Wall clock time and date at job start Tue Mar 31 2020 13:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99431 * 2 1 4 4 H 1.48499 * 109.47168 * 267.66554 * 3 2 1 5 5 H 1.48497 * 109.47467 * 27.66495 * 3 2 1 6 6 H 1.48508 * 109.46914 * 147.66690 * 3 2 1 7 7 C 1.38809 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00325 * 338.00842 * 7 2 1 9 9 N 1.36936 * 119.99614 * 158.00918 * 7 2 1 10 10 C 1.46895 * 120.46145 * 149.70312 * 9 7 2 11 11 C 1.53365 * 108.74148 * 124.38873 * 10 9 7 12 12 C 1.52551 * 109.12347 * 52.25944 * 11 10 9 13 13 C 1.52960 * 114.06096 * 75.54381 * 12 11 10 14 14 N 1.47163 * 87.85318 * 139.43719 * 13 12 11 15 15 C 1.34782 * 136.00086 * 153.33707 * 14 13 12 16 16 O 1.21738 * 119.99961 * 0.02562 * 15 14 13 17 17 C 1.46282 * 119.99980 * 180.02562 * 15 14 13 18 18 S 1.75824 * 125.46931 * 0.02562 * 17 15 14 19 19 C 1.70588 * 91.61029 * 179.97438 * 18 17 15 20 20 C 1.33731 * 111.04214 * 359.97438 * 19 18 17 21 21 C 1.36932 * 125.46646 * 180.02562 * 17 15 14 22 22 F 1.35100 * 123.40043 * 359.97438 * 21 17 15 23 23 C 1.47166 * 88.00096 * 333.59127 * 14 13 12 24 24 C 1.52554 * 113.43690 * 302.66975 * 12 11 10 25 25 C 1.46882 * 120.46882 * 329.72998 * 9 7 2 26 26 H 0.97001 * 120.00789 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.58984 * 4.61745 * 10 9 7 28 28 H 1.08998 * 109.59621 * 244.16506 * 10 9 7 29 29 H 1.09009 * 109.52569 * 292.36821 * 11 10 9 30 30 H 1.08997 * 109.58873 * 172.19313 * 11 10 9 31 31 H 1.09000 * 113.48772 * 24.69333 * 13 12 11 32 32 H 1.09000 * 113.54514 * 254.18932 * 13 12 11 33 33 H 1.08006 * 124.47976 * 179.97438 * 19 18 17 34 34 H 1.08002 * 122.45411 * 180.26711 * 20 19 18 35 35 H 1.08998 * 113.49109 * 141.15550 * 23 14 13 36 36 H 1.08997 * 113.49125 * 271.66646 * 23 14 13 37 37 H 1.08999 * 109.52518 * 177.21723 * 24 12 11 38 38 H 1.08997 * 109.52466 * 297.42572 * 24 12 11 39 39 H 1.09009 * 109.58803 * 355.38177 * 25 9 7 40 40 H 1.09001 * 109.59651 * 115.82050 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.5469 2.0180 -1.3989 5 1 1.4236 2.6665 0.6500 6 1 3.5221 1.4551 0.7489 7 6 2.0103 -1.2021 0.0005 8 1 1.5293 -2.1032 0.3512 9 7 3.3049 -1.2453 -0.4435 10 6 4.2507 -2.2222 0.1124 11 6 4.8405 -3.0468 -1.0383 12 6 5.3936 -2.1003 -2.0992 13 6 6.7232 -1.4464 -1.7195 14 7 7.1579 -1.6515 -3.1104 15 6 8.0260 -1.0568 -3.9526 16 8 8.6733 -0.0952 -3.5804 17 6 8.1904 -1.5667 -5.3137 18 16 7.3325 -2.9397 -5.9994 19 6 8.1367 -2.7578 -7.4928 20 6 8.9884 -1.7274 -7.4571 21 6 9.0372 -1.0513 -6.2584 22 9 9.8379 0.0141 -6.0374 23 6 6.2241 -2.7868 -3.1805 24 6 4.3541 -1.1257 -2.6441 25 6 3.7675 -0.3151 -1.4819 26 1 -0.4851 0.8400 -0.0004 27 1 3.7290 -2.8825 0.8052 28 1 5.0514 -1.6992 0.6351 29 1 4.0611 -3.6702 -1.4768 30 1 5.6435 -3.6796 -0.6603 31 1 7.2992 -2.0221 -0.9950 32 1 6.6289 -0.3960 -1.4442 33 1 7.9788 -3.3910 -8.3534 34 1 9.5915 -1.4443 -8.3072 35 1 5.7081 -2.8665 -4.1373 36 1 6.6629 -3.7308 -2.8574 37 1 4.8265 -0.4505 -3.3575 38 1 3.5578 -1.6816 -3.1391 39 1 2.9276 0.2808 -1.8392 40 1 4.5346 0.3406 -1.0699 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050509366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:49 Heat of formation + Delta-G solvation = 2.412762 kcal Electronic energy + Delta-G solvation = -25453.804944 eV Core-core repulsion = 21697.255879 eV Total energy + Delta-G solvation = -3756.549064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.03647 -42.12808 -39.85195 -38.30073 -37.71453 -34.40848 -32.63928 -32.00894 -31.08209 -28.75250 -27.38433 -26.05651 -25.35202 -24.45409 -22.89042 -21.84511 -20.66591 -19.76505 -19.16232 -18.37675 -18.02315 -17.51985 -17.34187 -17.06457 -16.63738 -16.14348 -15.92339 -15.47808 -15.36125 -15.26523 -15.07685 -14.89818 -14.68858 -14.31207 -13.99834 -13.64962 -13.54234 -13.38914 -13.30063 -12.98865 -12.97051 -12.58051 -12.31018 -12.14688 -12.05483 -11.69097 -11.60947 -11.38776 -11.22790 -10.99491 -10.63304 -10.19744 -9.77966 -9.50552 -8.85351 -8.17834 -5.47627 -0.75770 0.25120 0.74458 1.09802 1.27317 1.38710 1.45951 1.60762 1.91315 2.40381 3.05130 3.16879 3.21210 3.30073 3.41740 3.74556 3.82513 3.92707 4.10808 4.27268 4.35439 4.36194 4.45463 4.46804 4.57670 4.62884 4.69460 4.75080 4.80069 4.86117 4.91094 4.99132 5.03352 5.16458 5.19785 5.24089 5.28776 5.56071 5.92290 6.16641 6.52855 6.87177 6.96238 7.65516 8.07739 9.02305 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020861 B = 0.003439 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.909943 B = 8139.694386 C = 8465.449014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.025 4.025 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.310 1.310 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.060 0.940 9 N -0.617 5.617 10 C 0.138 3.862 11 C -0.102 4.102 12 C -0.075 4.075 13 C 0.110 3.890 14 N -0.642 5.642 15 C 0.608 3.392 16 O -0.585 6.585 17 C -0.353 4.353 18 S 0.327 5.673 19 C -0.193 4.193 20 C -0.191 4.191 21 C 0.138 3.862 22 F -0.130 7.130 23 C 0.108 3.892 24 C -0.098 4.098 25 C 0.127 3.873 26 H 0.260 0.740 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.052 0.948 33 H 0.222 0.778 34 H 0.178 0.822 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.751 -13.494 -16.295 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.220 4.220 3 Si 0.759 3.241 4 H -0.206 1.206 5 H -0.239 1.239 6 H -0.197 1.197 7 C -0.371 4.371 8 H 0.078 0.922 9 N -0.342 5.342 10 C 0.014 3.986 11 C -0.141 4.141 12 C -0.076 4.076 13 C -0.012 4.012 14 N -0.375 5.375 15 C 0.399 3.601 16 O -0.468 6.468 17 C -0.474 4.474 18 S 0.594 5.406 19 C -0.331 4.331 20 C -0.221 4.221 21 C 0.102 3.898 22 F -0.108 7.108 23 C -0.014 4.014 24 C -0.137 4.137 25 C 0.002 3.998 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.070 0.930 33 H 0.239 0.761 34 H 0.196 0.804 35 H 0.112 0.888 36 H 0.150 0.850 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 17.055 -13.801 -15.679 26.966 hybrid contribution 1.276 3.033 -0.171 3.295 sum 18.331 -10.767 -15.850 26.518 Atomic orbital electron populations 1.69949 1.07164 1.27013 1.55637 1.25820 0.95579 1.00146 1.00468 0.86194 0.78565 0.81716 0.77617 1.20607 1.23886 1.19655 1.18894 0.87508 0.93469 1.37249 0.92188 1.44482 1.08210 1.39810 1.41655 1.21203 0.91568 0.90940 0.94914 1.21761 1.01215 0.96462 0.94662 1.21508 0.92575 0.96611 0.96883 1.23256 0.93064 1.01561 0.83322 1.49494 1.40057 1.33366 1.14583 1.16564 0.77906 0.82052 0.83539 1.90841 1.48312 1.29612 1.78016 1.24570 1.12773 1.10851 0.99221 1.82992 1.35509 1.21138 1.00935 1.25861 0.99569 1.01837 1.05840 1.19980 1.05760 0.98805 0.97585 1.17559 0.91282 0.86595 0.94410 1.91504 1.70846 1.53284 1.95191 1.23483 0.87068 0.90756 1.00095 1.21555 0.97599 0.97654 0.96939 1.21260 0.96464 0.92433 0.89674 0.93040 0.91846 0.95118 0.90636 0.87701 0.86793 0.92969 0.76105 0.80420 0.88847 0.84997 0.92653 0.90574 0.93594 0.96500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.05 13.97 21.65 0.30 -58.75 16 2 C -0.02 -1.43 5.17 84.86 0.44 -0.99 16 3 Si 0.93 47.34 24.56 68.60 1.69 49.02 16 4 H -0.28 -13.71 6.44 99.48 0.64 -13.06 16 5 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 6 H -0.27 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.24 -13.15 9.97 84.03 0.84 -12.31 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.62 -27.32 2.68 -698.63 -1.87 -29.20 16 10 C 0.14 4.61 6.42 86.43 0.56 5.17 16 11 C -0.10 -2.34 5.31 30.57 0.16 -2.17 16 12 C -0.07 -1.80 0.83 -52.61 -0.04 -1.85 16 13 C 0.11 2.85 7.56 83.32 0.63 3.48 16 14 N -0.64 -16.54 3.46 -863.73 -2.99 -19.53 16 15 C 0.61 19.21 8.02 86.33 0.69 19.90 16 16 O -0.59 -24.26 16.91 -4.47 -0.08 -24.34 16 17 C -0.35 -8.58 6.44 24.06 0.16 -8.42 16 18 S 0.33 4.01 19.89 -56.49 -1.12 2.88 16 19 C -0.19 -1.69 10.91 66.80 0.73 -0.96 16 20 C -0.19 -2.75 10.15 21.12 0.21 -2.53 16 21 C 0.14 3.33 7.48 21.84 0.16 3.50 16 22 F -0.13 -4.00 16.42 44.97 0.74 -3.26 16 23 C 0.11 1.87 6.35 83.22 0.53 2.40 16 24 C -0.10 -3.13 5.26 30.57 0.16 -2.97 16 25 C 0.13 5.31 4.14 86.43 0.36 5.67 16 26 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.06 2.14 7.92 -2.39 -0.02 2.12 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 31 H 0.11 2.35 8.06 -2.39 -0.02 2.33 16 32 H 0.05 1.67 7.53 -2.39 -0.02 1.65 16 33 H 0.22 0.05 8.06 -2.91 -0.02 0.03 16 34 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.09 1.38 6.37 -2.39 -0.02 1.36 16 36 H 0.13 1.38 8.09 -2.39 -0.02 1.36 16 37 H 0.05 1.75 7.95 -2.39 -0.02 1.74 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.05 2.19 4.66 -2.38 -0.01 2.18 16 40 H 0.02 0.73 6.93 -2.39 -0.02 0.71 16 Total: -1.00 -79.79 335.09 3.24 -76.55 By element: Atomic # 1 Polarization: -2.28 SS G_CDS: 1.00 Total: -1.28 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: 5.58 Total: 7.90 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.56 Total: -107.47 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.08 Total: -24.34 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.74 Total: -3.26 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.69 Total: 49.02 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.12 Total: 2.88 kcal Total: -79.79 3.24 -76.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050509366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.960 kcal (2) G-P(sol) polarization free energy of solvation -79.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds