27 -36.82 -0.19 -5.12 16 20 S 0.30 3.82 20.14 -107.50 -2.16 1.66 16 21 C -0.23 -2.40 10.91 29.15 0.32 -2.08 16 22 C -0.18 -2.07 10.15 -41.35 -0.42 -2.49 16 23 C 0.15 2.22 7.47 -40.24 -0.30 1.92 16 24 F -0.11 -1.84 17.09 2.25 0.04 -1.80 16 25 C 0.09 1.58 4.56 -5.90 -0.03 1.55 16 26 C 0.17 3.28 3.29 -69.10 -0.23 3.05 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.11 2.70 5.91 -51.93 -0.31 2.40 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.07 0.90 7.65 -51.93 -0.40 0.50 16 35 H 0.09 1.33 6.87 -51.93 -0.36 0.97 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 40 H 0.08 1.35 4.53 -38.91 -0.18 1.18 16 LS Contribution 333.85 15.07 5.03 5.03 Total: -1.00 -29.98 333.85 -9.35 -39.33 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.00 Total: 0.23 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -1.80 Total: -0.06 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.50 Total: -49.50 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.16 Total: 1.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.98 -9.35 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042039167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.317 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds