Wall clock time and date at job start Tue Mar 31 2020 13:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48493 * 109.46991 * 269.99274 * 3 2 1 5 5 H 1.48497 * 109.47127 * 29.99617 * 3 2 1 6 6 H 1.48506 * 109.46992 * 149.99615 * 3 2 1 7 7 C 1.38813 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00130 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.48384 * 126.56346 * 359.96448 * 9 7 2 11 11 C 1.55469 * 106.97419 * 174.50346 * 10 9 7 12 12 C 1.53434 * 101.67203 * 337.40018 * 11 10 9 13 13 H 1.08999 * 111.75228 * 281.77815 * 12 11 10 14 14 C 1.45031 * 126.56018 * 179.97438 * 9 7 2 15 15 H 1.08998 * 108.70793 * 95.86442 * 14 9 7 16 16 C 1.51083 * 118.75552 * 330.92400 * 14 9 7 17 17 C 1.53870 * 107.33919 * 176.39942 * 16 14 9 18 18 C 1.52622 * 111.90984 * 55.96510 * 17 16 14 19 19 N 1.45721 * 116.37921 * 152.73503 * 12 11 10 20 20 C 1.34787 * 122.22657 * 9.88851 * 19 12 11 21 21 O 1.21738 * 119.99719 * 4.68974 * 20 19 12 22 22 C 1.46282 * 119.99804 * 184.68546 * 20 19 12 23 23 S 1.75821 * 125.46808 * 313.26345 * 22 20 19 24 24 C 1.70604 * 91.60913 * 180.02562 * 23 22 20 25 25 C 1.33727 * 111.03847 * 359.97438 * 24 23 22 26 26 C 1.36934 * 125.46451 * 133.28478 * 22 20 19 27 27 F 1.35100 * 123.40120 * 0.02562 * 26 22 20 28 28 H 0.97009 * 119.99745 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.96112 * 293.88586 * 10 9 7 30 30 H 1.09000 * 109.95669 * 55.12762 * 10 9 7 31 31 H 1.09008 * 110.98469 * 219.30670 * 11 10 9 32 32 H 1.08991 * 110.98920 * 95.49779 * 11 10 9 33 33 H 1.08995 * 109.88270 * 295.86309 * 16 14 9 34 34 H 1.09001 * 109.88418 * 56.94344 * 16 14 9 35 35 H 1.09005 * 109.06826 * 177.45113 * 17 16 14 36 36 H 1.09000 * 109.06952 * 296.46738 * 17 16 14 37 37 H 1.09003 * 109.60227 * 191.80839 * 18 17 16 38 38 H 1.08997 * 108.19440 * 72.93862 * 18 17 16 39 39 H 1.07998 * 124.47934 * 180.02562 * 24 23 22 40 40 H 1.08007 * 122.45094 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1487 -2.5576 0.0007 11 6 -0.4305 -4.0799 -0.1418 12 6 0.8710 -4.5777 -0.7840 13 1 0.9034 -4.3605 -1.8517 14 6 1.9023 -3.7187 0.0005 15 1 1.9446 -4.0814 1.0275 16 6 3.2535 -3.9252 -0.6431 17 6 3.6504 -5.3942 -0.4152 18 6 2.5937 -6.3587 -0.9467 19 7 1.2342 -5.9641 -0.5202 20 6 0.3887 -6.8274 0.0769 21 8 -0.7493 -6.4826 0.3380 22 6 0.8386 -8.1786 0.4111 23 16 1.7208 -9.2551 -0.6633 24 6 1.7785 -10.4750 0.5279 25 6 1.1698 -10.0787 1.6507 26 6 0.6398 -8.8083 1.6107 27 9 -0.0112 -8.2407 2.6496 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5656 -2.1881 0.9376 30 1 -0.5853 -2.0181 -0.8397 31 1 -1.2828 -4.2594 -0.7972 32 1 -0.5859 -4.5411 0.8334 33 1 3.1903 -3.7197 -1.7117 34 1 3.9888 -3.2666 -0.1810 35 1 4.6031 -5.5864 -0.9087 36 1 3.7616 -5.5712 0.6546 37 1 2.8033 -7.3658 -0.5862 38 1 2.6436 -6.3519 -2.0355 39 1 2.2455 -11.4394 0.3932 40 1 1.0983 -10.7093 2.5247 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049447755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:01 Heat of formation + Delta-G solvation = 1.427628 kcal Electronic energy + Delta-G solvation = -26057.525908 eV Core-core repulsion = 22300.934125 eV Total energy + Delta-G solvation = -3756.591783 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -48.96839 -40.35829 -38.13089 -37.20058 -35.45968 -32.66101 -32.27176 -30.26441 -28.74152 -28.24147 -25.57256 -24.50358 -24.13569 -21.69376 -21.53175 -20.24100 -19.82023 -19.37388 -17.95444 -16.90932 -16.65500 -16.08938 -15.70775 -15.49252 -15.07994 -14.75568 -14.67638 -14.35576 -14.21266 -13.97965 -13.59330 -13.37512 -12.86314 -12.72940 -12.45923 -12.37114 -12.03696 -11.84978 -11.62809 -11.47044 -11.08696 -10.83586 -10.71612 -10.55494 -10.47700 -10.09509 -10.03103 -9.85781 -9.60357 -9.34937 -9.05270 -8.67269 -8.58196 -8.28320 -6.81749 -5.68354 -3.02842 0.20790 0.96687 1.44499 1.98040 2.83921 3.18330 3.41412 3.46186 3.48594 4.05338 4.39960 4.50698 4.68202 4.79596 4.96529 5.02258 5.21756 5.34111 5.36178 5.42611 5.48943 5.60626 5.64527 5.75414 5.84691 5.97479 6.02367 6.07395 6.23601 6.28524 6.37903 6.54702 6.71057 6.76089 6.89164 7.15495 7.54820 7.61003 7.68620 7.85463 8.25050 8.28043 9.20762 9.84624 10.52811 11.43676 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.003637 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.204944 B = 7697.111549 C = 8228.208561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.129 4.129 12 C 0.117 3.883 13 H 0.084 0.916 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.100 3.900 19 N -0.590 5.590 20 C 0.590 3.410 21 O -0.509 6.509 22 C -0.300 4.300 23 S 0.263 5.737 24 C -0.228 4.228 25 C -0.171 4.171 26 C 0.146 3.854 27 F -0.109 7.109 28 H 0.253 0.747 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.178 0.822 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.983 -22.618 -2.397 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.168 4.168 12 C 0.014 3.986 13 H 0.102 0.898 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.154 4.154 17 C -0.167 4.167 18 C -0.024 4.024 19 N -0.323 5.323 20 C 0.376 3.624 21 O -0.386 6.386 22 C -0.422 4.422 23 S 0.530 5.470 24 C -0.366 4.366 25 C -0.203 4.203 26 C 0.112 3.888 27 F -0.088 7.088 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.195 0.805 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.802 -22.066 -3.673 23.381 hybrid contribution -0.074 0.673 1.779 1.903 sum 6.728 -21.392 -1.894 22.505 Atomic orbital electron populations 1.69951 1.04891 1.25068 1.56718 1.24807 0.95666 0.97620 1.02226 0.86145 0.78590 0.83660 0.77509 1.21630 1.21698 1.20737 1.18984 0.90329 0.82173 1.44032 0.90329 1.44089 1.01793 0.99283 1.86535 1.21750 0.83649 0.88597 1.01211 1.22943 0.94618 0.97997 1.01198 1.22485 0.98998 0.77685 0.99473 0.89786 1.20774 0.91381 0.87258 0.95706 0.96437 1.21438 0.98569 0.94005 1.01379 1.21867 0.97463 0.95603 1.01781 1.21970 0.81872 0.98622 0.99901 1.47886 1.14011 1.11563 1.58804 1.16648 0.85067 0.82311 0.78407 1.90887 1.18051 1.76632 1.53027 1.24748 1.14836 1.02408 1.00164 1.83202 1.48565 1.01415 1.13856 1.25169 1.06609 1.06068 0.98743 1.19810 1.03572 0.95510 1.01385 1.16826 0.96121 0.91529 0.84308 1.91573 1.77980 1.84381 1.54822 0.93708 0.94183 0.92410 0.91781 0.90387 0.91602 0.91257 0.90503 0.91927 0.90265 0.91111 0.80462 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.33 10.46 55.49 0.58 -26.75 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 8 H 0.08 2.07 7.28 -52.49 -0.38 1.69 16 9 N -0.59 -15.26 3.35 -163.30 -0.55 -15.81 16 10 C 0.17 4.41 5.47 -1.69 -0.01 4.40 16 11 C -0.13 -2.81 4.94 -25.19 -0.12 -2.94 16 12 C 0.12 2.26 3.32 -66.82 -0.22 2.04 16 13 H 0.08 1.60 8.13 -51.93 -0.42 1.18 16 14 C 0.16 3.33 2.58 -68.37 -0.18 3.15 16 15 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 16 C -0.12 -1.95 5.44 -27.24 -0.15 -2.10 16 17 C -0.13 -1.61 5.92 -26.47 -0.16 -1.77 16 18 C 0.10 1.20 5.91 -3.50 -0.02 1.18 16 19 N -0.59 -9.59 2.92 -165.74 -0.48 -10.08 16 20 C 0.59 10.19 7.39 -13.02 -0.10 10.09 16 21 O -0.51 -10.65 14.06 5.16 0.07 -10.58 16 22 C -0.30 -4.06 5.50 -36.82 -0.20 -4.26 16 23 S 0.26 2.21 20.08 -107.50 -2.16 0.06 16 24 C -0.23 -1.60 10.91 29.15 0.32 -1.28 16 25 C -0.17 -1.56 10.15 -41.35 -0.42 -1.98 16 26 C 0.15 1.92 7.49 -40.24 -0.30 1.62 16 27 F -0.11 -1.72 17.23 2.25 0.04 -1.68 16 28 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.04 1.13 7.81 -51.93 -0.41 0.72 16 30 H 0.06 1.60 7.19 -51.93 -0.37 1.22 16 31 H 0.06 1.35 8.14 -51.92 -0.42 0.92 16 32 H 0.08 1.80 6.36 -51.93 -0.33 1.47 16 33 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 34 H 0.07 1.22 7.67 -51.93 -0.40 0.82 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.79 4.29 -34.79 -0.15 0.64 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.16 1.07 8.06 -52.48 -0.42 0.64 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -33.37 331.30 -9.31 -42.68 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.97 Total: -1.38 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.80 Total: 1.46 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.45 Total: -52.64 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.16 Total: 0.06 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.37 -9.31 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049447755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.105 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds