Wall clock time and date at job start Tue Mar 31 2020 13:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31936 * 119.02231 * 2 1 4 4 C 1.32129 * 121.05792 * 180.02562 * 3 2 1 5 5 C 1.38987 * 119.12513 * 359.97438 * 4 3 2 6 6 Cl 1.73608 * 120.88485 * 180.02562 * 5 4 3 7 7 C 1.39629 * 118.22985 * 0.02562 * 5 4 3 8 8 C 1.48371 * 120.56702 * 180.02562 * 7 5 4 9 9 O 1.21485 * 119.99785 * 359.97438 * 8 7 5 10 10 N 1.34768 * 120.00205 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00055 * 179.97438 * 10 8 7 12 12 C 1.53000 * 110.64203 * 298.31117 * 11 10 8 13 13 C 1.55160 * 110.72359 * 174.97552 * 11 10 8 14 14 C 1.54907 * 101.58292 * 277.14361 * 13 11 10 15 15 N 1.47433 * 104.82899 * 322.98805 * 14 13 11 16 16 C 1.36935 * 125.64609 * 204.09519 * 15 14 13 17 17 H 1.07994 * 120.00154 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00101 * 0.04027 * 16 15 14 19 19 N 1.31621 * 120.00018 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 120.00084 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46777 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47208 * 119.99604 * 20 18 16 23 23 H 1.48501 * 109.47201 * 240.00147 * 20 18 16 24 24 C 1.47016 * 108.70453 * 24.13063 * 15 14 13 25 25 N 1.31526 * 119.01848 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47067 * 269.98191 * 1 2 3 27 27 H 1.09001 * 109.46840 * 29.97684 * 1 2 3 28 28 H 1.08998 * 109.47236 * 149.98001 * 1 2 3 29 29 H 1.08002 * 120.43763 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00153 * 359.97438 * 10 8 7 31 31 H 1.09004 * 109.46856 * 59.30283 * 12 11 10 32 32 H 1.09005 * 109.47183 * 179.29964 * 12 11 10 33 33 H 1.08995 * 109.47185 * 299.29514 * 12 11 10 34 34 H 1.09005 * 111.00311 * 35.21051 * 13 11 10 35 35 H 1.09000 * 111.00812 * 159.06428 * 13 11 10 36 36 H 1.09003 * 110.36829 * 204.14944 * 14 13 11 37 37 H 1.09000 * 110.36966 * 81.82326 * 14 13 11 38 38 H 0.96998 * 119.99466 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.88316 * 239.52998 * 24 15 14 40 40 H 1.08996 * 110.01480 * 118.43055 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1537 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1867 0.0113 -0.0005 6 17 5.9228 0.0196 -0.0005 7 6 3.4757 -1.1904 -0.0005 8 6 4.1910 -2.4903 0.0001 9 8 5.4056 -2.5152 0.0001 10 7 3.4934 -3.6434 0.0006 11 6 4.1998 -4.9269 0.0006 12 6 5.0542 -5.0723 -1.2602 13 6 3.1980 -6.1049 0.1283 14 6 2.9699 -6.1545 1.6597 15 7 4.2851 -5.8405 2.2474 16 6 4.7073 -6.2035 3.4985 17 1 5.6934 -5.9234 3.8380 18 6 3.8678 -6.9319 4.3302 19 7 2.6662 -7.2740 3.9161 20 14 4.4435 -7.4265 6.0371 21 1 5.8226 -6.9227 6.2595 22 1 3.5336 -6.8424 7.0550 23 1 4.4319 -8.9068 6.1538 24 6 5.0678 -5.0724 1.2683 25 7 2.1450 -1.1501 -0.0005 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 3.9812 2.1506 -0.0001 30 1 2.5236 -3.6236 0.0009 31 1 5.7789 -4.2592 -1.3037 32 1 5.5801 -6.0268 -1.2347 33 1 4.4125 -5.0346 -2.1404 34 1 2.2688 -5.8864 -0.3981 35 1 3.6397 -7.0342 -0.2313 36 1 2.6469 -7.1504 1.9630 37 1 2.2333 -5.4086 1.9580 38 1 2.0795 -7.7827 4.4975 39 1 5.9875 -5.6058 1.0284 40 1 5.3047 -4.0874 1.6703 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046674877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:44 Heat of formation + Delta-G solvation = 26.737373 kcal Electronic energy + Delta-G solvation = -25575.944500 eV Core-core repulsion = 21838.326485 eV Total energy + Delta-G solvation = -3737.618015 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.54547 -41.13742 -38.94920 -37.81234 -35.83057 -35.27615 -34.14618 -33.52997 -31.64544 -30.38549 -29.42855 -27.56792 -27.05955 -25.42950 -24.35341 -22.56630 -22.10595 -20.60022 -19.61669 -19.09274 -18.61856 -17.31512 -17.15834 -16.95264 -16.69680 -16.33838 -15.85350 -15.53601 -15.44537 -14.71773 -14.58654 -14.32559 -14.06146 -13.97503 -13.60031 -13.33576 -13.28615 -13.17516 -12.88326 -12.85944 -12.80221 -12.59330 -12.51095 -12.16320 -12.06810 -12.04488 -11.96601 -11.70082 -11.59814 -11.18913 -10.76406 -10.37747 -10.32710 -10.07252 -8.89232 -7.79536 -5.23005 -0.90279 -0.44636 0.79511 1.44463 1.44828 1.55175 1.55797 1.79120 2.45988 2.47456 2.57971 2.79276 3.18008 3.30483 3.38342 3.59150 3.69527 3.83289 3.99772 4.15128 4.25224 4.62933 4.66047 4.70508 4.72159 4.77036 4.78648 4.84375 4.90569 5.01829 5.07173 5.22830 5.30919 5.40970 5.42957 5.56954 5.63017 5.79170 6.30120 6.38639 6.66912 7.01614 7.11068 7.76311 8.39809 9.22147 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.003810 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.354992 B = 7348.248782 C = 7634.462712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.312 3.688 3 N -0.496 5.496 4 C 0.180 3.820 5 C -0.119 4.119 6 Cl -0.005 7.005 7 C 0.133 3.867 8 C 0.559 3.441 9 O -0.522 6.522 10 N -0.680 5.680 11 C 0.168 3.832 12 C -0.140 4.140 13 C -0.127 4.127 14 C 0.156 3.844 15 N -0.623 5.623 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.060 4.060 19 N -0.944 5.944 20 Si 0.977 3.023 21 H -0.273 1.273 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.136 3.864 25 N -0.494 5.494 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.221 0.779 30 H 0.413 0.587 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.078 0.922 37 H -0.012 1.012 38 H 0.248 0.752 39 H 0.028 0.972 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 16.026 -13.610 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.210 5.210 4 C 0.011 3.989 5 C -0.152 4.152 6 Cl 0.024 6.976 7 C -0.015 4.015 8 C 0.342 3.658 9 O -0.397 6.397 10 N -0.331 5.331 11 C 0.082 3.918 12 C -0.198 4.198 13 C -0.165 4.165 14 C 0.031 3.969 15 N -0.349 5.349 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.805 3.195 21 H -0.198 1.198 22 H -0.218 1.218 23 H -0.212 1.212 24 C 0.010 3.990 25 N -0.212 5.212 26 H 0.118 0.882 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.238 0.762 30 H 0.250 0.750 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.006 0.994 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.324 15.818 -13.438 21.020 hybrid contribution 0.996 -0.292 1.376 1.723 sum -2.328 15.526 -12.062 19.798 Atomic orbital electron populations 1.20813 0.82067 1.05998 1.05422 1.24136 1.00171 0.82341 0.88804 1.68453 1.09180 1.30042 1.13359 1.24003 0.88975 0.97902 0.88051 1.23017 0.89821 0.96248 1.06122 1.98439 1.04555 1.98612 1.95984 1.21606 0.90321 0.94050 0.95558 1.17893 0.86758 0.83278 0.77870 1.90831 1.12874 1.86790 1.49211 1.45782 1.10978 1.04306 1.72053 1.21314 0.93078 0.82502 0.94900 1.21958 0.99766 1.02934 0.95136 1.23211 0.98998 0.96844 0.97472 1.21747 0.85783 1.00340 0.89027 1.44786 1.14140 1.62806 1.13195 1.19409 0.99101 1.27976 0.90522 0.91153 1.25533 0.96463 1.01102 1.02182 1.70018 1.08636 1.44233 1.36471 0.85037 0.77461 0.77532 0.79459 1.19759 1.21842 1.21215 1.21673 0.93976 0.93751 0.89572 1.68365 1.07016 1.32046 1.13736 0.88151 0.87314 0.88224 0.76246 0.74969 0.92030 0.90738 0.90385 0.88300 0.89247 0.90438 0.99376 0.94183 0.95396 0.97150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.31 71.24 0.73 -0.40 16 2 C 0.31 6.65 7.64 138.79 1.06 7.71 16 3 N -0.50 -10.03 10.31 -187.76 -1.94 -11.97 16 4 C 0.18 3.37 11.14 84.83 0.94 4.32 16 5 C -0.12 -2.96 6.40 22.79 0.15 -2.81 16 6 Cl 0.00 -0.13 26.25 -2.72 -0.07 -0.20 16 7 C 0.13 3.85 6.79 41.98 0.29 4.13 16 8 C 0.56 18.80 7.04 86.94 0.61 19.41 16 9 O -0.52 -19.42 11.06 -3.67 -0.04 -19.46 16 10 N -0.68 -22.28 5.14 -419.90 -2.16 -24.43 16 11 C 0.17 5.88 0.81 4.79 0.00 5.88 16 12 C -0.14 -4.05 8.45 71.98 0.61 -3.44 16 13 C -0.13 -4.42 6.09 31.99 0.19 -4.23 16 14 C 0.16 7.54 5.87 86.85 0.51 8.05 16 15 N -0.62 -33.22 3.39 -691.99 -2.35 -35.57 16 16 C -0.24 -14.09 10.27 84.03 0.86 -13.23 16 17 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 19 N -0.94 -56.02 10.09 21.65 0.22 -55.80 16 20 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 C 0.14 6.19 6.13 86.73 0.53 6.73 16 25 N -0.49 -12.91 9.59 -177.05 -1.70 -14.61 16 26 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.22 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.41 12.47 7.85 -92.71 -0.73 11.75 16 31 H 0.06 1.94 6.38 -2.39 -0.02 1.93 16 32 H 0.07 2.05 8.12 -2.38 -0.02 2.03 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 2.79 8.04 -2.38 -0.02 2.77 16 35 H 0.09 2.97 8.05 -2.39 -0.02 2.95 16 36 H 0.08 4.26 5.87 -2.39 -0.01 4.24 16 37 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 39 H 0.03 1.28 7.80 -2.39 -0.02 1.26 16 40 H 0.01 0.52 6.47 -2.39 -0.02 0.51 16 Total: -1.00 -71.41 342.64 1.31 -70.09 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.36 Total: 14.16 kcal Atomic # 6 Polarization: 22.18 SS G_CDS: 6.96 Total: 29.15 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -7.92 Total: -142.38 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.04 Total: -19.46 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.07 Total: -0.20 kcal Total: -71.41 1.31 -70.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046674877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.832 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds