Wall clock time and date at job start Tue Mar 31 2020 13:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99571 * 2 1 4 4 H 1.48492 * 109.47293 * 266.36909 * 3 2 1 5 5 H 1.48504 * 109.46999 * 26.36870 * 3 2 1 6 6 H 1.48496 * 109.46786 * 146.36691 * 3 2 1 7 7 C 1.38800 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00424 * 187.01211 * 7 2 1 9 9 N 1.36936 * 120.00281 * 7.01420 * 7 2 1 10 10 C 1.48155 * 126.39821 * 350.83623 * 9 7 2 11 11 C 1.55299 * 107.04749 * 185.00355 * 10 9 7 12 12 C 1.53700 * 101.81260 * 22.44579 * 11 10 9 13 13 H 1.08999 * 111.10306 * 78.59503 * 12 11 10 14 14 C 1.51986 * 115.01778 * 206.55704 * 12 11 10 15 15 C 1.53880 * 107.29481 * 175.47577 * 14 12 11 16 16 N 1.46595 * 110.67858 * 308.13282 * 15 14 12 17 17 C 1.34776 * 119.75517 * 227.77294 * 16 15 14 18 18 O 1.21738 * 119.99705 * 175.13182 * 17 16 15 19 19 C 1.46289 * 120.00192 * 355.12541 * 17 16 15 20 20 S 1.75824 * 125.46398 * 305.12174 * 19 17 16 21 21 C 1.70600 * 91.60768 * 179.97438 * 20 19 17 22 22 C 1.33732 * 111.03731 * 359.97438 * 21 20 19 23 23 C 1.36923 * 125.46635 * 124.81054 * 19 17 16 24 24 F 1.35100 * 123.40316 * 0.02562 * 23 19 17 25 25 C 1.47799 * 120.49049 * 47.78615 * 16 15 14 26 26 C 1.45501 * 126.40240 * 170.83982 * 9 7 2 27 27 H 1.09000 * 108.99353 * 266.36257 * 26 9 7 28 28 H 0.96996 * 119.99994 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.92088 * 65.65300 * 10 9 7 30 30 H 1.09006 * 109.92346 * 304.35725 * 10 9 7 31 31 H 1.09001 * 110.95941 * 264.31534 * 11 10 9 32 32 H 1.09002 * 110.98867 * 140.58996 * 11 10 9 33 33 H 1.08999 * 109.91751 * 56.00776 * 14 12 11 34 34 H 1.09007 * 109.86037 * 294.91052 * 14 12 11 35 35 H 1.09008 * 109.22618 * 187.83878 * 15 14 12 36 36 H 1.08994 * 109.23216 * 68.43158 * 15 14 12 37 37 H 1.08000 * 124.48016 * 179.97438 * 21 20 19 38 38 H 1.08005 * 122.44959 * 179.97438 * 22 21 20 39 39 H 1.08997 * 110.05883 * 67.94493 * 25 16 15 40 40 H 1.09005 * 110.06270 * 189.39350 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5744 2.0022 -1.3972 5 1 1.4112 2.6737 0.6219 6 1 3.5071 1.4637 0.7755 7 6 2.0103 -1.2020 0.0005 8 1 3.0843 -1.2055 0.1147 9 7 1.3334 -2.3836 -0.1437 10 6 -0.1370 -2.5630 -0.1200 11 6 -0.4107 -4.0898 -0.1957 12 6 0.9152 -4.6730 0.3184 13 1 0.9725 -4.6186 1.4055 14 6 1.2441 -6.0671 -0.1897 15 6 2.6449 -6.4269 0.3358 16 7 3.6065 -5.3685 0.0128 17 6 4.7964 -5.6896 -0.5328 18 8 5.5617 -4.8107 -0.8845 19 6 5.1682 -7.0943 -0.7023 20 16 5.1969 -8.3031 0.5742 21 6 5.7093 -9.5114 -0.5157 22 6 5.8430 -9.0179 -1.7514 23 6 5.5438 -7.6800 -1.8815 24 9 5.6169 -7.0120 -3.0536 25 6 3.2810 -3.9521 0.2813 26 6 1.9239 -3.6975 -0.3489 27 1 1.9742 -3.9007 -1.4186 28 1 -0.4850 0.8400 0.0004 29 1 -0.5861 -2.0623 -0.9778 30 1 -0.5458 -2.1578 0.8057 31 1 -0.6015 -4.4013 -1.2226 32 1 -1.2387 -4.3707 0.4552 33 1 1.2435 -6.0748 -1.2796 34 1 0.5118 -6.7810 0.1875 35 1 2.9713 -7.3606 -0.1224 36 1 2.6010 -6.5540 1.4174 37 1 5.9003 -10.5390 -0.2436 38 1 6.1596 -9.6250 -2.5867 39 1 3.2332 -3.7767 1.3560 40 1 4.0323 -3.3037 -0.1699 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042039168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:21 Heat of formation + Delta-G solvation = -5.874292 kcal Electronic energy + Delta-G solvation = -25728.442451 eV Core-core repulsion = 21971.534033 eV Total energy + Delta-G solvation = -3756.908418 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -49.02449 -40.22394 -38.40163 -37.41130 -35.41181 -32.91483 -31.35986 -30.66259 -29.01339 -28.40437 -25.38204 -24.66542 -23.68093 -22.29974 -21.15524 -20.06871 -19.85440 -19.37731 -18.15739 -17.08619 -16.59196 -16.50511 -15.77634 -15.41340 -14.97561 -14.82828 -14.65733 -14.37454 -14.13592 -13.95688 -13.61701 -13.23702 -12.98854 -12.97368 -12.55175 -12.27676 -12.13967 -11.85647 -11.56624 -11.45476 -11.32568 -10.95999 -10.82113 -10.73205 -10.14809 -10.00520 -9.96647 -9.89929 -9.65841 -9.50050 -9.15013 -8.76532 -8.59888 -8.48350 -6.82453 -5.72763 -3.05456 0.19795 0.91634 1.43209 1.95552 2.75097 3.12990 3.43984 3.49661 3.50709 4.01952 4.39200 4.52211 4.65236 4.85008 4.92295 4.96982 5.11079 5.31665 5.38937 5.44894 5.49505 5.57761 5.67270 5.77223 5.88070 5.98086 6.00334 6.05583 6.10653 6.16313 6.35521 6.46413 6.55273 6.67531 6.73467 7.05262 7.43326 7.54965 7.62879 7.81710 8.15719 8.24500 9.19766 9.82840 10.50393 11.40518 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.003673 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.767102 B = 7620.917399 C = 8368.530284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.118 4.118 15 C 0.103 3.897 16 N -0.596 5.596 17 C 0.586 3.414 18 O -0.518 6.518 19 C -0.298 4.298 20 S 0.267 5.733 21 C -0.225 4.225 22 C -0.170 4.170 23 C 0.141 3.859 24 F -0.111 7.111 25 C 0.117 3.883 26 C 0.156 3.844 27 H 0.026 0.974 28 H 0.253 0.747 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.179 0.821 38 H 0.157 0.843 39 H 0.074 0.926 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 -23.235 1.886 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.054 3.946 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.156 4.156 15 C -0.021 4.021 16 N -0.329 5.329 17 C 0.371 3.629 18 O -0.395 6.395 19 C -0.420 4.420 20 S 0.533 5.467 21 C -0.363 4.363 22 C -0.202 4.202 23 C 0.108 3.892 24 F -0.089 7.089 25 C -0.005 4.005 26 C 0.047 3.953 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.196 0.804 38 H 0.174 0.826 39 H 0.092 0.908 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.117 -22.450 3.232 23.492 hybrid contribution 0.765 0.812 -1.871 2.178 sum 6.882 -21.638 1.361 22.746 Atomic orbital electron populations 1.69955 1.04954 1.25183 1.56465 1.24816 0.95654 0.97638 1.01852 0.86189 0.78727 0.83479 0.77782 1.21471 1.21756 1.20610 1.19020 0.91146 0.82396 1.43368 0.90310 1.44165 1.01675 1.00791 1.85095 1.21539 0.83812 0.88281 1.01014 1.22726 0.95756 0.99422 0.99694 1.22278 0.97455 0.93452 1.00103 0.90339 1.21783 0.94754 0.97768 1.01308 1.21887 0.89868 0.89848 1.00459 1.48175 1.14856 1.08715 1.61180 1.16781 0.82186 0.85757 0.78212 1.90877 1.51235 1.48467 1.48921 1.24639 1.18067 1.00542 0.98722 1.83252 1.60536 0.94900 1.08034 1.25104 1.07703 1.05719 0.97751 1.19802 1.07203 0.93686 0.99541 1.16818 1.01012 0.90134 0.81249 1.91567 1.93455 1.80039 1.43886 1.21807 0.99266 0.78625 1.00793 1.20987 0.90746 0.87410 0.96192 0.95691 0.93722 0.93768 0.93467 0.92492 0.92190 0.91314 0.90622 0.90477 0.91240 0.80357 0.82568 0.90802 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.52 55.49 0.58 -26.41 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 3 Si 0.91 22.50 29.56 -169.99 -5.02 17.47 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.45 9.89 -15.06 -0.15 -6.60 16 8 H 0.08 2.16 7.37 -52.48 -0.39 1.77 16 9 N -0.59 -15.00 3.35 -162.91 -0.55 -15.54 16 10 C 0.18 4.25 5.44 -1.91 -0.01 4.24 16 11 C -0.14 -2.48 6.54 -25.15 -0.16 -2.64 16 12 C -0.11 -1.89 2.61 -89.51 -0.23 -2.12 16 13 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 14 C -0.12 -1.51 5.72 -26.79 -0.15 -1.66 16 15 C 0.10 1.24 5.65 -3.53 -0.02 1.22 16 16 N -0.60 -9.57 3.01 -174.42 -0.52 -10.10 16 17 C 0.59 10.06 7.41 -13.03 -0.10 9.96 16 18 O -0.52 -11.09 16.48 5.15 0.08 -11.01 16 19 C -0.30 -3.95 4.77 -36.82 -0.18 -4.12 16 20 S 0.27 2.22 21.29 -107.50 -2.29 -0.07 16 21 C -0.23 -1.51 10.91 29.15 0.32 -1.19 16 22 C -0.17 -1.48 10.15 -41.35 -0.42 -1.90 16 23 C 0.14 1.80 7.50 -40.25 -0.30 1.50 16 24 F -0.11 -1.69 17.23 2.25 0.04 -1.65 16 25 C 0.12 2.25 5.65 -3.95 -0.02 2.23 16 26 C 0.16 3.23 2.75 -67.82 -0.19 3.05 16 27 H 0.03 0.58 7.94 -51.93 -0.41 0.17 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 30 H 0.05 1.23 7.55 -51.93 -0.39 0.84 16 31 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.94 7.99 -51.93 -0.41 0.53 16 34 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.08 0.79 5.41 -51.92 -0.28 0.51 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.18 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.09 2.07 6.76 -51.93 -0.35 1.72 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -33.44 337.02 -9.45 -42.89 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.14 Total: -2.43 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.71 Total: 1.77 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.49 Total: -52.05 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.29 Total: -0.07 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.44 -9.45 -42.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042039168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.014 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds