Wall clock time and date at job start Tue Mar 31 2020 13:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47307 * 264.98062 * 3 2 1 5 5 H 1.48496 * 109.47008 * 24.98424 * 3 2 1 6 6 H 1.48505 * 109.47158 * 144.97938 * 3 2 1 7 7 C 1.38815 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00053 * 188.23474 * 7 2 1 9 9 N 1.36935 * 119.99926 * 8.22951 * 7 2 1 10 10 C 1.48381 * 126.56410 * 3.80877 * 9 7 2 11 11 C 1.55471 * 106.97871 * 185.52496 * 10 9 7 12 12 C 1.53431 * 101.66851 * 22.59896 * 11 10 9 13 13 H 1.08999 * 111.75364 * 78.23045 * 12 11 10 14 14 C 1.45027 * 126.56400 * 183.81082 * 9 7 2 15 15 H 1.09002 * 108.25383 * 263.90439 * 14 9 7 16 16 C 1.51080 * 119.19284 * 28.77462 * 14 9 7 17 17 C 1.53877 * 107.34304 * 183.89212 * 16 14 9 18 18 C 1.52722 * 111.51928 * 303.06676 * 17 16 14 19 19 N 1.45723 * 116.37095 * 207.26843 * 12 11 10 20 20 C 1.34775 * 122.23313 * 350.08375 * 19 12 11 21 21 O 1.21743 * 119.99522 * 356.05111 * 20 19 12 22 22 C 1.46289 * 120.00752 * 176.05016 * 20 19 12 23 23 S 1.75824 * 125.46286 * 49.12633 * 22 20 19 24 24 C 1.70596 * 91.60550 * 179.97438 * 23 22 20 25 25 C 1.33731 * 111.04345 * 0.32912 * 24 23 22 26 26 C 1.36926 * 125.46659 * 229.44123 * 22 20 19 27 27 F 1.35099 * 123.40459 * 359.95230 * 26 22 20 28 28 H 0.97007 * 119.99719 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.95838 * 304.90306 * 10 9 7 30 30 H 1.08996 * 109.95986 * 66.14095 * 10 9 7 31 31 H 1.08993 * 110.98940 * 264.50275 * 11 10 9 32 32 H 1.09003 * 110.98950 * 140.68903 * 11 10 9 33 33 H 1.08998 * 109.88647 * 64.43079 * 16 14 9 34 34 H 1.08997 * 109.94479 * 303.38237 * 16 14 9 35 35 H 1.09003 * 109.06511 * 182.54255 * 17 16 14 36 36 H 1.08996 * 109.01309 * 63.55922 * 17 16 14 37 37 H 1.08997 * 109.16417 * 288.13227 * 18 17 16 38 38 H 1.08999 * 109.11358 * 168.91723 * 18 17 16 39 39 H 1.08002 * 124.47780 * 180.09682 * 24 23 22 40 40 H 1.07992 * 122.45586 * 179.73011 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6038 1.9851 -1.3947 5 1 1.3987 2.6809 0.5913 6 1 3.4907 1.4730 0.8035 7 6 2.0102 -1.2022 -0.0005 8 1 3.0818 -1.2071 0.1334 9 7 1.3360 -2.3819 -0.1708 10 6 -0.1139 -2.5400 -0.4439 11 6 -0.4179 -4.0643 -0.4139 12 6 0.7456 -4.5962 0.4331 13 1 0.5846 -4.4202 1.4967 14 6 1.9024 -3.7159 -0.1187 15 1 2.1228 -4.0333 -1.1379 16 6 3.1188 -3.9670 0.7415 17 6 3.5437 -5.4292 0.5196 18 6 2.4066 -6.3975 0.8387 19 7 1.1495 -5.9743 0.1854 20 6 0.4251 -6.8079 -0.5872 21 8 -0.6406 -6.4400 -1.0466 22 6 0.9193 -8.1546 -0.8738 23 16 1.5200 -9.2964 0.3207 24 6 1.8280 -10.4663 -0.8822 25 6 1.5011 -10.0061 -2.0945 26 6 0.9940 -8.7258 -2.1160 27 9 0.6097 -8.0969 -3.2482 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6950 -2.0294 0.3241 30 1 -0.3542 -2.1318 -1.4256 31 1 -0.3948 -4.4869 -1.4183 32 1 -1.3748 -4.2622 0.0693 33 1 2.8700 -3.8084 1.7908 34 1 3.9270 -3.2975 0.4471 35 1 4.3943 -5.6543 1.1629 36 1 3.8404 -5.5587 -0.5212 37 1 2.2559 -6.4294 1.9177 38 1 2.6758 -7.3929 0.4855 39 1 2.2367 -11.4474 -0.6905 40 1 1.6253 -10.5953 -2.9910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049447759.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:04 Heat of formation + Delta-G solvation = -20.529593 kcal Electronic energy + Delta-G solvation = -26060.731324 eV Core-core repulsion = 22303.187404 eV Total energy + Delta-G solvation = -3757.543920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.03815 -41.77071 -39.47029 -38.18887 -37.01811 -34.32787 -33.94686 -31.57506 -30.34197 -29.72417 -26.76281 -26.34085 -25.30013 -23.01912 -22.92598 -21.82977 -21.21355 -20.49907 -19.13660 -18.42332 -17.94329 -17.32795 -17.06636 -16.79096 -16.60993 -16.32574 -15.76308 -15.60856 -15.50001 -15.15331 -14.91597 -14.83703 -14.37312 -14.14377 -13.89754 -13.60217 -13.45011 -13.17503 -13.01133 -12.87032 -12.72076 -12.37676 -12.19704 -12.07254 -11.93048 -11.82613 -11.76089 -11.62722 -11.50660 -10.81472 -10.71159 -9.98554 -9.66503 -9.39724 -8.93676 -7.82874 -5.23526 -0.60294 0.17156 0.77018 1.20096 1.45424 1.48723 1.56321 1.60247 1.96206 2.49771 3.22653 3.28314 3.32824 3.46885 3.83229 3.91829 3.93317 4.00883 4.02568 4.17556 4.28850 4.38256 4.50206 4.52282 4.59576 4.67927 4.72323 4.85117 4.89238 4.97113 5.04996 5.10442 5.21340 5.25300 5.35291 5.45087 5.50522 5.57909 5.69908 6.16894 6.30919 6.97222 7.02758 7.73360 8.43567 9.25886 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.024843 B = 0.003621 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.788854 B = 7731.449243 C = 8196.968394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.235 4.235 8 H 0.090 0.910 9 N -0.610 5.610 10 C 0.175 3.825 11 C -0.112 4.112 12 C 0.132 3.868 13 H 0.091 0.909 14 C 0.153 3.847 15 H -0.006 1.006 16 C -0.110 4.110 17 C -0.119 4.119 18 C 0.093 3.907 19 N -0.591 5.591 20 C 0.584 3.416 21 O -0.565 6.565 22 C -0.349 4.349 23 S 0.333 5.667 24 C -0.194 4.194 25 C -0.185 4.185 26 C 0.125 3.875 27 F -0.138 7.138 28 H 0.247 0.753 29 H 0.045 0.955 30 H -0.010 1.010 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.121 0.879 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.582 -26.330 4.266 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.218 1.218 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.364 4.364 8 H 0.108 0.892 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.150 4.150 12 C 0.027 3.973 13 H 0.109 0.891 14 C 0.045 3.955 15 H 0.011 0.989 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.028 4.028 19 N -0.323 5.323 20 C 0.372 3.628 21 O -0.445 6.445 22 C -0.470 4.470 23 S 0.600 5.400 24 C -0.332 4.332 25 C -0.215 4.215 26 C 0.090 3.910 27 F -0.116 7.116 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.008 0.992 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.241 0.759 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.174 -25.888 5.570 28.025 hybrid contribution -0.647 1.731 -2.529 3.133 sum 8.527 -24.157 3.041 25.797 Atomic orbital electron populations 1.70159 1.06585 1.25346 1.57961 1.25700 0.96478 1.01218 1.02659 0.85081 0.77794 0.78917 0.77475 1.21769 1.22218 1.18617 1.19405 0.91672 0.83352 1.41961 0.89197 1.44357 1.04970 1.00984 1.83091 1.21562 0.85119 0.91159 0.97217 1.22631 0.97499 0.94962 0.99947 1.22105 0.96261 0.79941 0.98972 0.89096 1.20958 0.94083 0.84846 0.95651 0.98871 1.21412 0.96482 0.97244 0.99729 1.21882 0.98437 0.92311 1.03088 1.22397 0.81907 0.99464 0.99051 1.47984 1.24640 1.11055 1.48590 1.17225 0.83576 0.83850 0.78147 1.90840 1.23690 1.76847 1.53145 1.24560 1.20386 1.01976 1.00082 1.82899 1.53365 0.98831 1.04936 1.25738 1.04236 1.07125 0.96094 1.19939 1.06139 0.93326 1.02140 1.17505 1.00104 0.92603 0.80748 1.91491 1.88741 1.82449 1.48961 0.94418 0.93692 0.99163 0.92134 0.91482 0.91111 0.92157 0.86119 0.92405 0.88061 0.87683 0.75851 0.80514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.26 10.56 21.65 0.23 -59.03 16 2 C -0.07 -3.93 5.46 84.86 0.46 -3.47 16 3 Si 0.98 46.44 29.56 68.60 2.03 48.47 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.24 -13.33 9.91 84.03 0.83 -12.49 16 8 H 0.09 4.76 7.36 -2.91 -0.02 4.74 16 9 N -0.61 -32.84 3.35 -670.51 -2.25 -35.09 16 10 C 0.17 9.63 5.59 86.87 0.49 10.12 16 11 C -0.11 -5.23 4.95 31.59 0.16 -5.07 16 12 C 0.13 5.22 3.32 46.14 0.15 5.38 16 13 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 14 C 0.15 6.58 2.57 45.50 0.12 6.70 16 15 H -0.01 -0.29 8.06 -2.39 -0.02 -0.31 16 16 C -0.11 -3.58 5.46 30.26 0.17 -3.41 16 17 C -0.12 -2.60 5.93 30.80 0.18 -2.41 16 18 C 0.09 1.93 5.93 86.03 0.51 2.44 16 19 N -0.59 -18.87 2.91 -796.23 -2.32 -21.19 16 20 C 0.58 20.43 7.40 86.34 0.64 21.06 16 21 O -0.56 -25.02 14.05 -4.49 -0.06 -25.08 16 22 C -0.35 -8.99 5.40 24.06 0.13 -8.86 16 23 S 0.33 4.11 20.29 -56.49 -1.15 2.96 16 24 C -0.19 -1.65 10.91 66.80 0.73 -0.92 16 25 C -0.19 -2.76 10.15 21.12 0.21 -2.55 16 26 C 0.13 3.20 7.50 21.84 0.16 3.37 16 27 F -0.14 -4.54 17.23 44.97 0.77 -3.76 16 28 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 29 H 0.04 2.70 6.77 -2.38 -0.02 2.68 16 30 H -0.01 -0.61 8.11 -2.39 -0.02 -0.63 16 31 H 0.06 3.04 6.33 -2.39 -0.02 3.03 16 32 H 0.07 3.03 8.14 -2.39 -0.02 3.02 16 33 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 34 H 0.06 2.05 7.72 -2.39 -0.02 2.03 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.11 1.63 4.48 -10.45 -0.05 1.59 16 39 H 0.22 -0.11 8.06 -2.91 -0.02 -0.14 16 40 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -81.06 331.82 3.23 -77.83 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.03 Total: 5.01 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 4.94 Total: 9.88 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -4.34 Total: -115.30 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.06 Total: -25.08 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.77 Total: -3.76 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.15 Total: 2.96 kcal Total: -81.06 3.23 -77.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049447759.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.299 kcal (2) G-P(sol) polarization free energy of solvation -81.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds