Wall clock time and date at job start Tue Mar 31 2020 13:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31932 * 119.02475 * 2 1 4 4 C 1.32129 * 121.06109 * 179.97438 * 3 2 1 5 5 C 1.38997 * 119.12210 * 359.74225 * 4 3 2 6 6 Cl 1.73597 * 120.88465 * 180.25246 * 5 4 3 7 7 C 1.39630 * 118.22519 * 0.51665 * 5 4 3 8 8 C 1.48369 * 120.55976 * 179.75950 * 7 5 4 9 9 O 1.21486 * 120.00205 * 359.72253 * 8 7 5 10 10 N 1.34775 * 119.99961 * 179.71801 * 8 7 5 11 11 C 1.46503 * 120.00088 * 180.02562 * 10 8 7 12 12 C 1.52997 * 110.88653 * 59.30047 * 11 10 8 13 13 C 1.55165 * 111.03696 * 183.20471 * 11 10 8 14 14 C 1.54320 * 102.94006 * 82.58575 * 13 11 10 15 15 N 1.47023 * 107.27576 * 22.19194 * 14 13 11 16 16 C 1.36933 * 125.64851 * 181.02277 * 15 14 13 17 17 H 1.08000 * 119.99877 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00137 * 0.04163 * 16 15 14 19 19 N 1.31612 * 120.00209 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99839 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47285 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47452 * 120.00239 * 20 18 16 23 23 H 1.48505 * 109.47099 * 240.00273 * 20 18 16 24 24 C 1.47424 * 108.70235 * 1.05739 * 15 14 13 25 25 N 1.31522 * 119.01406 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47137 * 269.98303 * 1 2 3 27 27 H 1.09007 * 109.46499 * 29.97920 * 1 2 3 28 28 H 1.08996 * 109.47308 * 149.98087 * 1 2 3 29 29 H 1.07993 * 120.43778 * 179.97438 * 4 3 2 30 30 H 0.97008 * 120.00104 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47153 * 297.57234 * 12 11 10 32 32 H 1.09001 * 109.46832 * 177.57425 * 12 11 10 33 33 H 1.09004 * 109.47261 * 57.57406 * 12 11 10 34 34 H 1.08990 * 110.71702 * 200.94708 * 13 11 10 35 35 H 1.09003 * 110.71788 * 324.22618 * 13 11 10 36 36 H 1.09006 * 109.88205 * 262.77151 * 14 13 11 37 37 H 1.09003 * 110.01235 * 141.68506 * 14 13 11 38 38 H 0.97000 * 120.00659 * 179.97438 * 19 18 16 39 39 H 1.08992 * 110.37079 * 217.03221 * 24 15 14 40 40 H 1.09005 * 110.45662 * 94.75392 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1536 0.0000 4 6 3.4676 1.2006 0.0005 5 6 4.1868 0.0111 0.0065 6 17 5.9227 0.0195 0.0140 7 6 3.4757 -1.1905 0.0007 8 6 4.1910 -2.4904 0.0013 9 8 5.4056 -2.5153 0.0018 10 7 3.4934 -3.6435 0.0014 11 6 4.1997 -4.9270 0.0026 12 6 5.1011 -5.0524 1.2324 13 6 3.2015 -6.1122 -0.0785 14 6 2.9050 -6.2115 -1.5897 15 7 4.0269 -5.5774 -2.2974 16 6 4.1386 -5.4400 -3.6552 17 1 5.0065 -4.9571 -4.0795 18 6 3.1363 -5.9211 -4.4863 19 7 2.0783 -6.5089 -3.9693 20 14 3.2884 -5.7329 -6.3386 21 1 4.5616 -5.0408 -6.6629 22 1 3.2777 -7.0746 -6.9750 23 1 2.1466 -4.9331 -6.8503 24 6 5.0121 -5.1148 -1.3030 25 7 2.1449 -1.1502 -0.0005 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3632 0.8903 -0.5136 28 1 -0.3634 -0.8898 -0.5141 29 1 3.9812 2.1505 0.0001 30 1 2.5235 -3.6236 0.0014 31 1 5.8633 -4.2736 1.2052 32 1 5.5814 -6.0309 1.2325 33 1 4.5010 -4.9421 2.1356 34 1 3.6627 -7.0303 0.2852 35 1 2.2918 -5.8890 0.4791 36 1 1.9774 -5.6877 -1.8207 37 1 2.8235 -7.2574 -1.8859 38 1 1.3777 -6.8447 -4.5500 39 1 5.4511 -4.1676 -1.6161 40 1 5.7906 -5.8644 -1.1608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046674878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:48 Heat of formation + Delta-G solvation = 46.454104 kcal Electronic energy + Delta-G solvation = -25767.331491 eV Core-core repulsion = 22030.568458 eV Total energy + Delta-G solvation = -3736.763033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49687 -39.70480 -37.39125 -36.73629 -34.34168 -33.87166 -33.20009 -31.77854 -29.99350 -28.70643 -28.57262 -25.98927 -25.62718 -23.81166 -23.25707 -21.24822 -20.20068 -19.21576 -18.35785 -17.84306 -16.78863 -16.24268 -15.87201 -15.51726 -15.26518 -14.64298 -14.53541 -14.12738 -13.73044 -13.69048 -13.29914 -13.11168 -12.80171 -12.63421 -12.10808 -11.96785 -11.93529 -11.83458 -11.71079 -11.58710 -11.42584 -11.10179 -10.88602 -10.87801 -10.45944 -10.36278 -10.10395 -10.02186 -9.88312 -9.65382 -9.34475 -9.12729 -8.67482 -8.54007 -6.78714 -5.69453 -3.01173 0.19362 0.51055 1.82578 2.77431 3.05239 3.40600 3.46838 3.48986 3.56911 3.58351 3.69806 4.26375 4.44779 4.51986 4.74876 5.04274 5.17842 5.31134 5.36361 5.45822 5.49638 5.56594 5.61127 5.73129 5.96686 6.00730 6.12579 6.15374 6.34046 6.38410 6.40660 6.53010 6.65617 6.79689 7.06184 7.55731 7.58210 7.60175 7.80909 7.84761 8.27595 8.38222 9.25037 9.85013 10.50761 11.42663 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.004464 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.836609 B = 6270.318964 C = 6821.198404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.317 3.683 3 N -0.496 5.496 4 C 0.164 3.836 5 C -0.111 4.111 6 Cl 0.000 7.000 7 C 0.155 3.845 8 C 0.564 3.436 9 O -0.505 6.505 10 N -0.673 5.673 11 C 0.154 3.846 12 C -0.150 4.150 13 C -0.146 4.146 14 C 0.176 3.824 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.076 0.924 18 C -0.009 4.009 19 N -0.923 5.923 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.292 1.292 24 C 0.133 3.867 25 N -0.478 5.478 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.183 0.817 30 H 0.409 0.591 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.250 0.750 39 H 0.052 0.948 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 12.731 13.044 18.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 N -0.211 5.211 4 C -0.004 4.004 5 C -0.144 4.144 6 Cl 0.029 6.971 7 C 0.006 3.994 8 C 0.346 3.654 9 O -0.379 6.379 10 N -0.323 5.323 11 C 0.068 3.932 12 C -0.209 4.209 13 C -0.184 4.184 14 C 0.052 3.948 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.740 3.260 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.219 1.219 24 C 0.006 3.994 25 N -0.195 5.195 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.200 0.800 30 H 0.245 0.755 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.667 12.567 12.835 17.975 hybrid contribution 0.533 0.151 -1.126 1.255 sum -0.134 12.718 11.709 17.288 Atomic orbital electron populations 1.20647 0.84640 1.04952 1.04242 1.23391 0.98660 0.82804 0.90072 1.68300 1.08964 1.30386 1.13482 1.23382 0.89247 0.97362 0.90438 1.22868 0.89940 0.95959 1.05603 1.98437 1.04119 1.98609 1.95938 1.21847 0.89496 0.94607 0.93438 1.17519 0.86752 0.82506 0.78578 1.90827 1.11955 1.86271 1.48863 1.45667 1.10728 1.04448 1.71475 1.21608 0.93484 0.81839 0.96282 1.22009 1.00014 1.02867 0.95979 1.23231 0.97810 0.96236 1.01146 1.21168 0.91303 0.98119 0.84239 1.44443 1.19115 1.67887 1.01441 1.19094 1.03751 1.31899 0.80148 0.90576 1.24752 0.96853 1.00967 0.97939 1.69950 1.09803 1.44498 1.32911 0.86079 0.77234 0.77267 0.85455 1.20563 1.21743 1.21878 1.21872 0.91928 0.97943 0.87679 1.68370 1.07583 1.30865 1.12695 0.89191 0.89218 0.88824 0.79990 0.75545 0.90681 0.91647 0.93089 0.90676 0.91618 0.93577 0.93717 0.93914 0.92935 0.95447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.31 36.01 0.37 -0.38 16 2 C 0.32 3.93 7.64 -157.31 -1.20 2.73 16 3 N -0.50 -5.94 10.31 -10.70 -0.11 -6.05 16 4 C 0.16 1.82 11.14 -17.14 -0.19 1.63 16 5 C -0.11 -1.49 6.40 -38.78 -0.25 -1.74 16 6 Cl 0.00 0.00 26.25 -51.86 -1.36 -1.36 16 7 C 0.16 2.40 6.79 -82.61 -0.56 1.84 16 8 C 0.56 9.78 7.20 -12.09 -0.09 9.69 16 9 O -0.51 -9.39 10.98 5.38 0.06 -9.33 16 10 N -0.67 -11.55 5.17 -46.38 -0.24 -11.79 16 11 C 0.15 2.73 0.82 -129.66 -0.11 2.62 16 12 C -0.15 -2.25 8.53 37.16 0.32 -1.94 16 13 C -0.15 -2.58 5.98 -24.89 -0.15 -2.73 16 14 C 0.18 4.17 5.37 -3.07 -0.02 4.15 16 15 N -0.60 -15.45 3.39 -170.07 -0.58 -16.03 16 16 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -27.04 10.31 55.49 0.57 -26.46 16 20 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 C 0.13 2.89 6.13 -2.53 -0.02 2.88 16 25 N -0.48 -6.90 9.59 -7.31 -0.07 -6.97 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.41 6.72 7.88 -40.82 -0.32 6.40 16 31 H 0.07 1.21 6.31 -51.93 -0.33 0.88 16 32 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 35 H 0.07 1.02 8.07 -51.93 -0.42 0.60 16 36 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 37 H 0.04 1.17 7.50 -51.93 -0.39 0.78 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.05 1.23 6.58 -51.93 -0.34 0.89 16 40 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -32.22 343.62 -8.81 -41.03 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.10 Total: 2.29 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -2.14 Total: 11.97 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: -0.43 Total: -67.30 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.06 Total: -9.33 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.36 Total: -1.36 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.22 -8.81 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046674878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.483 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds