Wall clock time and date at job start Tue Mar 31 2020 13:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31936 * 119.02231 * 2 1 4 4 C 1.32129 * 121.05792 * 180.02562 * 3 2 1 5 5 C 1.38987 * 119.12513 * 359.97438 * 4 3 2 6 6 Cl 1.73608 * 120.88485 * 180.02562 * 5 4 3 7 7 C 1.39629 * 118.22985 * 0.02562 * 5 4 3 8 8 C 1.48371 * 120.56702 * 180.02562 * 7 5 4 9 9 O 1.21485 * 119.99785 * 359.97438 * 8 7 5 10 10 N 1.34768 * 120.00205 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00055 * 179.97438 * 10 8 7 12 12 C 1.53000 * 110.64203 * 298.31117 * 11 10 8 13 13 C 1.55160 * 110.72359 * 174.97552 * 11 10 8 14 14 C 1.54907 * 101.58292 * 277.14361 * 13 11 10 15 15 N 1.47433 * 104.82899 * 322.98805 * 14 13 11 16 16 C 1.36935 * 125.64609 * 204.09519 * 15 14 13 17 17 H 1.07994 * 120.00154 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00101 * 0.04027 * 16 15 14 19 19 N 1.31621 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00084 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46777 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47208 * 119.99604 * 20 18 16 23 23 H 1.48501 * 109.47201 * 240.00147 * 20 18 16 24 24 C 1.47016 * 108.70453 * 24.13063 * 15 14 13 25 25 N 1.31526 * 119.01848 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47067 * 269.98191 * 1 2 3 27 27 H 1.09001 * 109.46840 * 29.97684 * 1 2 3 28 28 H 1.08998 * 109.47236 * 149.98001 * 1 2 3 29 29 H 1.08002 * 120.43763 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00153 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46856 * 59.30283 * 12 11 10 32 32 H 1.09005 * 109.47183 * 179.29964 * 12 11 10 33 33 H 1.08995 * 109.47185 * 299.29514 * 12 11 10 34 34 H 1.09005 * 111.00311 * 35.21051 * 13 11 10 35 35 H 1.09000 * 111.00812 * 159.06428 * 13 11 10 36 36 H 1.09003 * 110.36829 * 204.14944 * 14 13 11 37 37 H 1.09000 * 110.36966 * 81.82326 * 14 13 11 38 38 H 0.96998 * 119.99466 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.88316 * 239.52998 * 24 15 14 40 40 H 1.08996 * 110.01480 * 118.43055 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1537 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1867 0.0113 -0.0005 6 17 5.9228 0.0196 -0.0005 7 6 3.4757 -1.1904 -0.0005 8 6 4.1910 -2.4903 0.0001 9 8 5.4056 -2.5152 0.0001 10 7 3.4934 -3.6434 0.0006 11 6 4.1998 -4.9269 0.0006 12 6 5.0542 -5.0723 -1.2602 13 6 3.1980 -6.1049 0.1283 14 6 2.9699 -6.1545 1.6597 15 7 4.2851 -5.8405 2.2474 16 6 4.7073 -6.2035 3.4985 17 1 5.6934 -5.9234 3.8380 18 6 3.8678 -6.9319 4.3302 19 7 2.6662 -7.2740 3.9161 20 14 4.4435 -7.4265 6.0371 21 1 5.8226 -6.9227 6.2595 22 1 3.5336 -6.8424 7.0550 23 1 4.4319 -8.9068 6.1538 24 6 5.0678 -5.0724 1.2683 25 7 2.1450 -1.1501 -0.0005 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 3.9812 2.1506 -0.0001 30 1 2.5236 -3.6236 0.0009 31 1 5.7789 -4.2592 -1.3037 32 1 5.5801 -6.0268 -1.2347 33 1 4.4125 -5.0346 -2.1404 34 1 2.2688 -5.8864 -0.3981 35 1 3.6397 -7.0342 -0.2313 36 1 2.6469 -7.1504 1.9630 37 1 2.2333 -5.4086 1.9580 38 1 2.0795 -7.7827 4.4975 39 1 5.9875 -5.6058 1.0284 40 1 5.3047 -4.0874 1.6703 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046674877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:45 Heat of formation + Delta-G solvation = 48.271864 kcal Electronic energy + Delta-G solvation = -25575.010695 eV Core-core repulsion = 21838.326485 eV Total energy + Delta-G solvation = -3736.684209 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.56682 -39.78466 -37.41493 -36.78479 -34.41566 -33.94793 -33.26531 -31.78174 -29.97961 -28.71991 -28.62350 -26.05573 -25.63533 -23.83404 -23.27424 -21.24980 -20.33248 -19.19467 -18.42318 -17.88566 -16.82975 -16.30549 -15.93940 -15.58641 -15.32103 -14.67761 -14.58368 -14.13654 -13.75511 -13.70070 -13.22855 -13.13285 -12.77964 -12.70727 -12.25680 -12.08627 -12.01620 -11.80603 -11.66166 -11.55749 -11.44718 -11.16826 -10.92583 -10.86433 -10.47651 -10.35660 -10.18311 -10.04968 -9.82913 -9.61625 -9.40448 -9.17391 -8.69085 -8.63039 -6.79816 -5.63900 -3.04205 0.12659 0.44357 1.77255 2.70774 2.98184 3.41013 3.46956 3.49388 3.50173 3.50950 3.63278 4.19979 4.38326 4.51034 4.68725 5.02346 5.15631 5.27191 5.36702 5.40336 5.48869 5.51122 5.55792 5.73276 5.90561 6.00759 6.14182 6.21375 6.32705 6.33291 6.44299 6.50180 6.67270 6.81642 7.08221 7.47705 7.52113 7.65034 7.74462 7.85082 8.29992 8.37615 9.24568 9.85205 10.49857 11.40503 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.003810 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.354992 B = 7348.248782 C = 7634.462712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.317 3.683 3 N -0.496 5.496 4 C 0.165 3.835 5 C -0.111 4.111 6 Cl 0.001 6.999 7 C 0.154 3.846 8 C 0.563 3.437 9 O -0.501 6.501 10 N -0.680 5.680 11 C 0.157 3.843 12 C -0.150 4.150 13 C -0.145 4.145 14 C 0.152 3.848 15 N -0.604 5.604 16 C -0.217 4.217 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.924 5.924 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.137 3.863 25 N -0.480 5.480 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.184 0.816 30 H 0.408 0.592 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.011 0.989 38 H 0.251 0.749 39 H 0.032 0.968 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.609 14.911 -12.570 19.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 N -0.211 5.211 4 C -0.003 4.003 5 C -0.144 4.144 6 Cl 0.030 6.970 7 C 0.005 3.995 8 C 0.345 3.655 9 O -0.374 6.374 10 N -0.331 5.331 11 C 0.072 3.928 12 C -0.208 4.208 13 C -0.184 4.184 14 C 0.027 3.973 15 N -0.330 5.330 16 C -0.345 4.345 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.010 3.990 25 N -0.197 5.197 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.201 0.799 30 H 0.244 0.756 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.126 0.874 37 H 0.029 0.971 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.610 14.697 -12.374 19.389 hybrid contribution 0.804 -0.031 1.019 1.299 sum -1.806 14.666 -11.355 18.635 Atomic orbital electron populations 1.20644 0.84597 1.04635 1.04573 1.23400 0.98670 0.82805 0.90080 1.68307 1.08972 1.30353 1.13423 1.23397 0.89232 0.97389 0.90330 1.22881 0.90044 0.95950 1.05488 1.98444 1.03998 1.98605 1.95910 1.21853 0.89501 0.94608 0.93563 1.17552 0.86814 0.82518 0.78651 1.90852 1.11926 1.86259 1.48393 1.45839 1.10740 1.04633 1.71885 1.21474 0.93529 0.81898 0.95942 1.22038 1.00016 1.02969 0.95778 1.23361 0.97211 0.96148 1.01713 1.21949 0.87090 1.03036 0.85180 1.44508 1.12991 1.62360 1.13147 1.19139 0.99018 1.27475 0.88883 0.90495 1.24753 0.96242 1.01030 0.98718 1.69785 1.07936 1.44034 1.35570 0.86010 0.77710 0.77959 0.83941 1.20544 1.21848 1.21732 1.21597 0.93408 0.95703 0.88263 1.68360 1.07577 1.30909 1.12855 0.88958 0.89246 0.89008 0.79928 0.75636 0.90985 0.91466 0.93040 0.91756 0.90322 0.87364 0.97092 0.93866 0.94988 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.31 36.00 0.37 -0.30 16 2 C 0.32 3.67 7.64 -157.30 -1.20 2.47 16 3 N -0.50 -5.59 10.31 -10.70 -0.11 -5.70 16 4 C 0.17 1.73 11.14 -17.15 -0.19 1.54 16 5 C -0.11 -1.43 6.40 -38.78 -0.25 -1.68 16 6 Cl 0.00 0.02 26.25 -51.86 -1.36 -1.34 16 7 C 0.15 2.27 6.79 -82.61 -0.56 1.71 16 8 C 0.56 9.47 7.04 -12.09 -0.09 9.39 16 9 O -0.50 -9.22 11.06 5.38 0.06 -9.16 16 10 N -0.68 -11.31 5.14 -46.68 -0.24 -11.55 16 11 C 0.16 2.81 0.81 -129.98 -0.11 2.70 16 12 C -0.15 -2.30 8.45 37.16 0.31 -1.99 16 13 C -0.15 -2.63 6.09 -24.58 -0.15 -2.78 16 14 C 0.15 3.62 5.87 -2.53 -0.01 3.61 16 15 N -0.60 -15.70 3.39 -170.07 -0.58 -16.28 16 16 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -26.87 10.09 55.49 0.56 -26.31 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 C 0.14 3.05 6.13 -3.07 -0.02 3.03 16 25 N -0.48 -6.51 9.59 -7.31 -0.07 -6.58 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.41 6.30 7.85 -40.82 -0.32 5.98 16 31 H 0.07 1.18 6.38 -51.93 -0.33 0.84 16 32 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.08 1.38 8.05 -51.93 -0.42 0.97 16 36 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 40 H 0.03 0.82 6.47 -51.93 -0.34 0.48 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -32.17 342.64 -8.78 -40.95 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.04 Total: 2.51 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -2.14 Total: 10.92 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -0.44 Total: -66.42 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.06 Total: -9.16 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.36 Total: -1.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.17 -8.78 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046674877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.219 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds