Wall clock time and date at job start Tue Mar 31 2020 13:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99431 * 2 1 4 4 H 1.48499 * 109.47168 * 267.66554 * 3 2 1 5 5 H 1.48497 * 109.47467 * 27.66495 * 3 2 1 6 6 H 1.48508 * 109.46914 * 147.66690 * 3 2 1 7 7 C 1.38809 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00325 * 338.00842 * 7 2 1 9 9 N 1.36936 * 119.99614 * 158.00918 * 7 2 1 10 10 C 1.46895 * 120.46145 * 149.70312 * 9 7 2 11 11 C 1.53365 * 108.74148 * 124.38873 * 10 9 7 12 12 C 1.52551 * 109.12347 * 52.25944 * 11 10 9 13 13 C 1.52960 * 114.06096 * 75.54381 * 12 11 10 14 14 N 1.47163 * 87.85318 * 139.43719 * 13 12 11 15 15 C 1.34782 * 136.00086 * 153.33707 * 14 13 12 16 16 O 1.21738 * 119.99961 * 0.02562 * 15 14 13 17 17 C 1.46282 * 119.99980 * 180.02562 * 15 14 13 18 18 S 1.75824 * 125.46931 * 0.02562 * 17 15 14 19 19 C 1.70588 * 91.61029 * 179.97438 * 18 17 15 20 20 C 1.33731 * 111.04214 * 359.97438 * 19 18 17 21 21 C 1.36932 * 125.46646 * 180.02562 * 17 15 14 22 22 F 1.35100 * 123.40043 * 359.97438 * 21 17 15 23 23 C 1.47166 * 88.00096 * 333.59127 * 14 13 12 24 24 C 1.52554 * 113.43690 * 302.66975 * 12 11 10 25 25 C 1.46882 * 120.46882 * 329.72998 * 9 7 2 26 26 H 0.97001 * 120.00789 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58984 * 4.61745 * 10 9 7 28 28 H 1.08998 * 109.59621 * 244.16506 * 10 9 7 29 29 H 1.09009 * 109.52569 * 292.36821 * 11 10 9 30 30 H 1.08997 * 109.58873 * 172.19313 * 11 10 9 31 31 H 1.09000 * 113.48772 * 24.69333 * 13 12 11 32 32 H 1.09000 * 113.54514 * 254.18932 * 13 12 11 33 33 H 1.08006 * 124.47976 * 179.97438 * 19 18 17 34 34 H 1.08002 * 122.45411 * 180.26711 * 20 19 18 35 35 H 1.08998 * 113.49109 * 141.15550 * 23 14 13 36 36 H 1.08997 * 113.49125 * 271.66646 * 23 14 13 37 37 H 1.08999 * 109.52518 * 177.21723 * 24 12 11 38 38 H 1.08997 * 109.52466 * 297.42572 * 24 12 11 39 39 H 1.09009 * 109.58803 * 355.38177 * 25 9 7 40 40 H 1.09001 * 109.59651 * 115.82050 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.5469 2.0180 -1.3989 5 1 1.4236 2.6665 0.6500 6 1 3.5221 1.4551 0.7489 7 6 2.0103 -1.2021 0.0005 8 1 1.5293 -2.1032 0.3512 9 7 3.3049 -1.2453 -0.4435 10 6 4.2507 -2.2222 0.1124 11 6 4.8405 -3.0468 -1.0383 12 6 5.3936 -2.1003 -2.0992 13 6 6.7232 -1.4464 -1.7195 14 7 7.1579 -1.6515 -3.1104 15 6 8.0260 -1.0568 -3.9526 16 8 8.6733 -0.0952 -3.5804 17 6 8.1904 -1.5667 -5.3137 18 16 7.3325 -2.9397 -5.9994 19 6 8.1367 -2.7578 -7.4928 20 6 8.9884 -1.7274 -7.4571 21 6 9.0372 -1.0513 -6.2584 22 9 9.8379 0.0141 -6.0374 23 6 6.2241 -2.7868 -3.1805 24 6 4.3541 -1.1257 -2.6441 25 6 3.7675 -0.3151 -1.4819 26 1 -0.4851 0.8400 -0.0004 27 1 3.7290 -2.8825 0.8052 28 1 5.0514 -1.6992 0.6351 29 1 4.0611 -3.6702 -1.4768 30 1 5.6435 -3.6796 -0.6603 31 1 7.2992 -2.0221 -0.9950 32 1 6.6289 -0.3960 -1.4442 33 1 7.9788 -3.3910 -8.3534 34 1 9.5915 -1.4443 -8.3072 35 1 5.7081 -2.8665 -4.1373 36 1 6.6629 -3.7308 -2.8574 37 1 4.8265 -0.4505 -3.3575 38 1 3.5578 -1.6816 -3.1391 39 1 2.9276 0.2808 -1.8392 40 1 4.5346 0.3406 -1.0699 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050509366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:50 Heat of formation + Delta-G solvation = 25.054793 kcal Electronic energy + Delta-G solvation = -25452.823112 eV Core-core repulsion = 21697.255879 eV Total energy + Delta-G solvation = -3755.567232 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.06328 -41.00570 -38.71853 -37.42886 -36.20262 -32.62955 -31.10848 -30.57651 -30.04855 -27.47177 -26.37713 -24.97936 -23.94731 -22.98113 -21.52323 -20.73546 -19.80334 -18.36202 -18.22856 -17.08197 -16.73704 -16.36538 -16.17719 -15.70063 -15.29238 -15.16088 -14.72652 -14.30256 -14.21109 -14.00089 -13.82486 -13.59913 -13.23797 -12.98459 -12.76995 -12.49031 -12.23303 -12.18405 -11.88910 -11.79241 -11.71432 -11.35139 -10.78666 -10.63450 -10.47171 -10.30022 -10.04363 -9.87190 -9.69614 -9.50659 -9.36449 -8.90075 -8.71060 -8.57773 -6.96461 -5.98726 -3.35320 0.02294 0.96429 1.39750 1.82207 2.62571 2.98031 3.32710 3.49307 3.52862 3.92140 4.17299 4.33827 4.52271 4.53976 4.81205 4.87482 4.91400 5.07400 5.18207 5.23994 5.31785 5.33338 5.37899 5.40627 5.67322 5.73502 5.80624 5.87502 5.92011 5.99384 6.12327 6.24458 6.29982 6.40065 6.58963 6.63857 6.67793 6.87957 7.58594 7.96878 7.98716 8.31621 8.92960 9.70036 10.08595 11.17207 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.003439 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.909943 B = 8139.694386 C = 8465.449014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.029 3.971 3 Si 0.877 3.123 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.263 4.263 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.074 4.074 13 C 0.116 3.884 14 N -0.640 5.640 15 C 0.616 3.384 16 O -0.525 6.525 17 C -0.307 4.307 18 S 0.269 5.731 19 C -0.221 4.221 20 C -0.179 4.179 21 C 0.159 3.841 22 F -0.104 7.104 23 C 0.094 3.906 24 C -0.108 4.108 25 C 0.130 3.870 26 H 0.263 0.737 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.179 0.821 34 H 0.157 0.843 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.119 -10.280 -14.129 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.707 3.293 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.391 4.391 8 H 0.102 0.898 9 N -0.328 5.328 10 C 0.022 3.978 11 C -0.157 4.157 12 C -0.075 4.075 13 C -0.006 4.006 14 N -0.375 5.375 15 C 0.406 3.594 16 O -0.403 6.403 17 C -0.429 4.429 18 S 0.535 5.465 19 C -0.359 4.359 20 C -0.210 4.210 21 C 0.124 3.876 22 F -0.083 7.083 23 C -0.029 4.029 24 C -0.148 4.148 25 C 0.004 3.996 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.196 0.804 34 H 0.175 0.825 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 15.398 -10.534 -13.505 23.032 hybrid contribution 1.795 2.161 -0.825 2.928 sum 17.193 -8.373 -14.330 23.897 Atomic orbital electron populations 1.69848 1.05819 1.26680 1.52390 1.25332 0.95146 0.97553 0.99068 0.87057 0.80002 0.84784 0.77484 1.21345 1.22997 1.19735 1.18879 0.85779 0.94695 1.39790 0.89815 1.44328 1.08847 1.38720 1.40858 1.20935 0.92315 0.91516 0.93023 1.21891 1.00014 0.97069 0.96712 1.21654 0.93581 0.96788 0.95480 1.23131 0.92365 1.02741 0.82336 1.49420 1.40432 1.32742 1.14873 1.16073 0.78422 0.82670 0.82285 1.90892 1.45838 1.26972 1.76598 1.24598 1.10301 1.07773 1.00211 1.83353 1.37284 1.24600 1.01225 1.25317 1.02161 1.03058 1.05342 1.19825 1.04447 0.98416 0.98359 1.16902 0.91271 0.86714 0.92721 1.91580 1.69999 1.51835 1.94860 1.23344 0.88673 0.90562 1.00334 1.21745 0.96720 0.97443 0.98859 1.21333 0.97661 0.92169 0.88429 0.92717 0.91523 0.95881 0.90930 0.92103 0.89462 0.89992 0.80357 0.82549 0.90390 0.89025 0.92664 0.90788 0.90556 0.95922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.21 13.97 55.49 0.78 -26.44 16 2 C 0.03 0.81 5.17 -17.43 -0.09 0.72 16 3 Si 0.88 22.21 24.56 -169.99 -4.18 18.03 16 4 H -0.29 -7.01 6.44 56.52 0.36 -6.65 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16 6 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -7.07 9.97 -15.06 -0.15 -7.22 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 9 N -0.60 -13.51 2.68 -172.17 -0.46 -13.97 16 10 C 0.15 2.62 6.42 -3.64 -0.02 2.60 16 11 C -0.12 -1.58 5.31 -26.77 -0.14 -1.73 16 12 C -0.07 -1.01 0.83 -155.17 -0.13 -1.14 16 13 C 0.12 1.62 7.56 -8.20 -0.06 1.56 16 14 N -0.64 -8.91 3.46 -187.00 -0.65 -9.55 16 15 C 0.62 9.82 8.02 -13.03 -0.10 9.72 16 16 O -0.52 -10.43 16.91 5.16 0.09 -10.34 16 17 C -0.31 -3.95 6.44 -36.82 -0.24 -4.18 16 18 S 0.27 2.22 19.89 -107.50 -2.14 0.09 16 19 C -0.22 -1.51 10.91 29.15 0.32 -1.19 16 20 C -0.18 -1.54 10.15 -41.35 -0.42 -1.96 16 21 C 0.16 1.98 7.48 -40.25 -0.30 1.68 16 22 F -0.10 -1.54 16.42 2.25 0.04 -1.51 16 23 C 0.09 1.03 6.35 -8.36 -0.05 0.98 16 24 C -0.11 -1.80 5.26 -26.78 -0.14 -1.94 16 25 C 0.13 2.72 4.14 -3.65 -0.02 2.71 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 32 H 0.08 1.31 7.53 -51.93 -0.39 0.92 16 33 H 0.18 0.64 8.06 -52.48 -0.42 0.21 16 34 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.08 0.77 6.37 -51.93 -0.33 0.44 16 36 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.05 0.90 7.95 -51.93 -0.41 0.49 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.79 4.66 -51.92 -0.24 1.55 16 40 H 0.02 0.49 6.93 -51.93 -0.36 0.13 16 LS Contribution 335.09 15.07 5.05 5.05 Total: -1.00 -33.58 335.09 -8.14 -41.72 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -5.12 Total: -3.67 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.55 Total: 0.59 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.33 Total: -49.96 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.18 Total: 18.03 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.14 Total: 0.09 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.58 -8.14 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050509366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.770 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds