Wall clock time and date at job start Tue Mar 31 2020 13:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99922 * 2 1 4 4 H 1.48504 * 109.47459 * 270.00072 * 3 2 1 5 5 H 1.48497 * 109.47244 * 29.99780 * 3 2 1 6 6 H 1.48496 * 109.47354 * 149.99780 * 3 2 1 7 7 C 1.38809 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00299 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.47553 * 125.85882 * 0.02683 * 9 7 2 11 11 C 1.55062 * 104.84934 * 156.09175 * 10 9 7 12 12 C 1.55060 * 101.27364 * 35.96942 * 11 10 9 13 13 H 1.09003 * 106.67964 * 78.29795 * 12 11 10 14 14 C 1.48863 * 111.54655 * 194.53072 * 12 11 10 15 15 C 1.50611 * 117.90382 * 101.50851 * 14 12 11 16 16 N 1.45230 * 112.83719 * 27.69057 * 15 14 12 17 17 C 1.34774 * 119.33953 * 135.99506 * 16 15 14 18 18 O 1.21741 * 120.00093 * 354.31879 * 17 16 15 19 19 C 1.46289 * 119.99795 * 174.32283 * 17 16 15 20 20 S 1.75824 * 125.46566 * 318.44681 * 19 17 16 21 21 C 1.70606 * 91.60864 * 179.97438 * 20 19 17 22 22 C 1.33732 * 111.03503 * 0.32668 * 21 20 19 23 23 C 1.36926 * 125.46187 * 138.75708 * 19 17 16 24 24 F 1.35096 * 123.40929 * 359.95320 * 23 19 17 25 25 C 1.44680 * 120.74090 * 315.60087 * 16 15 14 26 26 C 1.47631 * 125.85677 * 180.02562 * 9 7 2 27 27 H 1.08999 * 108.10325 * 64.74560 * 26 9 7 28 28 H 0.97001 * 120.00222 * 0.02562 * 1 2 3 29 29 H 1.08992 * 110.36166 * 37.25049 * 10 9 7 30 30 H 1.09003 * 110.45058 * 274.98086 * 10 9 7 31 31 H 1.09006 * 111.06860 * 153.97611 * 11 10 9 32 32 H 1.08998 * 111.07210 * 277.95811 * 11 10 9 33 33 H 1.09001 * 107.75681 * 223.64709 * 14 12 11 34 34 H 1.09001 * 107.75103 * 339.42090 * 14 12 11 35 35 H 1.09000 * 108.80715 * 148.55383 * 15 14 12 36 36 H 1.08999 * 108.81164 * 266.82294 * 15 14 12 37 37 H 1.07992 * 124.48185 * 180.02562 * 21 20 19 38 38 H 1.08005 * 122.45129 * 179.71656 * 22 21 20 39 39 H 1.09000 * 109.26544 * 288.39912 * 25 16 15 40 40 H 1.09010 * 108.17180 * 170.05665 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1422 -2.5386 -0.0006 11 6 -0.3972 -3.9425 -0.6076 12 6 0.8022 -4.7422 -0.0363 13 1 0.5542 -4.9823 0.9976 14 6 0.9834 -6.0379 -0.7464 15 6 2.0719 -6.1271 -1.7835 16 7 3.1716 -5.2140 -1.5264 17 6 4.4390 -5.6519 -1.6618 18 8 4.6553 -6.8270 -1.8950 19 6 5.5547 -4.7152 -1.5285 20 16 5.6028 -3.0856 -2.1871 21 6 7.1675 -2.8262 -1.5584 22 6 7.6085 -3.9076 -0.9069 23 6 6.7313 -4.9689 -0.8758 24 9 7.0045 -6.1419 -0.2638 25 6 2.9193 -3.8437 -1.1367 26 6 1.9294 -3.7352 0.0016 27 1 2.4706 -3.8630 0.9391 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6020 -1.7685 -0.6198 30 1 -0.5309 -2.4888 1.0166 31 1 -1.3443 -4.3542 -0.2587 32 1 -0.3638 -3.9106 -1.6966 33 1 1.1759 -6.8043 0.0043 34 1 0.0400 -6.2847 -1.2334 35 1 2.4581 -7.1462 -1.8009 36 1 1.6461 -5.8982 -2.7605 37 1 7.7295 -1.9115 -1.6756 38 1 8.5813 -3.9459 -0.4394 39 1 2.5349 -3.2909 -1.9939 40 1 3.8650 -3.3989 -0.8264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042039167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:18 Heat of formation + Delta-G solvation = -20.002280 kcal Electronic energy + Delta-G solvation = -26150.535538 eV Core-core repulsion = 22393.014484 eV Total energy + Delta-G solvation = -3757.521054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.05504 -41.69079 -39.84851 -38.31157 -36.81020 -35.04300 -33.48958 -31.35057 -30.66104 -30.03090 -26.94391 -26.07131 -25.49877 -23.97047 -22.40379 -22.01769 -20.79865 -19.91654 -18.87189 -18.67910 -17.96470 -17.85676 -17.02022 -16.76200 -16.55448 -16.45736 -16.20269 -15.64530 -15.53031 -15.13706 -14.93054 -14.78470 -14.33143 -14.05021 -13.87926 -13.49355 -13.40456 -13.28724 -13.00417 -12.83872 -12.67356 -12.61202 -12.21536 -12.11241 -11.97446 -11.66857 -11.58088 -11.44345 -11.17216 -10.99911 -10.68898 -10.06488 -9.70466 -9.45178 -8.87550 -7.71859 -5.16485 -0.67052 0.17033 0.75651 1.14131 1.51673 1.52909 1.60619 1.61794 1.97868 2.52859 3.20482 3.29153 3.38248 3.60241 3.68139 3.80621 3.90289 4.00474 4.11407 4.26315 4.31316 4.37131 4.41674 4.62216 4.67194 4.70680 4.80714 4.85897 4.87387 4.94953 5.09667 5.15338 5.19525 5.33065 5.45946 5.48952 5.57666 5.70246 5.86026 6.16005 6.34214 6.86924 7.14331 7.80682 8.45780 9.30523 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.005830 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.667228 B = 4801.401716 C = 6767.136930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.267 1.267 7 C -0.228 4.228 8 H 0.087 0.913 9 N -0.609 5.609 10 C 0.151 3.849 11 C -0.124 4.124 12 C -0.083 4.083 13 H 0.060 0.940 14 C -0.107 4.107 15 C 0.111 3.889 16 N -0.586 5.586 17 C 0.588 3.412 18 O -0.565 6.565 19 C -0.353 4.353 20 S 0.300 5.700 21 C -0.200 4.200 22 C -0.183 4.183 23 C 0.138 3.862 24 F -0.127 7.127 25 C 0.106 3.894 26 C 0.162 3.838 27 H 0.010 0.990 28 H 0.245 0.755 29 H 0.075 0.925 30 H -0.015 1.015 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.219 0.781 38 H 0.184 0.816 39 H 0.068 0.932 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.717 -7.072 -4.794 12.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.798 3.202 4 H -0.208 1.208 5 H -0.229 1.229 6 H -0.192 1.192 7 C -0.357 4.357 8 H 0.105 0.895 9 N -0.334 5.334 10 C 0.026 3.974 11 C -0.162 4.162 12 C -0.103 4.103 13 H 0.079 0.921 14 C -0.145 4.145 15 C -0.011 4.011 16 N -0.317 5.317 17 C 0.376 3.624 18 O -0.446 6.446 19 C -0.474 4.474 20 S 0.568 5.432 21 C -0.337 4.337 22 C -0.213 4.213 23 C 0.102 3.898 24 F -0.106 7.106 25 C -0.020 4.020 26 C 0.055 3.945 27 H 0.028 0.972 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.003 0.997 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.236 0.764 38 H 0.202 0.798 39 H 0.086 0.914 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.763 -6.596 -5.706 12.363 hybrid contribution 1.201 -0.011 1.453 1.885 sum 9.964 -6.607 -4.253 12.689 Atomic orbital electron populations 1.70054 1.06241 1.24866 1.58636 1.25538 0.96441 1.00669 1.02864 0.85210 0.77832 0.79482 0.77708 1.20786 1.22854 1.19151 1.19393 0.91088 0.83031 1.42171 0.89508 1.44994 1.02324 0.99784 1.86282 1.21769 0.84036 0.95122 0.96497 1.23074 0.97365 0.95621 1.00160 1.20430 0.95214 0.94156 1.00484 0.92118 1.20371 0.99755 0.95929 0.98434 1.20873 0.86540 0.94365 0.99275 1.46994 1.05356 1.12945 1.66360 1.17066 0.82336 0.86438 0.76552 1.90779 1.84793 1.17843 1.51160 1.24573 1.00649 1.04179 1.18014 1.83720 1.10115 1.00829 1.48568 1.25739 1.01222 1.04493 1.02281 1.19980 1.03172 0.91449 1.06703 1.17308 0.92892 0.83590 0.95979 1.91490 1.93581 1.45181 1.80304 1.21551 1.00808 0.80519 0.99129 1.20062 0.93326 0.86431 0.94727 0.97190 0.94512 0.90737 0.99652 0.89663 0.91490 0.91326 0.87911 0.89193 0.90680 0.76439 0.79844 0.91408 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.72 10.12 21.65 0.22 -53.50 16 2 C -0.06 -3.31 5.49 84.86 0.47 -2.84 16 3 Si 0.97 42.45 29.55 68.60 2.03 44.48 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.23 -11.64 9.77 84.03 0.82 -10.82 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -28.92 3.16 -675.10 -2.13 -31.05 16 10 C 0.15 7.01 5.91 86.88 0.51 7.52 16 11 C -0.12 -4.22 6.24 32.01 0.20 -4.02 16 12 C -0.08 -2.71 2.63 -11.99 -0.03 -2.74 16 13 H 0.06 1.99 8.10 -2.39 -0.02 1.97 16 14 C -0.11 -2.71 5.55 28.51 0.16 -2.55 16 15 C 0.11 3.08 6.36 85.84 0.55 3.63 16 16 N -0.59 -19.06 3.03 -842.60 -2.55 -21.61 16 17 C 0.59 20.59 7.42 86.34 0.64 21.24 16 18 O -0.56 -22.59 16.21 -4.48 -0.07 -22.66 16 19 C -0.35 -10.84 5.27 24.06 0.13 -10.71 16 20 S 0.30 7.14 20.14 -56.49 -1.14 6.00 16 21 C -0.20 -3.51 10.91 66.80 0.73 -2.78 16 22 C -0.18 -3.73 10.15 21.12 0.21 -3.51 16 23 C 0.14 3.97 7.47 21.84 0.16 4.13 16 24 F -0.13 -4.12 17.09 44.97 0.77 -3.35 16 25 C 0.11 3.69 4.56 86.15 0.39 4.08 16 26 C 0.16 6.34 3.29 43.61 0.14 6.48 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 29 H 0.07 3.96 5.91 -2.39 -0.01 3.94 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 1.63 8.13 -2.39 -0.02 1.61 16 34 H 0.10 2.09 7.65 -2.39 -0.02 2.07 16 35 H 0.09 2.53 6.87 -2.39 -0.02 2.52 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.22 2.07 8.06 -2.91 -0.02 2.05 16 38 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 40 H 0.08 2.73 4.53 -10.66 -0.05 2.69 16 Total: -1.00 -67.20 333.85 3.23 -63.97 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.03 Total: 10.61 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.08 Total: 7.11 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -4.46 Total: -106.16 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.07 Total: -22.66 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.77 Total: -3.35 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 7.14 SS G_CDS: -1.14 Total: 6.00 kcal Total: -67.20 3.23 -63.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042039167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.969 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds