Wall clock time and date at job start Tue Mar 31 2020 13:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00293 * 2 1 4 4 H 1.48502 * 109.46975 * 85.82963 * 3 2 1 5 5 H 1.48494 * 109.47260 * 325.83150 * 3 2 1 6 6 H 1.48504 * 109.47279 * 205.82703 * 3 2 1 7 7 C 1.38820 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99572 * 165.22207 * 7 2 1 9 9 N 1.36931 * 119.99873 * 345.21723 * 7 2 1 10 10 C 1.46886 * 125.58572 * 352.34354 * 9 7 2 11 11 C 1.54049 * 107.70878 * 182.95892 * 10 9 7 12 12 C 1.54064 * 103.74637 * 17.13344 * 11 10 9 13 13 H 1.09007 * 109.15811 * 86.46242 * 12 11 10 14 14 C 1.47657 * 125.58029 * 172.03283 * 9 7 2 15 15 H 1.09004 * 110.56571 * 38.36682 * 14 9 7 16 16 C 1.52925 * 107.99950 * 276.41685 * 14 9 7 17 17 C 1.52933 * 109.80141 * 188.16394 * 16 14 9 18 18 C 1.53051 * 108.49103 * 65.98869 * 17 16 14 19 19 N 1.44189 * 111.77034 * 206.74114 * 12 11 10 20 20 C 1.34777 * 117.75725 * 266.44942 * 19 12 11 21 21 O 1.21739 * 119.99645 * 174.09237 * 20 19 12 22 22 C 1.46288 * 120.00446 * 354.08922 * 20 19 12 23 23 S 1.75819 * 125.46364 * 45.08022 * 22 20 19 24 24 C 1.70597 * 91.61053 * 179.97438 * 23 22 20 25 25 C 1.33738 * 111.03713 * 0.32553 * 24 23 22 26 26 C 1.36925 * 125.46677 * 225.39173 * 22 20 19 27 27 F 1.35105 * 123.40401 * 359.93888 * 26 22 20 28 28 H 0.97004 * 119.99936 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.80891 * 302.51110 * 10 9 7 30 30 H 1.08999 * 109.81055 * 63.33970 * 10 9 7 31 31 H 1.09007 * 110.57135 * 135.70010 * 11 10 9 32 32 H 1.08997 * 110.57182 * 258.56994 * 11 10 9 33 33 H 1.08997 * 109.41028 * 308.26786 * 16 14 9 34 34 H 1.09002 * 109.41328 * 68.06079 * 16 14 9 35 35 H 1.08997 * 109.63538 * 185.69381 * 17 16 14 36 36 H 1.08998 * 109.63211 * 306.08949 * 17 16 14 37 37 H 1.09002 * 109.45941 * 66.21889 * 18 17 16 38 38 H 1.09002 * 109.46143 * 186.18187 * 18 17 16 39 39 H 1.07998 * 124.48576 * 180.02562 * 24 23 22 40 40 H 1.08000 * 122.45638 * 179.72513 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4096 2.0972 1.3964 5 1 1.4946 2.6256 -0.7863 6 1 3.5892 1.4162 -0.6100 7 6 2.0102 -1.2023 -0.0005 8 1 3.0634 -1.2176 -0.2391 9 7 1.3595 -2.3686 0.3015 10 6 -0.0199 -2.4746 0.7953 11 6 -0.3064 -3.9633 1.0691 12 6 1.0947 -4.6016 1.1245 13 1 1.4875 -4.5149 2.1376 14 6 1.9273 -3.7260 0.1781 15 1 2.9756 -3.7312 0.4766 16 6 1.7618 -4.1773 -1.2737 17 6 2.1495 -5.6507 -1.4056 18 6 1.1413 -6.4904 -0.6175 19 7 1.0619 -5.9960 0.7591 20 6 0.9415 -6.9018 1.7498 21 8 0.8014 -8.0812 1.4825 22 6 0.9792 -6.4679 3.1464 23 16 0.1183 -5.0853 3.8085 24 6 0.7430 -5.3822 5.3680 25 6 1.5487 -6.4497 5.3672 26 6 1.6954 -7.0697 4.1462 27 9 2.4680 -8.1613 3.9544 28 1 -0.4850 0.8401 0.0004 29 1 -0.1275 -1.9021 1.7165 30 1 -0.7117 -2.0966 0.0426 31 1 -0.8208 -4.0853 2.0224 32 1 -0.8925 -4.3959 0.2584 33 1 0.7230 -4.0472 -1.5772 34 1 2.4041 -3.5746 -1.9158 35 1 2.1278 -5.9426 -2.4555 36 1 3.1511 -5.8033 -1.0037 37 1 0.1611 -6.4177 -1.0888 38 1 1.4637 -7.5316 -0.6091 39 1 0.5214 -4.7842 6.2396 40 1 2.0476 -6.7999 6.2587 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049447764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:11 Heat of formation + Delta-G solvation = -23.842904 kcal Electronic energy + Delta-G solvation = -26339.585526 eV Core-core repulsion = 22581.897930 eV Total energy + Delta-G solvation = -3757.687596 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.03820 -41.85693 -39.69066 -38.25711 -36.64678 -34.62719 -33.98698 -31.14236 -30.79944 -29.81279 -26.63001 -26.40661 -25.35164 -23.45466 -22.75945 -21.88057 -20.90118 -20.16691 -19.23717 -18.75414 -18.01759 -17.74533 -16.88039 -16.80163 -16.58333 -16.24877 -16.08029 -15.63994 -15.27429 -15.03642 -14.98034 -14.69984 -14.49475 -14.14179 -13.95208 -13.77860 -13.37621 -13.24815 -12.90025 -12.75666 -12.73725 -12.43229 -12.38254 -12.09708 -11.99343 -11.73232 -11.63902 -11.55670 -11.42696 -11.05956 -10.66270 -10.03010 -9.77128 -9.43234 -8.85328 -7.80646 -5.17301 -0.63132 0.17097 0.78409 1.16939 1.50410 1.52001 1.59408 1.61134 1.88001 2.52824 3.22631 3.23507 3.33775 3.58645 3.69774 3.77774 3.91640 3.95651 4.03793 4.10681 4.29792 4.36541 4.48910 4.55067 4.61645 4.66571 4.72822 4.79125 4.85550 4.92827 4.99976 5.08878 5.22443 5.28945 5.41497 5.49776 5.52018 5.65386 5.78642 6.10119 6.24223 6.85767 7.12086 7.78916 8.42987 9.26993 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015456 B = 0.004761 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.160801 B = 5879.233589 C = 6915.267340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.270 1.270 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.607 5.607 10 C 0.182 3.818 11 C -0.137 4.137 12 C 0.128 3.872 13 H 0.095 0.905 14 C 0.157 3.843 15 H 0.057 0.943 16 C -0.122 4.122 17 C -0.118 4.118 18 C 0.115 3.885 19 N -0.578 5.578 20 C 0.586 3.414 21 O -0.562 6.562 22 C -0.353 4.353 23 S 0.302 5.698 24 C -0.209 4.209 25 C -0.182 4.182 26 C 0.140 3.860 27 F -0.127 7.127 28 H 0.247 0.753 29 H 0.011 0.989 30 H 0.031 0.969 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.216 0.784 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.975 -11.146 8.477 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.226 1.226 6 H -0.195 1.195 7 C -0.364 4.364 8 H 0.098 0.902 9 N -0.332 5.332 10 C 0.057 3.943 11 C -0.177 4.177 12 C 0.022 3.978 13 H 0.113 0.887 14 C 0.050 3.950 15 H 0.075 0.925 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.006 4.006 19 N -0.309 5.309 20 C 0.374 3.626 21 O -0.443 6.443 22 C -0.474 4.474 23 S 0.569 5.431 24 C -0.346 4.346 25 C -0.212 4.212 26 C 0.104 3.896 27 F -0.106 7.106 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.232 0.768 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.075 -10.455 7.687 12.977 hybrid contribution 1.316 -0.088 0.395 1.376 sum 1.240 -10.543 8.082 13.342 Atomic orbital electron populations 1.70147 1.06178 1.25340 1.57249 1.25452 0.96231 1.00490 1.02722 0.85238 0.77995 0.79969 0.77207 1.21557 1.22585 1.19508 1.19277 0.92817 0.84094 1.40190 0.90223 1.44694 1.11684 1.00437 1.76360 1.20825 0.86405 0.90503 0.96575 1.23034 0.96182 0.96772 1.01727 1.21450 0.97078 0.79470 0.99841 0.88696 1.21111 0.95771 0.84556 0.93552 0.92548 1.21929 1.01029 0.95539 0.97675 1.21781 0.98593 0.93939 1.01345 1.21643 1.00512 0.98987 0.79491 1.47189 1.70805 1.05667 1.07191 1.17132 0.76186 0.85142 0.84101 1.90790 1.51279 1.17916 1.84305 1.24567 1.15623 1.08784 0.98410 1.84023 1.42645 1.19327 0.97057 1.25917 1.01724 1.01425 1.05563 1.19960 1.05136 0.98620 0.97529 1.17260 0.93070 0.85746 0.93519 1.91494 1.72297 1.50974 1.95815 0.94338 0.97073 0.95096 0.89847 0.90962 0.93227 0.92745 0.88146 0.91249 0.90947 0.89163 0.76764 0.80055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.15 10.73 21.65 0.23 -52.91 16 2 C -0.05 -2.92 5.38 84.86 0.46 -2.46 16 3 Si 0.97 43.45 29.58 68.60 2.03 45.48 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.23 -12.18 10.22 84.04 0.86 -11.32 16 8 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 9 N -0.61 -28.25 2.93 -671.54 -1.97 -30.22 16 10 C 0.18 8.12 5.49 86.66 0.48 8.59 16 11 C -0.14 -4.64 6.02 31.31 0.19 -4.45 16 12 C 0.13 4.18 2.29 45.94 0.11 4.29 16 13 H 0.10 3.05 4.83 -10.38 -0.05 3.00 16 14 C 0.16 5.91 3.29 44.90 0.15 6.06 16 15 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 16 C -0.12 -4.13 5.31 30.55 0.16 -3.97 16 17 C -0.12 -3.08 6.10 30.59 0.19 -2.89 16 18 C 0.11 3.18 6.24 86.40 0.54 3.72 16 19 N -0.58 -18.09 2.82 -805.23 -2.27 -20.36 16 20 C 0.59 19.68 7.35 86.34 0.63 20.32 16 21 O -0.56 -21.86 16.36 -4.47 -0.07 -21.93 16 22 C -0.35 -10.28 5.24 24.06 0.13 -10.15 16 23 S 0.30 6.83 17.20 -56.49 -0.97 5.86 16 24 C -0.21 -3.46 10.91 66.80 0.73 -2.73 16 25 C -0.18 -3.49 10.15 21.12 0.21 -3.28 16 26 C 0.14 3.79 7.48 21.84 0.16 3.96 16 27 F -0.13 -3.90 17.20 44.97 0.77 -3.12 16 28 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.01 0.53 8.06 -2.39 -0.02 0.51 16 30 H 0.03 1.60 6.92 -2.39 -0.02 1.58 16 31 H 0.08 2.44 5.32 -9.34 -0.05 2.39 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.05 1.82 8.01 -2.39 -0.02 1.81 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.51 7.07 -2.39 -0.02 2.49 16 39 H 0.22 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -66.08 330.98 3.73 -62.35 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.99 Total: 9.17 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.99 Total: 5.68 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -4.01 Total: -103.49 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.07 Total: -21.93 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.77 Total: -3.12 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 6.83 SS G_CDS: -0.97 Total: 5.86 kcal Total: -66.08 3.73 -62.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049447764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.509 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds