Wall clock time and date at job start Tue Mar 31 2020 13:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99571 * 2 1 4 4 H 1.48492 * 109.47293 * 266.36909 * 3 2 1 5 5 H 1.48504 * 109.46999 * 26.36870 * 3 2 1 6 6 H 1.48496 * 109.46786 * 146.36691 * 3 2 1 7 7 C 1.38800 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00424 * 187.01211 * 7 2 1 9 9 N 1.36936 * 120.00281 * 7.01420 * 7 2 1 10 10 C 1.48155 * 126.39821 * 350.83623 * 9 7 2 11 11 C 1.55299 * 107.04749 * 185.00355 * 10 9 7 12 12 C 1.53700 * 101.81260 * 22.44579 * 11 10 9 13 13 H 1.08999 * 111.10306 * 78.59503 * 12 11 10 14 14 C 1.51986 * 115.01778 * 206.55704 * 12 11 10 15 15 C 1.53880 * 107.29481 * 175.47577 * 14 12 11 16 16 N 1.46595 * 110.67858 * 308.13282 * 15 14 12 17 17 C 1.34776 * 119.75517 * 227.77294 * 16 15 14 18 18 O 1.21738 * 119.99705 * 175.13182 * 17 16 15 19 19 C 1.46289 * 120.00192 * 355.12541 * 17 16 15 20 20 S 1.75824 * 125.46398 * 305.12174 * 19 17 16 21 21 C 1.70600 * 91.60768 * 179.97438 * 20 19 17 22 22 C 1.33732 * 111.03731 * 359.97438 * 21 20 19 23 23 C 1.36923 * 125.46635 * 124.81054 * 19 17 16 24 24 F 1.35100 * 123.40316 * 0.02562 * 23 19 17 25 25 C 1.47799 * 120.49049 * 47.78615 * 16 15 14 26 26 C 1.45501 * 126.40240 * 170.83982 * 9 7 2 27 27 H 1.09000 * 108.99353 * 266.36257 * 26 9 7 28 28 H 0.96996 * 119.99994 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.92088 * 65.65300 * 10 9 7 30 30 H 1.09006 * 109.92346 * 304.35725 * 10 9 7 31 31 H 1.09001 * 110.95941 * 264.31534 * 11 10 9 32 32 H 1.09002 * 110.98867 * 140.58996 * 11 10 9 33 33 H 1.08999 * 109.91751 * 56.00776 * 14 12 11 34 34 H 1.09007 * 109.86037 * 294.91052 * 14 12 11 35 35 H 1.09008 * 109.22618 * 187.83878 * 15 14 12 36 36 H 1.08994 * 109.23216 * 68.43158 * 15 14 12 37 37 H 1.08000 * 124.48016 * 179.97438 * 21 20 19 38 38 H 1.08005 * 122.44959 * 179.97438 * 22 21 20 39 39 H 1.08997 * 110.05883 * 67.94493 * 25 16 15 40 40 H 1.09005 * 110.06270 * 189.39350 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5744 2.0022 -1.3972 5 1 1.4112 2.6737 0.6219 6 1 3.5071 1.4637 0.7755 7 6 2.0103 -1.2020 0.0005 8 1 3.0843 -1.2055 0.1147 9 7 1.3334 -2.3836 -0.1437 10 6 -0.1370 -2.5630 -0.1200 11 6 -0.4107 -4.0898 -0.1957 12 6 0.9152 -4.6730 0.3184 13 1 0.9725 -4.6186 1.4055 14 6 1.2441 -6.0671 -0.1897 15 6 2.6449 -6.4269 0.3358 16 7 3.6065 -5.3685 0.0128 17 6 4.7964 -5.6896 -0.5328 18 8 5.5617 -4.8107 -0.8845 19 6 5.1682 -7.0943 -0.7023 20 16 5.1969 -8.3031 0.5742 21 6 5.7093 -9.5114 -0.5157 22 6 5.8430 -9.0179 -1.7514 23 6 5.5438 -7.6800 -1.8815 24 9 5.6169 -7.0120 -3.0536 25 6 3.2810 -3.9521 0.2813 26 6 1.9239 -3.6975 -0.3489 27 1 1.9742 -3.9007 -1.4186 28 1 -0.4850 0.8400 0.0004 29 1 -0.5861 -2.0623 -0.9778 30 1 -0.5458 -2.1578 0.8057 31 1 -0.6015 -4.4013 -1.2226 32 1 -1.2387 -4.3707 0.4552 33 1 1.2435 -6.0748 -1.2796 34 1 0.5118 -6.7810 0.1875 35 1 2.9713 -7.3606 -0.1224 36 1 2.6010 -6.5540 1.4174 37 1 5.9003 -10.5390 -0.2436 38 1 6.1596 -9.6250 -2.5867 39 1 3.2332 -3.7767 1.3560 40 1 4.0323 -3.3037 -0.1699 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042039168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:20 Heat of formation + Delta-G solvation = -27.717693 kcal Electronic energy + Delta-G solvation = -25729.389652 eV Core-core repulsion = 21971.534033 eV Total energy + Delta-G solvation = -3757.855619 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.05646 -41.57495 -39.83306 -38.26897 -36.94116 -34.71916 -32.97292 -31.91959 -30.43951 -29.91046 -26.59936 -26.34290 -24.95996 -23.64435 -22.24031 -21.83416 -21.11123 -20.50297 -19.26648 -18.56382 -18.02588 -17.71342 -16.98525 -16.75395 -16.58026 -16.07105 -15.84182 -15.71313 -15.49988 -15.11696 -14.94545 -14.65838 -14.42935 -14.07747 -13.86595 -13.72626 -13.46188 -13.19583 -13.09805 -12.91115 -12.77334 -12.56144 -12.18646 -12.11827 -12.02805 -11.76023 -11.59694 -11.44567 -11.26662 -11.06755 -10.73496 -10.00771 -9.80255 -9.45572 -8.91521 -7.91415 -5.25166 -0.59513 0.13853 0.78341 1.19985 1.41013 1.43911 1.50898 1.53609 1.90002 2.46498 3.27076 3.28145 3.31399 3.48679 3.74402 3.90138 3.93760 3.96595 4.22558 4.23794 4.24963 4.38261 4.48488 4.58361 4.66135 4.71190 4.77025 4.84474 4.86767 4.89330 5.06966 5.13150 5.19579 5.21029 5.31519 5.48476 5.53631 5.66891 5.74117 6.16294 6.19583 6.88032 7.05312 7.73021 8.40969 9.20558 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.003673 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.767102 B = 7620.917399 C = 8368.530284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.243 4.243 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.181 3.819 11 C -0.121 4.121 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.109 4.109 15 C 0.096 3.904 16 N -0.594 5.594 17 C 0.581 3.419 18 O -0.581 6.581 19 C -0.348 4.348 20 S 0.330 5.670 21 C -0.190 4.190 22 C -0.184 4.184 23 C 0.126 3.874 24 F -0.138 7.138 25 C 0.129 3.871 26 C 0.147 3.853 27 H 0.000 1.000 28 H 0.248 0.752 29 H 0.004 0.996 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.226 0.774 38 H 0.179 0.821 39 H 0.078 0.922 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.246 -27.883 3.494 28.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.797 3.203 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.147 4.147 15 C -0.026 4.026 16 N -0.326 5.326 17 C 0.369 3.631 18 O -0.462 6.462 19 C -0.469 4.469 20 S 0.597 5.403 21 C -0.328 4.328 22 C -0.214 4.214 23 C 0.091 3.909 24 F -0.116 7.116 25 C 0.005 3.995 26 C 0.039 3.961 27 H 0.017 0.983 28 H 0.058 0.942 29 H 0.022 0.978 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.242 0.758 38 H 0.197 0.803 39 H 0.096 0.904 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.259 -27.163 4.856 28.295 hybrid contribution 0.756 2.170 -2.358 3.293 sum 7.015 -24.993 2.498 26.079 Atomic orbital electron populations 1.70146 1.06082 1.25408 1.57609 1.25576 0.96549 1.00642 1.02312 0.85234 0.77845 0.79680 0.77498 1.21683 1.21390 1.19661 1.19285 0.91290 0.83966 1.42614 0.90842 1.44434 1.02692 1.01876 1.84835 1.21364 0.82849 0.92440 0.97715 1.22602 0.97590 0.94485 1.01274 1.22218 0.94499 0.94585 1.00089 0.89629 1.21796 0.96256 0.95835 1.00847 1.22276 0.88369 0.89339 1.02588 1.48236 1.15591 1.07976 1.60776 1.17400 0.81645 0.87273 0.76822 1.90827 1.53015 1.50880 1.51498 1.24441 1.21392 0.99670 1.01399 1.83017 1.59079 0.92637 1.05612 1.25697 1.03714 1.07143 0.96222 1.19937 1.08198 0.91859 1.01397 1.17484 1.01372 0.91803 0.80280 1.91491 1.93715 1.80949 1.45493 1.21384 0.97134 0.80664 1.00271 1.21123 0.93023 0.86668 0.95290 0.98281 0.94234 0.97780 0.96395 0.91533 0.89007 0.92287 0.85968 0.87861 0.88221 0.75771 0.80335 0.90376 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 10.52 21.65 0.23 -57.77 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 3 Si 0.97 48.01 29.56 68.60 2.03 50.03 16 4 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 7 C -0.24 -14.24 9.89 84.03 0.83 -13.41 16 8 H 0.07 4.27 7.37 -2.91 -0.02 4.25 16 9 N -0.61 -32.58 3.35 -669.32 -2.24 -34.82 16 10 C 0.18 8.99 5.44 86.85 0.47 9.46 16 11 C -0.12 -4.22 6.54 31.62 0.21 -4.01 16 12 C -0.09 -2.99 2.61 -10.07 -0.03 -3.01 16 13 H 0.09 2.65 8.13 -2.39 -0.02 2.63 16 14 C -0.11 -2.41 5.72 30.56 0.17 -2.23 16 15 C 0.10 2.00 5.65 86.66 0.49 2.49 16 16 N -0.59 -19.00 3.01 -823.95 -2.48 -21.48 16 17 C 0.58 20.50 7.41 86.34 0.64 21.14 16 18 O -0.58 -26.74 16.48 -4.47 -0.07 -26.81 16 19 C -0.35 -8.82 4.77 24.06 0.11 -8.70 16 20 S 0.33 4.07 21.29 -56.49 -1.20 2.87 16 21 C -0.19 -1.49 10.91 66.80 0.73 -0.76 16 22 C -0.18 -2.56 10.15 21.12 0.21 -2.34 16 23 C 0.13 3.09 7.50 21.84 0.16 3.25 16 24 F -0.14 -4.37 17.23 44.97 0.77 -3.59 16 25 C 0.13 5.17 5.65 85.73 0.48 5.66 16 26 C 0.15 6.31 2.75 45.60 0.13 6.44 16 27 H 0.00 -0.01 7.94 -2.39 -0.02 -0.03 16 28 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 29 H 0.00 0.22 7.51 -2.38 -0.02 0.20 16 30 H 0.02 0.97 7.55 -2.38 -0.02 0.95 16 31 H 0.07 2.20 8.12 -2.39 -0.02 2.18 16 32 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.06 1.46 7.99 -2.39 -0.02 1.44 16 34 H 0.12 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.10 1.68 5.41 -2.38 -0.01 1.67 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.23 -0.25 8.06 -2.91 -0.02 -0.28 16 38 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 40 H 0.05 2.63 6.76 -2.38 -0.02 2.62 16 Total: -1.00 -82.71 337.02 3.18 -79.53 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: 1.06 Total: 0.99 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 5.09 Total: 11.05 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -4.49 Total: -114.07 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.07 Total: -26.81 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.77 Total: -3.59 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.20 Total: 2.87 kcal Total: -82.71 3.18 -79.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042039168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.813 kcal (2) G-P(sol) polarization free energy of solvation -82.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds