Wall clock time and date at job start Tue Mar 31 2020 13:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34235 * 126.28169 * 2 1 4 4 H 0.97006 * 125.73314 * 0.02562 * 3 2 1 5 5 N 1.39922 * 108.52626 * 180.02562 * 3 2 1 6 6 C 1.30534 * 108.89290 * 359.97438 * 5 3 2 7 7 Cl 1.73602 * 126.00341 * 179.73927 * 6 5 3 8 8 C 1.38066 * 126.28396 * 180.02562 * 2 1 3 9 9 C 1.47392 * 126.42120 * 359.97438 * 8 2 1 10 10 O 1.21608 * 119.99508 * 269.99840 * 9 8 2 11 11 N 1.34771 * 120.00026 * 89.99385 * 9 8 2 12 12 C 1.46676 * 125.33936 * 180.02562 * 11 9 8 13 13 C 1.53720 * 107.94477 * 180.54659 * 12 11 9 14 14 H 1.08997 * 112.56136 * 139.71810 * 13 12 11 15 15 C 1.53690 * 109.34155 * 265.60074 * 13 12 11 16 16 N 1.47885 * 107.36887 * 127.24454 * 15 13 12 17 17 C 1.36934 * 125.18192 * 181.07658 * 16 15 13 18 18 H 1.08006 * 120.00221 * 180.47880 * 17 16 15 19 19 C 1.38811 * 120.00211 * 0.47838 * 17 16 15 20 20 N 1.31614 * 119.99697 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47070 * 90.00247 * 21 19 17 23 23 H 1.48503 * 109.47264 * 210.00076 * 21 19 17 24 24 H 1.48507 * 109.47238 * 330.00083 * 21 19 17 25 25 C 1.46743 * 109.48588 * 1.49020 * 16 15 13 26 26 C 1.53930 * 106.72495 * 341.24252 * 25 16 15 27 27 H 1.08996 * 113.01425 * 150.83244 * 26 25 16 28 28 C 1.46780 * 125.34164 * 359.69797 * 11 9 8 29 29 H 1.08995 * 109.47341 * 89.97755 * 1 2 3 30 30 H 1.08996 * 109.47350 * 209.97848 * 1 2 3 31 31 H 1.09007 * 109.47133 * 329.97670 * 1 2 3 32 32 H 1.08995 * 109.76621 * 300.16898 * 12 11 9 33 33 H 1.09004 * 109.76693 * 60.92426 * 12 11 9 34 34 H 1.08996 * 109.76482 * 247.19788 * 15 13 12 35 35 H 1.09004 * 109.75995 * 7.91464 * 15 13 12 36 36 H 0.97010 * 119.99959 * 180.02562 * 20 19 17 37 37 H 1.09006 * 110.01179 * 221.92531 * 25 16 15 38 38 H 1.09005 * 110.00647 * 100.56106 * 25 16 15 39 39 H 1.09002 * 110.02456 * 280.77269 * 28 11 9 40 40 H 1.08996 * 110.02544 * 42.18766 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0018 2.0048 0.0004 5 7 3.6339 0.6554 -0.0006 6 6 3.6598 -0.6497 -0.0004 7 17 5.0842 -1.6421 -0.0073 8 6 2.3241 -1.1129 -0.0005 9 6 1.8859 -2.5202 -0.0006 10 8 1.7056 -3.1009 1.0526 11 7 1.6850 -3.1634 -1.1678 12 6 1.2503 -4.5575 -1.3044 13 6 1.1634 -4.8818 -2.8045 14 1 1.5356 -5.8790 -3.0391 15 6 -0.2779 -4.6611 -3.2903 16 7 -0.2157 -3.7632 -4.4637 17 6 -1.2985 -3.3116 -5.1699 18 1 -1.1555 -2.6624 -6.0212 19 6 -2.5799 -3.6882 -4.7919 20 7 -2.7542 -4.4790 -3.7543 21 14 -4.0570 -3.0717 -5.7549 22 1 -4.3677 -4.0259 -6.8495 23 1 -5.2278 -2.9605 -4.8481 24 1 -3.7500 -1.7385 -6.3326 25 6 1.1849 -3.4400 -4.7590 26 6 1.9904 -3.7561 -3.4859 27 1 3.0205 -4.0448 -3.6942 28 6 1.8604 -2.5765 -2.5017 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 1.9735 -5.2177 -0.8257 33 1 0.2714 -4.6854 -0.8421 34 1 -0.7238 -5.6163 -3.5675 35 1 -0.8662 -4.1955 -2.4994 36 1 -3.6497 -4.7426 -3.4903 37 1 1.2794 -2.3828 -5.0073 38 1 1.5420 -4.0514 -5.5878 39 1 0.9943 -1.9663 -2.7579 40 1 2.7655 -1.9697 -2.5264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048854156.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:04 Heat of formation + Delta-G solvation = 45.549368 kcal Electronic energy + Delta-G solvation = -26011.770375 eV Core-core repulsion = 22274.968110 eV Total energy + Delta-G solvation = -3736.802266 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.70809 -41.24206 -39.38397 -37.97392 -36.47322 -34.10003 -33.78352 -32.73257 -31.53525 -31.03796 -28.69009 -27.25224 -26.98068 -24.97589 -23.11071 -22.89682 -21.75568 -20.73491 -20.23179 -19.00974 -18.61701 -17.82974 -17.30806 -16.51470 -16.48316 -16.38132 -16.14898 -15.78291 -15.45807 -14.72363 -14.61823 -14.31975 -14.14518 -13.96010 -13.57946 -13.54258 -13.35664 -13.21042 -13.03900 -13.02442 -12.84303 -12.71716 -12.62234 -11.98330 -11.93018 -11.82300 -11.80580 -11.50449 -11.32816 -11.14849 -10.64674 -10.58803 -9.92854 -9.65689 -8.81839 -7.79475 -5.13705 0.31620 0.39770 0.95526 1.41209 1.49384 1.50432 1.58666 1.75421 2.16197 2.53695 3.28603 3.39119 3.45945 3.58994 3.69821 3.80712 3.91841 3.96282 4.07529 4.29357 4.34261 4.52861 4.56263 4.59123 4.63059 4.69633 4.76610 4.89415 4.96756 4.99783 5.08282 5.12631 5.28537 5.42105 5.54119 5.69436 5.84000 5.92032 6.20248 6.25512 6.46790 7.05141 7.15609 7.84564 8.47485 9.30591 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.016188 B = 0.004103 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.289525 B = 6822.147965 C = 7443.260997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.164 3.836 3 N -0.425 5.425 4 H 0.467 0.533 5 N -0.287 5.287 6 C 0.153 3.847 7 Cl 0.022 6.978 8 C -0.294 4.294 9 C 0.612 3.388 10 O -0.574 6.574 11 N -0.595 5.595 12 C 0.124 3.876 13 C -0.112 4.112 14 H 0.114 0.886 15 C 0.199 3.801 16 N -0.623 5.623 17 C -0.235 4.235 18 H 0.083 0.917 19 C -0.062 4.062 20 N -0.950 5.950 21 Si 0.971 3.029 22 H -0.290 1.290 23 H -0.298 1.298 24 H -0.268 1.268 25 C 0.142 3.858 26 C -0.094 4.094 27 H 0.131 0.869 28 C 0.125 3.875 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.006 0.994 35 H 0.016 0.984 36 H 0.244 0.756 37 H 0.046 0.954 38 H 0.029 0.971 39 H 0.056 0.944 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.307 9.926 5.502 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.030 3.970 3 N -0.137 5.137 4 H 0.317 0.683 5 N -0.113 5.113 6 C -0.040 4.040 7 Cl 0.049 6.951 8 C -0.309 4.309 9 C 0.400 3.600 10 O -0.454 6.454 11 N -0.326 5.326 12 C 0.001 3.999 13 C -0.131 4.131 14 H 0.132 0.868 15 C 0.074 3.926 16 N -0.350 5.350 17 C -0.364 4.364 18 H 0.101 0.899 19 C -0.255 4.255 20 N -0.599 5.599 21 Si 0.800 3.200 22 H -0.217 1.217 23 H -0.225 1.225 24 H -0.192 1.192 25 C 0.017 3.983 26 C -0.114 4.114 27 H 0.148 0.852 28 C 0.003 3.997 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.035 0.965 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.869 10.625 6.113 17.773 hybrid contribution -1.672 -0.461 -0.388 1.777 sum 11.198 10.164 5.725 16.170 Atomic orbital electron populations 1.20742 0.84002 1.05904 1.05295 1.21630 0.95649 0.85498 0.94240 1.45804 1.01868 1.09313 1.56713 0.68253 1.77069 0.97947 1.10080 1.26155 1.22549 0.88545 0.90784 1.02088 1.98407 1.34976 1.64918 1.96751 1.19635 0.92061 0.93778 1.25440 1.16964 0.76266 0.84879 0.81885 1.90750 1.53847 1.68873 1.31947 1.48222 1.65168 1.13145 1.06042 1.21761 0.99459 0.82142 0.96506 1.23004 0.96926 1.00339 0.92851 0.86780 1.20994 0.90733 0.92339 0.88522 1.44789 1.01343 1.55671 1.33168 1.19410 0.85091 1.23658 1.08285 0.89894 1.25527 0.99908 1.00710 0.99392 1.70178 1.20478 1.40307 1.28930 0.85185 0.79193 0.78232 0.77358 1.21747 1.22493 1.19235 1.21327 0.83710 0.98414 0.94863 1.22978 1.00293 0.93739 0.94357 0.85159 1.21983 1.01201 0.96145 0.80388 0.88389 0.90711 0.86132 0.90294 0.93179 0.97585 0.96540 0.94644 0.93578 0.95348 0.92582 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 10.25 71.24 0.73 -1.12 16 2 C 0.16 3.62 7.29 42.15 0.31 3.93 16 3 N -0.43 -7.59 7.28 -46.79 -0.34 -7.93 16 4 H 0.47 4.26 8.96 -213.43 -1.91 2.35 16 5 N -0.29 -6.89 12.64 -48.95 -0.62 -7.51 16 6 C 0.15 4.10 7.89 85.66 0.68 4.77 16 7 Cl 0.02 0.54 29.19 -2.72 -0.08 0.46 16 8 C -0.29 -8.38 4.82 -20.13 -0.10 -8.48 16 9 C 0.61 20.90 7.19 86.65 0.62 21.52 16 10 O -0.57 -23.47 17.42 -4.06 -0.07 -23.54 16 11 N -0.59 -19.38 3.31 -820.89 -2.72 -22.10 16 12 C 0.12 4.15 6.24 86.59 0.54 4.70 16 13 C -0.11 -3.75 3.97 -9.49 -0.04 -3.79 16 14 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 15 C 0.20 9.22 4.83 86.35 0.42 9.63 16 16 N -0.62 -29.54 3.40 -694.67 -2.36 -31.90 16 17 C -0.24 -12.42 10.25 84.03 0.86 -11.55 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.06 -3.40 5.48 84.86 0.47 -2.93 16 20 N -0.95 -55.34 10.25 21.65 0.22 -55.12 16 21 Si 0.97 44.14 29.55 68.60 2.03 46.16 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 C 0.14 5.10 6.37 86.65 0.55 5.65 16 26 C -0.09 -2.74 4.19 -9.25 -0.04 -2.78 16 27 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 28 C 0.13 3.72 5.85 86.72 0.51 4.22 16 29 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 1.73 7.96 -2.39 -0.02 1.72 16 31 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.05 1.93 7.42 -2.38 -0.02 1.91 16 34 H 0.01 0.31 7.51 -2.39 -0.02 0.30 16 35 H 0.02 0.88 6.48 -2.38 -0.02 0.86 16 36 H 0.24 14.03 8.31 -92.70 -0.77 13.26 16 37 H 0.05 1.58 7.95 -2.38 -0.02 1.56 16 38 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.06 1.92 7.72 -2.39 -0.02 1.90 16 40 H 0.08 2.15 7.81 -2.39 -0.02 2.13 16 Total: -1.00 -71.95 345.78 0.74 -71.21 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -0.83 Total: 6.51 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 5.51 Total: 23.76 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -5.82 Total: -124.56 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.07 Total: -23.54 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -0.08 Total: 0.46 kcal Total: -71.95 0.74 -71.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048854156.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.762 kcal (2) G-P(sol) polarization free energy of solvation -71.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds