Wall clock time and date at job start Tue Mar 31 2020 13:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31932 * 119.02475 * 2 1 4 4 C 1.32129 * 121.06109 * 179.97438 * 3 2 1 5 5 C 1.38997 * 119.12210 * 359.74225 * 4 3 2 6 6 Cl 1.73597 * 120.88465 * 180.25246 * 5 4 3 7 7 C 1.39630 * 118.22519 * 0.51665 * 5 4 3 8 8 C 1.48369 * 120.55976 * 179.75950 * 7 5 4 9 9 O 1.21486 * 120.00205 * 359.72253 * 8 7 5 10 10 N 1.34775 * 119.99961 * 179.71801 * 8 7 5 11 11 C 1.46503 * 120.00088 * 180.02562 * 10 8 7 12 12 C 1.52997 * 110.88653 * 59.30047 * 11 10 8 13 13 C 1.55165 * 111.03696 * 183.20471 * 11 10 8 14 14 C 1.54320 * 102.94006 * 82.58575 * 13 11 10 15 15 N 1.47023 * 107.27576 * 22.19194 * 14 13 11 16 16 C 1.36933 * 125.64851 * 181.02277 * 15 14 13 17 17 H 1.08000 * 119.99877 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00137 * 0.04163 * 16 15 14 19 19 N 1.31612 * 120.00209 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99839 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47285 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47452 * 120.00239 * 20 18 16 23 23 H 1.48505 * 109.47099 * 240.00273 * 20 18 16 24 24 C 1.47424 * 108.70235 * 1.05739 * 15 14 13 25 25 N 1.31522 * 119.01406 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47137 * 269.98303 * 1 2 3 27 27 H 1.09007 * 109.46499 * 29.97920 * 1 2 3 28 28 H 1.08996 * 109.47308 * 149.98087 * 1 2 3 29 29 H 1.07993 * 120.43778 * 179.97438 * 4 3 2 30 30 H 0.97008 * 120.00104 * 359.97438 * 10 8 7 31 31 H 1.09002 * 109.47153 * 297.57234 * 12 11 10 32 32 H 1.09001 * 109.46832 * 177.57425 * 12 11 10 33 33 H 1.09004 * 109.47261 * 57.57406 * 12 11 10 34 34 H 1.08990 * 110.71702 * 200.94708 * 13 11 10 35 35 H 1.09003 * 110.71788 * 324.22618 * 13 11 10 36 36 H 1.09006 * 109.88205 * 262.77151 * 14 13 11 37 37 H 1.09003 * 110.01235 * 141.68506 * 14 13 11 38 38 H 0.97000 * 120.00659 * 179.97438 * 19 18 16 39 39 H 1.08992 * 110.37079 * 217.03221 * 24 15 14 40 40 H 1.09005 * 110.45662 * 94.75392 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1471 1.1536 0.0000 4 6 3.4676 1.2006 0.0005 5 6 4.1868 0.0111 0.0065 6 17 5.9227 0.0195 0.0140 7 6 3.4757 -1.1905 0.0007 8 6 4.1910 -2.4904 0.0013 9 8 5.4056 -2.5153 0.0018 10 7 3.4934 -3.6435 0.0014 11 6 4.1997 -4.9270 0.0026 12 6 5.1011 -5.0524 1.2324 13 6 3.2015 -6.1122 -0.0785 14 6 2.9050 -6.2115 -1.5897 15 7 4.0269 -5.5774 -2.2974 16 6 4.1386 -5.4400 -3.6552 17 1 5.0065 -4.9571 -4.0795 18 6 3.1363 -5.9211 -4.4863 19 7 2.0783 -6.5089 -3.9693 20 14 3.2884 -5.7329 -6.3386 21 1 4.5616 -5.0408 -6.6629 22 1 3.2777 -7.0746 -6.9750 23 1 2.1466 -4.9331 -6.8503 24 6 5.0121 -5.1148 -1.3030 25 7 2.1449 -1.1502 -0.0005 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3632 0.8903 -0.5136 28 1 -0.3634 -0.8898 -0.5141 29 1 3.9812 2.1505 0.0001 30 1 2.5235 -3.6236 0.0014 31 1 5.8633 -4.2736 1.2052 32 1 5.5814 -6.0309 1.2325 33 1 4.5010 -4.9421 2.1356 34 1 3.6627 -7.0303 0.2852 35 1 2.2918 -5.8890 0.4791 36 1 1.9774 -5.6877 -1.8207 37 1 2.8235 -7.2574 -1.8859 38 1 1.3777 -6.8447 -4.5500 39 1 5.4511 -4.1676 -1.6161 40 1 5.7906 -5.8644 -1.1608 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046674878.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:47 Heat of formation + Delta-G solvation = 24.813811 kcal Electronic energy + Delta-G solvation = -25768.269885 eV Core-core repulsion = 22030.568458 eV Total energy + Delta-G solvation = -3737.701427 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.52154 -41.07699 -38.93012 -37.79814 -35.75813 -35.25685 -34.13387 -33.52762 -31.66373 -30.36296 -29.42591 -27.53464 -27.03729 -25.44210 -24.35901 -22.60207 -21.96158 -20.61434 -19.58911 -19.08237 -18.57084 -17.30274 -17.08125 -16.92899 -16.66236 -16.33818 -15.88559 -15.55970 -15.43976 -14.85430 -14.57974 -14.23313 -13.96992 -13.88800 -13.55088 -13.42611 -13.31401 -13.13195 -12.88137 -12.87047 -12.77602 -12.58389 -12.51411 -12.15093 -12.06465 -12.04624 -11.97160 -11.71660 -11.59611 -11.17433 -10.72820 -10.35839 -10.29821 -10.03227 -8.87231 -7.86955 -5.20398 -0.88262 -0.43104 0.80586 1.41720 1.41901 1.52352 1.58166 1.84172 2.46301 2.48352 2.60306 2.80100 3.20317 3.31639 3.40091 3.56802 3.70165 3.84925 4.02696 4.17342 4.25843 4.63406 4.67966 4.70300 4.72288 4.77130 4.78711 4.87162 4.92555 5.02674 5.06909 5.22619 5.34345 5.41630 5.43980 5.58870 5.66724 5.76523 6.19253 6.42265 6.68481 7.05443 7.10836 7.76523 8.40557 9.23152 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.011535 B = 0.004464 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.836609 B = 6270.318964 C = 6821.198404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.311 3.689 3 N -0.496 5.496 4 C 0.179 3.821 5 C -0.119 4.119 6 Cl -0.004 7.004 7 C 0.132 3.868 8 C 0.560 3.440 9 O -0.523 6.523 10 N -0.676 5.676 11 C 0.164 3.836 12 C -0.140 4.140 13 C -0.128 4.128 14 C 0.185 3.815 15 N -0.621 5.621 16 C -0.239 4.239 17 H 0.069 0.931 18 C -0.059 4.059 19 N -0.945 5.945 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.291 1.291 24 C 0.130 3.870 25 N -0.495 5.495 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.222 0.778 30 H 0.411 0.589 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.247 0.753 39 H 0.030 0.970 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.986 13.991 14.202 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.211 5.211 4 C 0.010 3.990 5 C -0.152 4.152 6 Cl 0.025 6.975 7 C -0.016 4.016 8 C 0.343 3.657 9 O -0.398 6.398 10 N -0.326 5.326 11 C 0.078 3.922 12 C -0.198 4.198 13 C -0.166 4.166 14 C 0.060 3.940 15 N -0.347 5.347 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.800 3.200 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.218 1.218 24 C 0.004 3.996 25 N -0.213 5.213 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.238 0.762 30 H 0.248 0.752 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.052 13.830 14.017 19.719 hybrid contribution 0.658 -0.170 -1.504 1.650 sum -0.394 13.660 12.513 18.529 Atomic orbital electron populations 1.20801 0.82206 1.05529 1.05743 1.24107 1.00136 0.82388 0.88904 1.68442 1.09231 1.29989 1.13426 1.24007 0.88961 0.97933 0.88136 1.23004 0.89842 0.96192 1.06118 1.98433 1.04451 1.98610 1.95986 1.21659 0.90279 0.94246 0.95407 1.17850 0.86738 0.83224 0.77884 1.90806 1.12720 1.86763 1.49560 1.45682 1.10851 1.04402 1.71655 1.21509 0.93211 0.82209 0.95273 1.21932 0.99378 1.03312 0.95183 1.23108 0.99363 0.97309 0.96815 1.20941 0.89703 0.95281 0.88058 1.44684 1.20455 1.68188 1.01364 1.19339 1.03648 1.31813 0.82031 0.91346 1.25502 0.96716 1.01057 1.01978 1.70146 1.10197 1.45093 1.33971 0.85123 0.77272 0.77135 0.80511 1.19797 1.21429 1.21779 1.21984 0.91941 0.96642 0.89038 1.68371 1.07171 1.32045 1.13668 0.87079 0.87716 0.89088 0.76210 0.75247 0.91888 0.90136 0.90768 0.88484 0.88728 0.96718 0.97103 0.94316 0.95122 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.31 71.24 0.73 -0.56 16 2 C 0.31 7.20 7.64 138.79 1.06 8.26 16 3 N -0.50 -10.76 10.31 -187.77 -1.94 -12.70 16 4 C 0.18 3.57 11.14 84.83 0.95 4.51 16 5 C -0.12 -3.07 6.40 22.79 0.15 -2.93 16 6 Cl 0.00 -0.10 26.25 -2.72 -0.07 -0.17 16 7 C 0.13 4.03 6.79 41.98 0.29 4.31 16 8 C 0.56 19.37 7.20 86.94 0.63 20.00 16 9 O -0.52 -19.53 10.98 -3.67 -0.04 -19.57 16 10 N -0.68 -22.91 5.17 -418.97 -2.17 -25.08 16 11 C 0.16 5.66 0.82 5.00 0.00 5.66 16 12 C -0.14 -3.88 8.53 71.98 0.61 -3.27 16 13 C -0.13 -4.33 5.98 31.78 0.19 -4.14 16 14 C 0.18 8.91 5.37 86.73 0.47 9.37 16 15 N -0.62 -32.61 3.39 -691.99 -2.35 -34.96 16 16 C -0.24 -13.95 10.28 84.03 0.86 -13.09 16 17 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 18 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 19 N -0.94 -56.73 10.31 21.65 0.22 -56.51 16 20 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 21 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 C 0.13 5.73 6.13 86.86 0.53 6.26 16 25 N -0.49 -13.92 9.59 -177.05 -1.70 -15.62 16 26 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 30 H 0.41 13.39 7.88 -92.70 -0.73 12.66 16 31 H 0.06 1.94 6.31 -2.39 -0.02 1.93 16 32 H 0.08 2.00 8.11 -2.39 -0.02 1.98 16 33 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.10 2.91 8.01 -2.39 -0.02 2.89 16 35 H 0.09 2.70 8.07 -2.39 -0.02 2.68 16 36 H 0.01 0.78 7.38 -2.38 -0.02 0.77 16 37 H 0.01 0.58 7.50 -2.39 -0.02 0.57 16 38 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.03 1.47 6.58 -2.39 -0.02 1.46 16 40 H 0.03 1.35 8.03 -2.38 -0.02 1.33 16 Total: -1.00 -71.77 343.62 1.27 -70.49 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.35 Total: 13.62 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: 6.93 Total: 31.42 kcal Atomic # 7 Polarization: -136.94 SS G_CDS: -7.93 Total: -144.86 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.04 Total: -19.57 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.07 Total: -0.17 kcal Total: -71.77 1.27 -70.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046674878.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.308 kcal (2) G-P(sol) polarization free energy of solvation -71.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds