Wall clock time and date at job start Tue Mar 31 2020 13:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34235 * 126.28169 * 2 1 4 4 H 0.97006 * 125.73314 * 0.02562 * 3 2 1 5 5 N 1.39922 * 108.52626 * 180.02562 * 3 2 1 6 6 C 1.30534 * 108.89290 * 359.97438 * 5 3 2 7 7 Cl 1.73602 * 126.00341 * 179.73927 * 6 5 3 8 8 C 1.38066 * 126.28396 * 180.02562 * 2 1 3 9 9 C 1.47392 * 126.42120 * 359.97438 * 8 2 1 10 10 O 1.21608 * 119.99508 * 269.99840 * 9 8 2 11 11 N 1.34771 * 120.00026 * 89.99385 * 9 8 2 12 12 C 1.46676 * 125.33936 * 180.02562 * 11 9 8 13 13 C 1.53720 * 107.94477 * 180.54659 * 12 11 9 14 14 H 1.08997 * 112.56136 * 139.71810 * 13 12 11 15 15 C 1.53690 * 109.34155 * 265.60074 * 13 12 11 16 16 N 1.47885 * 107.36887 * 127.24454 * 15 13 12 17 17 C 1.36934 * 125.18192 * 181.07658 * 16 15 13 18 18 H 1.08006 * 120.00221 * 180.47880 * 17 16 15 19 19 C 1.38811 * 120.00211 * 0.47838 * 17 16 15 20 20 N 1.31614 * 119.99697 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47070 * 90.00247 * 21 19 17 23 23 H 1.48503 * 109.47264 * 210.00076 * 21 19 17 24 24 H 1.48507 * 109.47238 * 330.00083 * 21 19 17 25 25 C 1.46743 * 109.48588 * 1.49020 * 16 15 13 26 26 C 1.53930 * 106.72495 * 341.24252 * 25 16 15 27 27 H 1.08996 * 113.01425 * 150.83244 * 26 25 16 28 28 C 1.46780 * 125.34164 * 359.69797 * 11 9 8 29 29 H 1.08995 * 109.47341 * 89.97755 * 1 2 3 30 30 H 1.08996 * 109.47350 * 209.97848 * 1 2 3 31 31 H 1.09007 * 109.47133 * 329.97670 * 1 2 3 32 32 H 1.08995 * 109.76621 * 300.16898 * 12 11 9 33 33 H 1.09004 * 109.76693 * 60.92426 * 12 11 9 34 34 H 1.08996 * 109.76482 * 247.19788 * 15 13 12 35 35 H 1.09004 * 109.75995 * 7.91464 * 15 13 12 36 36 H 0.97010 * 119.99959 * 180.02562 * 20 19 17 37 37 H 1.09006 * 110.01179 * 221.92531 * 25 16 15 38 38 H 1.09005 * 110.00647 * 100.56106 * 25 16 15 39 39 H 1.09002 * 110.02456 * 280.77269 * 28 11 9 40 40 H 1.08996 * 110.02544 * 42.18766 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0018 2.0048 0.0004 5 7 3.6339 0.6554 -0.0006 6 6 3.6598 -0.6497 -0.0004 7 17 5.0842 -1.6421 -0.0073 8 6 2.3241 -1.1129 -0.0005 9 6 1.8859 -2.5202 -0.0006 10 8 1.7056 -3.1009 1.0526 11 7 1.6850 -3.1634 -1.1678 12 6 1.2503 -4.5575 -1.3044 13 6 1.1634 -4.8818 -2.8045 14 1 1.5356 -5.8790 -3.0391 15 6 -0.2779 -4.6611 -3.2903 16 7 -0.2157 -3.7632 -4.4637 17 6 -1.2985 -3.3116 -5.1699 18 1 -1.1555 -2.6624 -6.0212 19 6 -2.5799 -3.6882 -4.7919 20 7 -2.7542 -4.4790 -3.7543 21 14 -4.0570 -3.0717 -5.7549 22 1 -4.3677 -4.0259 -6.8495 23 1 -5.2278 -2.9605 -4.8481 24 1 -3.7500 -1.7385 -6.3326 25 6 1.1849 -3.4400 -4.7590 26 6 1.9904 -3.7561 -3.4859 27 1 3.0205 -4.0448 -3.6942 28 6 1.8604 -2.5765 -2.5017 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 1.9735 -5.2177 -0.8257 33 1 0.2714 -4.6854 -0.8421 34 1 -0.7238 -5.6163 -3.5675 35 1 -0.8662 -4.1955 -2.4994 36 1 -3.6497 -4.7426 -3.4903 37 1 1.2794 -2.3828 -5.0073 38 1 1.5420 -4.0514 -5.5878 39 1 0.9943 -1.9663 -2.7579 40 1 2.7655 -1.9697 -2.5264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048854156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:05 Heat of formation + Delta-G solvation = 66.883754 kcal Electronic energy + Delta-G solvation = -26010.845247 eV Core-core repulsion = 22274.968110 eV Total energy + Delta-G solvation = -3735.877137 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69059 -39.85825 -37.92724 -36.96933 -34.83126 -32.85995 -32.33406 -31.52292 -30.15466 -29.38130 -27.68391 -25.56322 -25.44696 -23.47794 -22.12344 -21.62041 -20.11138 -19.28983 -19.02267 -17.80843 -16.91068 -16.49824 -15.90980 -15.43968 -15.39774 -14.92195 -14.68331 -14.30378 -13.71099 -13.55778 -13.30754 -13.14642 -12.81708 -12.58399 -12.49083 -12.11337 -12.04147 -11.96142 -11.84568 -11.47397 -11.43616 -10.94238 -10.89773 -10.82634 -10.40332 -10.11910 -10.10192 -9.88254 -9.78822 -9.63496 -9.62861 -8.87765 -8.64569 -8.27879 -6.87337 -5.75897 -3.09390 1.29201 1.36270 2.03333 2.67906 2.73411 3.36027 3.39678 3.41590 3.43256 4.34094 4.45577 4.60830 4.71677 4.87939 4.97585 5.15712 5.28689 5.32528 5.47643 5.56076 5.61277 5.63932 5.66353 5.72909 5.82031 5.93531 6.00056 6.19858 6.30479 6.39692 6.55705 6.58590 6.65413 6.76869 6.81527 7.08255 7.53070 7.54638 7.77600 7.79846 8.20934 8.38509 9.16708 9.78205 10.42526 11.35598 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.004103 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.289525 B = 6822.147965 C = 7443.260997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.279 5.279 6 C 0.161 3.839 7 Cl 0.018 6.982 8 C -0.262 4.262 9 C 0.609 3.391 10 O -0.537 6.537 11 N -0.595 5.595 12 C 0.121 3.879 13 C -0.124 4.124 14 H 0.090 0.910 15 C 0.186 3.814 16 N -0.604 5.604 17 C -0.229 4.229 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.147 3.853 26 C -0.110 4.110 27 H 0.090 0.910 28 C 0.118 3.882 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.252 0.748 37 H 0.037 0.963 38 H 0.019 0.981 39 H 0.077 0.923 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.823 8.219 6.234 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.017 3.983 3 N -0.158 5.158 4 H 0.294 0.706 5 N -0.105 5.105 6 C -0.032 4.032 7 Cl 0.046 6.954 8 C -0.277 4.277 9 C 0.395 3.605 10 O -0.414 6.414 11 N -0.327 5.327 12 C -0.002 4.002 13 C -0.143 4.143 14 H 0.108 0.892 15 C 0.062 3.938 16 N -0.331 5.331 17 C -0.357 4.357 18 H 0.095 0.905 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.020 3.980 26 C -0.130 4.130 27 H 0.108 0.892 28 C -0.005 4.005 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.095 0.905 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.342 8.865 6.881 15.956 hybrid contribution -1.201 0.027 -0.595 1.340 sum 10.141 8.892 6.286 14.881 Atomic orbital electron populations 1.20683 0.85361 1.05006 1.05114 1.21458 0.94986 0.85826 0.96007 1.45805 1.02946 1.08630 1.58404 0.70585 1.77106 0.96676 1.10627 1.26087 1.22491 0.88608 0.90449 1.01652 1.98413 1.35323 1.64919 1.96760 1.19714 0.91050 0.94475 1.22451 1.16652 0.77233 0.84091 0.82513 1.90780 1.52162 1.67754 1.30716 1.48163 1.65600 1.13285 1.05618 1.21861 1.00113 0.81276 0.96902 1.23157 1.00147 0.98366 0.92672 0.89158 1.21341 0.87917 0.94832 0.89756 1.44513 0.99744 1.55632 1.33179 1.19026 0.84047 1.24361 1.08307 0.90500 1.24769 0.97313 0.99902 0.98240 1.69948 1.20770 1.38762 1.27304 0.86158 0.82597 0.78266 0.78933 1.21615 1.21712 1.20775 1.21134 0.85877 0.97778 0.93178 1.22930 0.99065 0.94742 0.96274 0.89173 1.22049 1.01155 0.96236 0.81037 0.88348 0.88609 0.89998 0.92126 0.90701 0.93737 0.92786 0.93709 0.94515 0.96305 0.90456 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.25 36.01 0.37 -0.65 16 2 C 0.15 1.78 7.29 -81.60 -0.60 1.19 16 3 N -0.45 -4.59 7.28 33.86 0.25 -4.34 16 4 H 0.45 2.78 8.96 -182.73 -1.64 1.14 16 5 N -0.28 -3.67 12.64 33.18 0.42 -3.25 16 6 C 0.16 2.29 7.89 -16.91 -0.13 2.15 16 7 Cl 0.02 0.24 29.19 -51.86 -1.51 -1.28 16 8 C -0.26 -3.89 4.82 -105.04 -0.51 -4.39 16 9 C 0.61 10.48 7.19 -12.54 -0.09 10.39 16 10 O -0.54 -10.84 17.42 5.27 0.09 -10.74 16 11 N -0.59 -9.90 3.31 -173.44 -0.57 -10.47 16 12 C 0.12 2.04 6.24 -3.57 -0.02 2.02 16 13 C -0.12 -2.14 3.97 -88.60 -0.35 -2.49 16 14 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 15 C 0.19 4.19 4.83 -2.92 -0.01 4.17 16 16 N -0.60 -14.30 3.40 -170.92 -0.58 -14.88 16 17 C -0.23 -6.03 10.25 -15.06 -0.15 -6.18 16 18 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 20 N -0.92 -25.83 10.25 55.49 0.57 -25.26 16 21 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.15 2.78 6.37 -3.43 -0.02 2.76 16 26 C -0.11 -1.75 4.19 -88.24 -0.37 -2.12 16 27 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 28 C 0.12 1.86 5.85 -3.28 -0.02 1.84 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.10 1.11 7.96 -51.93 -0.41 0.70 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.38 7.42 -51.93 -0.39 0.99 16 34 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 35 H 0.05 1.37 6.48 -51.93 -0.34 1.03 16 36 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.04 0.67 7.95 -51.93 -0.41 0.26 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 1.36 7.72 -51.93 -0.40 0.96 16 40 H 0.06 0.88 7.81 -51.93 -0.41 0.48 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -32.20 345.78 -9.62 -41.82 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.46 Total: -1.46 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -2.00 Total: 8.43 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: 0.08 Total: -58.20 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.51 Total: -1.28 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.20 -9.62 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048854156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.707 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds