Wall clock time and date at job start Tue Mar 31 2020 13:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00060 * 2 1 4 4 H 1.48493 * 109.46991 * 269.99274 * 3 2 1 5 5 H 1.48497 * 109.47127 * 29.99617 * 3 2 1 6 6 H 1.48506 * 109.46992 * 149.99615 * 3 2 1 7 7 C 1.38813 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00130 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.48384 * 126.56346 * 359.96448 * 9 7 2 11 11 C 1.55469 * 106.97419 * 174.50346 * 10 9 7 12 12 C 1.53434 * 101.67203 * 337.40018 * 11 10 9 13 13 H 1.08999 * 111.75228 * 281.77815 * 12 11 10 14 14 C 1.45031 * 126.56018 * 179.97438 * 9 7 2 15 15 H 1.08998 * 108.70793 * 95.86442 * 14 9 7 16 16 C 1.51083 * 118.75552 * 330.92400 * 14 9 7 17 17 C 1.53870 * 107.33919 * 176.39942 * 16 14 9 18 18 C 1.52622 * 111.90984 * 55.96510 * 17 16 14 19 19 N 1.45721 * 116.37921 * 152.73503 * 12 11 10 20 20 C 1.34787 * 122.22657 * 9.88851 * 19 12 11 21 21 O 1.21738 * 119.99719 * 4.68974 * 20 19 12 22 22 C 1.46282 * 119.99804 * 184.68546 * 20 19 12 23 23 S 1.75821 * 125.46808 * 313.26345 * 22 20 19 24 24 C 1.70604 * 91.60913 * 180.02562 * 23 22 20 25 25 C 1.33727 * 111.03847 * 359.97438 * 24 23 22 26 26 C 1.36934 * 125.46451 * 133.28478 * 22 20 19 27 27 F 1.35100 * 123.40120 * 0.02562 * 26 22 20 28 28 H 0.97009 * 119.99745 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.96112 * 293.88586 * 10 9 7 30 30 H 1.09000 * 109.95669 * 55.12762 * 10 9 7 31 31 H 1.09008 * 110.98469 * 219.30670 * 11 10 9 32 32 H 1.08991 * 110.98920 * 95.49779 * 11 10 9 33 33 H 1.08995 * 109.88270 * 295.86309 * 16 14 9 34 34 H 1.09001 * 109.88418 * 56.94344 * 16 14 9 35 35 H 1.09005 * 109.06826 * 177.45113 * 17 16 14 36 36 H 1.09000 * 109.06952 * 296.46738 * 17 16 14 37 37 H 1.09003 * 109.60227 * 191.80839 * 18 17 16 38 38 H 1.08997 * 108.19440 * 72.93862 * 18 17 16 39 39 H 1.07998 * 124.47934 * 180.02562 * 24 23 22 40 40 H 1.08007 * 122.45094 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1487 -2.5576 0.0007 11 6 -0.4305 -4.0799 -0.1418 12 6 0.8710 -4.5777 -0.7840 13 1 0.9034 -4.3605 -1.8517 14 6 1.9023 -3.7187 0.0005 15 1 1.9446 -4.0814 1.0275 16 6 3.2535 -3.9252 -0.6431 17 6 3.6504 -5.3942 -0.4152 18 6 2.5937 -6.3587 -0.9467 19 7 1.2342 -5.9641 -0.5202 20 6 0.3887 -6.8274 0.0769 21 8 -0.7493 -6.4826 0.3380 22 6 0.8386 -8.1786 0.4111 23 16 1.7208 -9.2551 -0.6633 24 6 1.7785 -10.4750 0.5279 25 6 1.1698 -10.0787 1.6507 26 6 0.6398 -8.8083 1.6107 27 9 -0.0112 -8.2407 2.6496 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5656 -2.1881 0.9376 30 1 -0.5853 -2.0181 -0.8397 31 1 -1.2828 -4.2594 -0.7972 32 1 -0.5859 -4.5411 0.8334 33 1 3.1903 -3.7197 -1.7117 34 1 3.9888 -3.2666 -0.1810 35 1 4.6031 -5.5864 -0.9087 36 1 3.7616 -5.5712 0.6546 37 1 2.8033 -7.3658 -0.5862 38 1 2.6436 -6.3519 -2.0355 39 1 2.2455 -11.4394 0.3932 40 1 1.0983 -10.7093 2.5247 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049447755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:00 Heat of formation + Delta-G solvation = -20.282042 kcal Electronic energy + Delta-G solvation = -26058.467310 eV Core-core repulsion = 22300.934125 eV Total energy + Delta-G solvation = -3757.533185 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.03559 -41.77027 -39.47564 -38.18734 -37.01688 -34.32919 -33.95324 -31.57049 -30.34492 -29.72856 -26.76815 -26.34918 -25.29773 -23.02632 -22.92771 -21.82753 -21.20123 -20.49796 -19.13862 -18.41897 -17.93707 -17.32445 -17.09369 -16.79790 -16.57704 -16.32780 -15.78153 -15.59978 -15.51485 -15.15071 -14.91562 -14.83682 -14.36929 -14.13139 -13.89755 -13.61112 -13.44480 -13.17771 -13.01659 -12.85659 -12.70832 -12.41654 -12.21927 -12.07507 -11.90192 -11.81491 -11.76323 -11.60844 -11.50178 -10.84163 -10.67777 -9.99237 -9.65547 -9.38449 -8.94363 -7.84986 -5.22721 -0.61474 0.17822 0.76531 1.19349 1.45745 1.48647 1.56745 1.60804 1.96917 2.49888 3.23009 3.28130 3.33749 3.46999 3.83205 3.91464 3.93247 3.99977 4.01667 4.17557 4.30150 4.38239 4.49645 4.52151 4.59969 4.67900 4.72482 4.84916 4.88991 4.97561 5.05228 5.10768 5.21164 5.25630 5.36975 5.46476 5.52957 5.56051 5.68046 6.15384 6.30811 6.97251 7.03369 7.73395 8.43618 9.27069 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024746 B = 0.003637 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.204944 B = 7697.111549 C = 8228.208561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.266 1.266 7 C -0.234 4.234 8 H 0.092 0.908 9 N -0.611 5.611 10 C 0.184 3.816 11 C -0.113 4.113 12 C 0.132 3.868 13 H 0.093 0.907 14 C 0.153 3.847 15 H -0.007 1.007 16 C -0.110 4.110 17 C -0.119 4.119 18 C 0.092 3.908 19 N -0.591 5.591 20 C 0.584 3.416 21 O -0.565 6.565 22 C -0.351 4.351 23 S 0.336 5.664 24 C -0.195 4.195 25 C -0.186 4.186 26 C 0.126 3.874 27 F -0.137 7.137 28 H 0.246 0.754 29 H -0.002 1.002 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.055 0.945 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.225 0.775 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.694 -26.065 -4.114 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.810 3.190 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.191 1.191 7 C -0.363 4.363 8 H 0.109 0.891 9 N -0.336 5.336 10 C 0.059 3.941 11 C -0.152 4.152 12 C 0.028 3.972 13 H 0.111 0.889 14 C 0.045 3.955 15 H 0.010 0.990 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.029 4.029 19 N -0.323 5.323 20 C 0.372 3.628 21 O -0.445 6.445 22 C -0.472 4.472 23 S 0.602 5.398 24 C -0.333 4.333 25 C -0.216 4.216 26 C 0.091 3.909 27 F -0.116 7.116 28 H 0.055 0.945 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.141 0.859 36 H 0.074 0.926 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.242 0.758 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 10.585 -25.566 -5.406 28.194 hybrid contribution -1.204 1.615 2.325 3.076 sum 9.381 -23.951 -3.081 25.907 Atomic orbital electron populations 1.70190 1.06617 1.25329 1.58332 1.25730 0.96533 1.01289 1.02645 0.85031 0.77575 0.78814 0.77624 1.20836 1.22597 1.19093 1.19439 0.91106 0.82986 1.42754 0.89053 1.44346 1.01904 1.00910 1.86396 1.21429 0.84143 0.90749 0.97829 1.22648 0.96614 0.95159 1.00730 1.22096 0.96210 0.79799 0.99143 0.88937 1.20942 0.94530 0.84991 0.95079 0.98992 1.21415 0.95218 0.97243 1.00993 1.21866 0.99497 0.92247 1.02139 1.22369 0.79100 0.99708 1.01750 1.47959 1.15778 1.09855 1.58697 1.17214 0.84465 0.83856 0.77253 1.90841 1.20446 1.78184 1.55022 1.24573 1.18495 1.01767 1.02328 1.82868 1.45630 0.99493 1.11795 1.25765 1.03589 1.07015 0.96891 1.19941 1.04340 0.94008 1.03322 1.17519 0.96477 0.93164 0.83722 1.91493 1.78810 1.85135 1.56179 0.94455 0.98408 0.95089 0.91447 0.92223 0.90952 0.92123 0.85924 0.92599 0.87650 0.88169 0.75850 0.80536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.86 10.46 21.65 0.23 -59.63 16 2 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 3 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.23 -13.25 9.93 84.03 0.83 -12.42 16 8 H 0.09 4.81 7.28 -2.91 -0.02 4.79 16 9 N -0.61 -32.89 3.35 -670.55 -2.25 -35.14 16 10 C 0.18 10.15 5.47 86.87 0.48 10.63 16 11 C -0.11 -5.28 4.94 31.59 0.16 -5.12 16 12 C 0.13 5.21 3.32 46.13 0.15 5.36 16 13 H 0.09 3.50 8.13 -2.39 -0.02 3.48 16 14 C 0.15 6.57 2.58 45.49 0.12 6.68 16 15 H -0.01 -0.35 8.05 -2.39 -0.02 -0.37 16 16 C -0.11 -3.55 5.44 30.26 0.16 -3.38 16 17 C -0.12 -2.57 5.92 30.76 0.18 -2.39 16 18 C 0.09 1.89 5.91 86.00 0.51 2.40 16 19 N -0.59 -18.83 2.92 -796.47 -2.33 -21.16 16 20 C 0.58 20.46 7.39 86.33 0.64 21.10 16 21 O -0.56 -25.05 14.06 -4.47 -0.06 -25.12 16 22 C -0.35 -9.06 5.50 24.06 0.13 -8.93 16 23 S 0.34 4.11 20.08 -56.49 -1.13 2.98 16 24 C -0.20 -1.66 10.91 66.79 0.73 -0.93 16 25 C -0.19 -2.80 10.15 21.12 0.21 -2.59 16 26 C 0.13 3.25 7.49 21.84 0.16 3.41 16 27 F -0.14 -4.57 17.23 44.97 0.77 -3.79 16 28 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 29 H 0.00 -0.15 7.81 -2.39 -0.02 -0.16 16 30 H 0.03 1.85 7.19 -2.39 -0.02 1.83 16 31 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 32 H 0.06 3.01 6.36 -2.39 -0.02 3.00 16 33 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 34 H 0.06 2.05 7.67 -2.39 -0.02 2.03 16 35 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.63 4.29 -13.28 -0.06 1.57 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.22 -0.11 8.06 -2.91 -0.02 -0.13 16 40 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -81.62 331.30 3.21 -78.41 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: 1.02 Total: 4.78 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 4.93 Total: 10.24 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -4.35 Total: -115.93 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.06 Total: -25.12 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.77 Total: -3.79 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.13 Total: 2.98 kcal Total: -81.62 3.21 -78.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049447755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.125 kcal (2) G-P(sol) polarization free energy of solvation -81.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds