Wall clock time and date at job start Tue Mar 31 2020 13:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47307 * 264.98062 * 3 2 1 5 5 H 1.48496 * 109.47008 * 24.98424 * 3 2 1 6 6 H 1.48505 * 109.47158 * 144.97938 * 3 2 1 7 7 C 1.38815 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00053 * 188.23474 * 7 2 1 9 9 N 1.36935 * 119.99926 * 8.22951 * 7 2 1 10 10 C 1.48381 * 126.56410 * 3.80877 * 9 7 2 11 11 C 1.55471 * 106.97871 * 185.52496 * 10 9 7 12 12 C 1.53431 * 101.66851 * 22.59896 * 11 10 9 13 13 H 1.08999 * 111.75364 * 78.23045 * 12 11 10 14 14 C 1.45027 * 126.56400 * 183.81082 * 9 7 2 15 15 H 1.09002 * 108.25383 * 263.90439 * 14 9 7 16 16 C 1.51080 * 119.19284 * 28.77462 * 14 9 7 17 17 C 1.53877 * 107.34304 * 183.89212 * 16 14 9 18 18 C 1.52722 * 111.51928 * 303.06676 * 17 16 14 19 19 N 1.45723 * 116.37095 * 207.26843 * 12 11 10 20 20 C 1.34775 * 122.23313 * 350.08375 * 19 12 11 21 21 O 1.21743 * 119.99522 * 356.05111 * 20 19 12 22 22 C 1.46289 * 120.00752 * 176.05016 * 20 19 12 23 23 S 1.75824 * 125.46286 * 49.12633 * 22 20 19 24 24 C 1.70596 * 91.60550 * 179.97438 * 23 22 20 25 25 C 1.33731 * 111.04345 * 0.32912 * 24 23 22 26 26 C 1.36926 * 125.46659 * 229.44123 * 22 20 19 27 27 F 1.35099 * 123.40459 * 359.95230 * 26 22 20 28 28 H 0.97007 * 119.99719 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.95838 * 304.90306 * 10 9 7 30 30 H 1.08996 * 109.95986 * 66.14095 * 10 9 7 31 31 H 1.08993 * 110.98940 * 264.50275 * 11 10 9 32 32 H 1.09003 * 110.98950 * 140.68903 * 11 10 9 33 33 H 1.08998 * 109.88647 * 64.43079 * 16 14 9 34 34 H 1.08997 * 109.94479 * 303.38237 * 16 14 9 35 35 H 1.09003 * 109.06511 * 182.54255 * 17 16 14 36 36 H 1.08996 * 109.01309 * 63.55922 * 17 16 14 37 37 H 1.08997 * 109.16417 * 288.13227 * 18 17 16 38 38 H 1.08999 * 109.11358 * 168.91723 * 18 17 16 39 39 H 1.08002 * 124.47780 * 180.09682 * 24 23 22 40 40 H 1.07992 * 122.45586 * 179.73011 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6038 1.9851 -1.3947 5 1 1.3987 2.6809 0.5913 6 1 3.4907 1.4730 0.8035 7 6 2.0102 -1.2022 -0.0005 8 1 3.0818 -1.2071 0.1334 9 7 1.3360 -2.3819 -0.1708 10 6 -0.1139 -2.5400 -0.4439 11 6 -0.4179 -4.0643 -0.4139 12 6 0.7456 -4.5962 0.4331 13 1 0.5846 -4.4202 1.4967 14 6 1.9024 -3.7159 -0.1187 15 1 2.1228 -4.0333 -1.1379 16 6 3.1188 -3.9670 0.7415 17 6 3.5437 -5.4292 0.5196 18 6 2.4066 -6.3975 0.8387 19 7 1.1495 -5.9743 0.1854 20 6 0.4251 -6.8079 -0.5872 21 8 -0.6406 -6.4400 -1.0466 22 6 0.9193 -8.1546 -0.8738 23 16 1.5200 -9.2964 0.3207 24 6 1.8280 -10.4663 -0.8822 25 6 1.5011 -10.0061 -2.0945 26 6 0.9940 -8.7258 -2.1160 27 9 0.6097 -8.0969 -3.2482 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6950 -2.0294 0.3241 30 1 -0.3542 -2.1318 -1.4256 31 1 -0.3948 -4.4869 -1.4183 32 1 -1.3748 -4.2622 0.0693 33 1 2.8700 -3.8084 1.7908 34 1 3.9270 -3.2975 0.4471 35 1 4.3943 -5.6543 1.1629 36 1 3.8404 -5.5587 -0.5212 37 1 2.2559 -6.4294 1.9177 38 1 2.6758 -7.3929 0.4855 39 1 2.2367 -11.4474 -0.6905 40 1 1.6253 -10.5953 -2.9910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049447759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:05 Heat of formation + Delta-G solvation = 0.979881 kcal Electronic energy + Delta-G solvation = -26059.798603 eV Core-core repulsion = 22303.187404 eV Total energy + Delta-G solvation = -3756.611199 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -48.97546 -40.35664 -38.12519 -37.20260 -35.45831 -32.64833 -32.27175 -30.26862 -28.74151 -28.23375 -25.56795 -24.49803 -24.13658 -21.67692 -21.53393 -20.25350 -19.82427 -19.37416 -17.95395 -16.92229 -16.65487 -16.08316 -15.70073 -15.48788 -15.08574 -14.76067 -14.67158 -14.33968 -14.20439 -13.96633 -13.59624 -13.38247 -12.86734 -12.73131 -12.46509 -12.36111 -12.03460 -11.84241 -11.62415 -11.47345 -11.10874 -10.83453 -10.71925 -10.54364 -10.47989 -10.11519 -10.01799 -9.84527 -9.62018 -9.33218 -9.03406 -8.68647 -8.60901 -8.28706 -6.81325 -5.66548 -3.03945 0.21485 0.96034 1.44574 1.98280 2.83441 3.18040 3.41852 3.46802 3.48521 4.05289 4.40034 4.50923 4.68274 4.79441 4.96287 5.05594 5.22089 5.33709 5.35534 5.43017 5.48743 5.59677 5.64497 5.75528 5.85073 5.98118 6.02230 6.07574 6.24047 6.29097 6.38648 6.54646 6.71782 6.76886 6.89190 7.15864 7.51694 7.59963 7.69001 7.86065 8.25965 8.28966 9.19896 9.84652 10.52735 11.42415 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024843 B = 0.003621 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.788854 B = 7731.449243 C = 8196.968394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.165 3.835 11 C -0.128 4.128 12 C 0.117 3.883 13 H 0.085 0.915 14 C 0.158 3.842 15 H 0.018 0.982 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.100 3.900 19 N -0.590 5.590 20 C 0.590 3.410 21 O -0.510 6.510 22 C -0.299 4.299 23 S 0.263 5.737 24 C -0.228 4.228 25 C -0.170 4.170 26 C 0.144 3.856 27 F -0.110 7.110 28 H 0.253 0.747 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.178 0.822 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -22.767 2.236 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.315 5.315 10 C 0.040 3.960 11 C -0.166 4.166 12 C 0.013 3.987 13 H 0.102 0.898 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.154 4.154 17 C -0.167 4.167 18 C -0.023 4.023 19 N -0.323 5.323 20 C 0.375 3.625 21 O -0.387 6.387 22 C -0.420 4.420 23 S 0.529 5.471 24 C -0.365 4.365 25 C -0.202 4.202 26 C 0.111 3.889 27 F -0.088 7.088 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.196 0.804 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.872 -22.274 3.515 23.301 hybrid contribution 0.338 0.755 -1.887 2.060 sum 6.210 -21.519 1.628 22.456 Atomic orbital electron populations 1.69931 1.04942 1.25092 1.56424 1.24800 0.95609 0.97665 1.02243 0.86173 0.78559 0.83568 0.77650 1.21610 1.21743 1.20753 1.18968 0.90950 0.82498 1.43146 0.90367 1.44115 1.04900 0.99324 1.83196 1.21859 0.84660 0.89008 1.00466 1.22918 0.95957 0.97677 1.00086 1.22503 0.98710 0.77853 0.99583 0.89759 1.20799 0.91463 0.87034 0.95843 0.96439 1.21434 0.99150 0.94079 1.00715 1.21889 0.96910 0.95611 1.02269 1.21998 0.84190 0.98443 0.97660 1.47913 1.23235 1.12735 1.48375 1.16661 0.84212 0.82341 0.79267 1.90886 1.21235 1.75253 1.51281 1.24744 1.17020 1.02467 0.97797 1.83205 1.55743 1.00980 1.07155 1.25143 1.07695 1.06103 0.97601 1.19808 1.05374 0.94902 1.00153 1.16820 0.99477 0.91034 0.81606 1.91571 1.88238 1.81605 1.47406 0.93706 0.91018 0.95171 0.90408 0.91767 0.91612 0.91314 0.90644 0.91772 0.90930 0.90356 0.80445 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.18 10.56 55.49 0.59 -26.59 16 2 C -0.01 -0.18 5.46 -17.43 -0.10 -0.28 16 3 Si 0.91 22.15 29.56 -169.99 -5.03 17.12 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.28 9.91 -15.06 -0.15 -6.43 16 8 H 0.08 2.07 7.36 -52.49 -0.39 1.68 16 9 N -0.59 -15.24 3.35 -163.28 -0.55 -15.79 16 10 C 0.16 4.20 5.59 -1.69 -0.01 4.20 16 11 C -0.13 -2.79 4.95 -25.19 -0.12 -2.91 16 12 C 0.12 2.27 3.32 -66.80 -0.22 2.05 16 13 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 14 C 0.16 3.33 2.57 -68.36 -0.18 3.15 16 15 H 0.02 0.41 8.06 -51.93 -0.42 0.00 16 16 C -0.12 -1.96 5.46 -27.24 -0.15 -2.11 16 17 C -0.13 -1.62 5.93 -26.42 -0.16 -1.78 16 18 C 0.10 1.22 5.93 -3.44 -0.02 1.20 16 19 N -0.59 -9.60 2.91 -165.66 -0.48 -10.09 16 20 C 0.59 10.18 7.40 -13.03 -0.10 10.08 16 21 O -0.51 -10.67 14.05 5.15 0.07 -10.59 16 22 C -0.30 -4.03 5.40 -36.82 -0.20 -4.23 16 23 S 0.26 2.22 20.29 -107.50 -2.18 0.03 16 24 C -0.23 -1.59 10.91 29.15 0.32 -1.27 16 25 C -0.17 -1.55 10.15 -41.35 -0.42 -1.97 16 26 C 0.14 1.89 7.50 -40.25 -0.30 1.59 16 27 F -0.11 -1.72 17.23 2.25 0.04 -1.69 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.07 1.99 6.77 -51.93 -0.35 1.64 16 30 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 31 H 0.08 1.80 6.33 -51.93 -0.33 1.47 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 34 H 0.07 1.22 7.72 -51.93 -0.40 0.81 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.78 4.48 -39.25 -0.18 0.61 16 39 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -33.29 331.82 -9.34 -42.63 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.00 Total: -1.32 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.80 Total: 1.28 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.44 Total: -52.47 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.18 Total: 0.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.29 -9.34 -42.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049447759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.605 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds