Wall clock time and date at job start Tue Mar 31 2020 13:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00293 * 2 1 4 4 H 1.48502 * 109.46975 * 85.82963 * 3 2 1 5 5 H 1.48494 * 109.47260 * 325.83150 * 3 2 1 6 6 H 1.48504 * 109.47279 * 205.82703 * 3 2 1 7 7 C 1.38820 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99572 * 165.22207 * 7 2 1 9 9 N 1.36931 * 119.99873 * 345.21723 * 7 2 1 10 10 C 1.46886 * 125.58572 * 352.34354 * 9 7 2 11 11 C 1.54049 * 107.70878 * 182.95892 * 10 9 7 12 12 C 1.54064 * 103.74637 * 17.13344 * 11 10 9 13 13 H 1.09007 * 109.15811 * 86.46242 * 12 11 10 14 14 C 1.47657 * 125.58029 * 172.03283 * 9 7 2 15 15 H 1.09004 * 110.56571 * 38.36682 * 14 9 7 16 16 C 1.52925 * 107.99950 * 276.41685 * 14 9 7 17 17 C 1.52933 * 109.80141 * 188.16394 * 16 14 9 18 18 C 1.53051 * 108.49103 * 65.98869 * 17 16 14 19 19 N 1.44189 * 111.77034 * 206.74114 * 12 11 10 20 20 C 1.34777 * 117.75725 * 266.44942 * 19 12 11 21 21 O 1.21739 * 119.99645 * 174.09237 * 20 19 12 22 22 C 1.46288 * 120.00446 * 354.08922 * 20 19 12 23 23 S 1.75819 * 125.46364 * 45.08022 * 22 20 19 24 24 C 1.70597 * 91.61053 * 179.97438 * 23 22 20 25 25 C 1.33738 * 111.03713 * 0.32553 * 24 23 22 26 26 C 1.36925 * 125.46677 * 225.39173 * 22 20 19 27 27 F 1.35105 * 123.40401 * 359.93888 * 26 22 20 28 28 H 0.97004 * 119.99936 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.80891 * 302.51110 * 10 9 7 30 30 H 1.08999 * 109.81055 * 63.33970 * 10 9 7 31 31 H 1.09007 * 110.57135 * 135.70010 * 11 10 9 32 32 H 1.08997 * 110.57182 * 258.56994 * 11 10 9 33 33 H 1.08997 * 109.41028 * 308.26786 * 16 14 9 34 34 H 1.09002 * 109.41328 * 68.06079 * 16 14 9 35 35 H 1.08997 * 109.63538 * 185.69381 * 17 16 14 36 36 H 1.08998 * 109.63211 * 306.08949 * 17 16 14 37 37 H 1.09002 * 109.45941 * 66.21889 * 18 17 16 38 38 H 1.09002 * 109.46143 * 186.18187 * 18 17 16 39 39 H 1.07998 * 124.48576 * 180.02562 * 24 23 22 40 40 H 1.08000 * 122.45638 * 179.72513 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4096 2.0972 1.3964 5 1 1.4946 2.6256 -0.7863 6 1 3.5892 1.4162 -0.6100 7 6 2.0102 -1.2023 -0.0005 8 1 3.0634 -1.2176 -0.2391 9 7 1.3595 -2.3686 0.3015 10 6 -0.0199 -2.4746 0.7953 11 6 -0.3064 -3.9633 1.0691 12 6 1.0947 -4.6016 1.1245 13 1 1.4875 -4.5149 2.1376 14 6 1.9273 -3.7260 0.1781 15 1 2.9756 -3.7312 0.4766 16 6 1.7618 -4.1773 -1.2737 17 6 2.1495 -5.6507 -1.4056 18 6 1.1413 -6.4904 -0.6175 19 7 1.0619 -5.9960 0.7591 20 6 0.9415 -6.9018 1.7498 21 8 0.8014 -8.0812 1.4825 22 6 0.9792 -6.4679 3.1464 23 16 0.1183 -5.0853 3.8085 24 6 0.7430 -5.3822 5.3680 25 6 1.5487 -6.4497 5.3672 26 6 1.6954 -7.0697 4.1462 27 9 2.4680 -8.1613 3.9544 28 1 -0.4850 0.8401 0.0004 29 1 -0.1275 -1.9021 1.7165 30 1 -0.7117 -2.0966 0.0426 31 1 -0.8208 -4.0853 2.0224 32 1 -0.8925 -4.3959 0.2584 33 1 0.7230 -4.0472 -1.5772 34 1 2.4041 -3.5746 -1.9158 35 1 2.1278 -5.9426 -2.4555 36 1 3.1511 -5.8033 -1.0037 37 1 0.1611 -6.4177 -1.0888 38 1 1.4637 -7.5316 -0.6091 39 1 0.5214 -4.7842 6.2396 40 1 2.0476 -6.7999 6.2587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049447764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:12 Heat of formation + Delta-G solvation = -7.111314 kcal Electronic energy + Delta-G solvation = -26338.859989 eV Core-core repulsion = 22581.897930 eV Total energy + Delta-G solvation = -3756.962059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.89399 -40.50199 -38.28087 -37.21821 -35.10491 -33.28534 -32.17152 -29.98812 -29.12460 -28.36807 -25.43226 -24.61173 -24.14985 -22.15765 -21.41420 -20.20783 -19.80801 -18.97164 -17.86741 -17.11743 -16.85112 -16.41135 -15.72198 -15.44019 -15.00281 -14.79355 -14.63525 -14.42187 -14.09283 -13.80890 -13.61179 -13.33362 -13.12563 -12.74744 -12.60176 -12.22300 -11.99348 -11.87630 -11.77310 -11.15510 -11.01618 -10.88310 -10.80864 -10.77619 -10.49099 -10.23595 -10.14033 -10.02547 -9.73825 -9.64404 -8.96823 -8.70676 -8.52002 -8.36288 -6.94955 -5.81217 -3.16955 0.38577 1.20153 1.71961 2.13581 2.84060 3.14737 3.34828 3.41460 3.42724 4.20377 4.37434 4.51855 4.84563 4.95527 5.12761 5.16488 5.21811 5.23369 5.40191 5.41931 5.50350 5.53033 5.61761 5.71987 5.80442 5.98359 6.07186 6.09615 6.11794 6.19036 6.26128 6.33039 6.45692 6.68891 6.79490 6.97017 7.27286 7.42342 7.55953 7.69452 8.12670 8.17115 9.08733 9.70621 10.34915 11.28011 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015456 B = 0.004761 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.160801 B = 5879.233589 C = 6915.267340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.172 3.828 11 C -0.152 4.152 12 C 0.113 3.887 13 H 0.089 0.911 14 C 0.164 3.836 15 H 0.058 0.942 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.119 3.881 19 N -0.580 5.580 20 C 0.587 3.413 21 O -0.531 6.531 22 C -0.317 4.317 23 S 0.306 5.694 24 C -0.238 4.238 25 C -0.179 4.179 26 C 0.148 3.852 27 F -0.114 7.114 28 H 0.253 0.747 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.177 0.823 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.271 -10.616 7.054 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.192 4.192 12 C 0.007 3.993 13 H 0.107 0.893 14 C 0.055 3.945 15 H 0.076 0.924 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.003 4.003 19 N -0.310 5.310 20 C 0.373 3.627 21 O -0.409 6.409 22 C -0.438 4.438 23 S 0.574 5.426 24 C -0.376 4.376 25 C -0.211 4.211 26 C 0.113 3.887 27 F -0.093 7.093 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.194 0.806 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.804 -9.903 6.275 11.751 hybrid contribution 1.512 -0.226 0.785 1.719 sum 0.708 -10.128 7.059 12.366 Atomic orbital electron populations 1.69967 1.05004 1.25295 1.55651 1.24759 0.95510 0.97734 1.01999 0.86169 0.78852 0.83611 0.77553 1.21601 1.21839 1.20561 1.18984 0.92557 0.82910 1.41445 0.90348 1.44508 1.11157 0.99449 1.76448 1.21103 0.87466 0.87894 0.98877 1.23201 0.95564 1.00164 1.00257 1.21700 0.98029 0.79408 1.00150 0.89295 1.20932 0.95719 0.85891 0.91926 0.92385 1.22106 1.02185 0.93306 0.99424 1.21863 0.98751 0.96803 0.99663 1.21505 0.99865 0.98804 0.80112 1.47165 1.71105 1.06223 1.06553 1.16865 0.77019 0.85574 0.83200 1.90819 1.49714 1.16756 1.83609 1.24613 1.13415 1.06733 0.99069 1.84130 1.42767 1.20432 0.95279 1.25528 1.03921 1.02171 1.05934 1.19715 1.04801 0.98694 0.97840 1.16769 0.93440 0.86106 0.92385 1.91532 1.71923 1.50198 1.95620 0.93656 0.94906 0.91548 0.92167 0.91268 0.91752 0.91553 0.90861 0.91709 0.91682 0.89473 0.80587 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.13 10.73 55.49 0.60 -24.53 16 2 C 0.00 -0.07 5.38 -17.43 -0.09 -0.17 16 3 Si 0.91 20.99 29.58 -169.99 -5.03 15.96 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.23 -5.94 10.22 -15.06 -0.15 -6.09 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 9 N -0.59 -13.60 2.93 -163.61 -0.48 -14.08 16 10 C 0.17 3.74 5.49 -3.28 -0.02 3.72 16 11 C -0.15 -2.59 6.02 -25.63 -0.15 -2.75 16 12 C 0.11 1.89 2.29 -68.36 -0.16 1.74 16 13 H 0.09 1.48 4.83 -39.35 -0.19 1.29 16 14 C 0.16 3.10 3.29 -67.09 -0.22 2.88 16 15 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.13 -2.24 5.31 -26.80 -0.14 -2.38 16 17 C -0.13 -1.83 6.10 -26.74 -0.16 -2.00 16 18 C 0.12 1.73 6.24 -4.02 -0.03 1.70 16 19 N -0.58 -9.34 2.82 -168.51 -0.47 -9.81 16 20 C 0.59 10.06 7.35 -13.02 -0.10 9.97 16 21 O -0.53 -10.39 16.36 5.15 0.08 -10.30 16 22 C -0.32 -4.81 5.24 -36.82 -0.19 -5.01 16 23 S 0.31 3.79 17.20 -107.50 -1.85 1.94 16 24 C -0.24 -2.43 10.91 29.15 0.32 -2.11 16 25 C -0.18 -2.01 10.15 -41.35 -0.42 -2.43 16 26 C 0.15 2.12 7.48 -40.25 -0.30 1.82 16 27 F -0.11 -1.80 17.20 2.25 0.04 -1.76 16 28 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 30 H 0.07 1.65 6.92 -51.93 -0.36 1.29 16 31 H 0.06 0.91 5.32 -40.98 -0.22 0.69 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.19 8.01 -51.93 -0.42 0.77 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.27 7.07 -51.93 -0.37 0.90 16 39 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -29.86 330.98 -8.84 -38.70 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.90 Total: -0.01 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.82 Total: -1.09 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.36 Total: -48.42 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.85 Total: 1.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.86 -8.84 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049447764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.590 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds