Wall clock time and date at job start Tue Mar 31 2020 13:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48509 * 109.47067 * 355.35331 * 3 2 1 5 5 H 1.48499 * 109.47130 * 235.35311 * 3 2 1 6 6 H 1.48497 * 109.47427 * 115.35153 * 3 2 1 7 7 C 1.38804 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00151 * 352.36780 * 7 2 1 9 9 N 1.36942 * 119.99713 * 172.37074 * 7 2 1 10 10 C 1.47281 * 135.92939 * 6.42361 * 9 7 2 11 11 C 1.52599 * 87.57738 * 153.92497 * 10 9 7 12 12 C 1.47284 * 135.92786 * 186.79235 * 9 7 2 13 13 C 1.53348 * 116.36482 * 269.04968 * 11 10 9 14 14 C 1.54774 * 103.67263 * 205.95853 * 13 11 10 15 15 C 1.54555 * 104.07821 * 359.14144 * 14 13 11 16 16 H 1.09002 * 110.32443 * 264.69771 * 15 14 13 17 17 C 1.52997 * 110.32138 * 142.48979 * 15 14 13 18 18 N 1.46507 * 109.46647 * 179.97438 * 17 15 14 19 19 C 1.34781 * 119.99725 * 179.97438 * 18 17 15 20 20 O 1.21564 * 119.99984 * 0.02562 * 19 18 17 21 21 C 1.47752 * 120.00036 * 180.02562 * 19 18 17 22 22 C 1.39348 * 124.11778 * 179.97438 * 21 19 18 23 23 N 1.30090 * 112.14554 * 179.97438 * 22 21 19 24 24 S 1.55917 * 108.75307 * 0.02562 * 23 22 21 25 25 N 1.31487 * 124.11481 * 359.70012 * 21 19 18 26 26 O 1.43112 * 116.33144 * 142.33314 * 11 10 9 27 27 H 0.97008 * 119.99965 * 184.91509 * 1 2 3 28 28 H 1.08999 * 113.51942 * 268.58032 * 10 9 7 29 29 H 1.09003 * 113.51069 * 39.17267 * 10 9 7 30 30 H 1.09003 * 113.51384 * 320.83034 * 12 9 7 31 31 H 1.08998 * 113.51757 * 91.34992 * 12 9 7 32 32 H 1.08997 * 110.58450 * 324.50411 * 13 11 10 33 33 H 1.09000 * 110.58084 * 87.26471 * 13 11 10 34 34 H 1.08995 * 110.50532 * 117.78949 * 14 13 11 35 35 H 1.08997 * 110.50350 * 240.49366 * 14 13 11 36 36 H 1.09000 * 109.47162 * 299.99510 * 17 15 14 37 37 H 1.08993 * 109.47304 * 60.00279 * 17 15 14 38 38 H 0.96998 * 120.00135 * 0.02562 * 18 17 15 39 39 H 1.08004 * 123.92637 * 359.94737 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2890 2.7442 -0.1134 5 1 3.1870 1.6484 -1.1518 6 1 3.0168 1.7468 1.2652 7 6 2.0102 -1.2021 0.0005 8 1 1.4774 -2.1332 0.1252 9 7 3.3705 -1.2074 -0.1569 10 6 4.4310 -0.1881 -0.2330 11 6 5.3987 -1.2496 0.2821 12 6 4.4117 -2.2345 -0.3307 13 6 5.5758 -1.3290 1.8032 14 6 6.9918 -1.9295 1.9758 15 6 7.4824 -2.1577 0.5281 16 1 7.2856 -3.1843 0.2190 17 6 8.9761 -1.8455 0.4178 18 7 9.4211 -2.0683 -0.9601 19 6 10.7090 -1.8549 -1.2952 20 8 11.5015 -1.4780 -0.4539 21 6 11.1577 -2.0790 -2.6850 22 6 12.4657 -1.8852 -3.1249 23 7 12.6018 -2.1518 -4.3909 24 16 11.2209 -2.5988 -4.9603 25 7 10.3726 -2.4907 -3.6561 26 8 6.7152 -1.2342 -0.2789 27 1 -0.4850 -0.8370 0.0720 28 1 4.6465 0.1403 -1.2498 29 1 4.2861 0.6425 0.4578 30 1 4.2506 -3.1243 0.2779 31 1 4.6211 -2.4694 -1.3743 32 1 5.5244 -0.3350 2.2474 33 1 4.8233 -1.9836 2.2430 34 1 7.6441 -1.2265 2.4938 35 1 6.9423 -2.8751 2.5157 36 1 9.1512 -0.8054 0.6929 37 1 9.5342 -2.4978 1.0894 38 1 8.7887 -2.3686 -1.6315 39 1 13.2724 -1.5518 -2.4889 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053574370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:28 Heat of formation + Delta-G solvation = 49.886191 kcal Electronic energy + Delta-G solvation = -24722.096554 eV Core-core repulsion = 20987.526053 eV Total energy + Delta-G solvation = -3734.570501 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.47452 -40.37423 -39.25529 -37.01998 -34.92908 -33.89683 -32.36189 -32.07831 -29.78531 -27.96441 -26.97152 -25.64543 -24.35054 -22.82967 -21.53820 -21.39260 -20.53480 -19.77406 -19.17465 -18.12042 -17.47631 -16.73867 -16.42071 -16.00587 -15.92035 -15.70007 -15.02431 -14.92787 -14.70309 -14.08057 -13.70700 -13.35326 -13.06975 -13.05388 -12.65362 -12.46998 -11.99829 -11.84946 -11.60284 -11.58324 -11.56811 -11.43297 -11.34128 -11.07283 -10.71157 -10.47875 -10.41535 -10.35982 -9.72986 -9.66543 -9.34510 -9.27476 -8.98756 -8.90853 -7.20916 -6.37108 -3.28614 0.02647 0.98525 1.15633 1.21753 2.73330 2.80401 3.38932 3.42800 3.61963 3.79544 4.08775 4.45054 4.50097 4.55639 4.62123 4.71157 4.77701 4.87796 4.94775 5.06815 5.11891 5.30624 5.37126 5.40441 5.54054 5.72363 5.85392 5.96086 6.07306 6.13319 6.14134 6.19144 6.24005 6.29287 6.33047 6.51006 7.00988 7.15824 7.20579 7.77300 8.18241 8.92061 9.44210 10.28988 11.15629 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.002762 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.906402 B =10133.943474 C =10894.338770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.023 4.023 3 Si 1.068 2.932 4 H -0.294 1.294 5 H -0.285 1.285 6 H -0.292 1.292 7 C -0.304 4.304 8 H 0.084 0.916 9 N -0.619 5.619 10 C 0.115 3.885 11 C 0.059 3.941 12 C 0.111 3.889 13 C -0.114 4.114 14 C -0.144 4.144 15 C 0.061 3.939 16 H 0.076 0.924 17 C 0.127 3.873 18 N -0.700 5.700 19 C 0.604 3.396 20 O -0.527 6.527 21 C 0.011 3.989 22 C 0.090 3.910 23 N -0.580 5.580 24 S 0.725 5.275 25 N -0.544 5.544 26 O -0.354 6.354 27 H 0.261 0.739 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.923 -6.901 -4.104 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.222 4.222 3 Si 0.900 3.100 4 H -0.221 1.221 5 H -0.212 1.212 6 H -0.221 1.221 7 C -0.430 4.430 8 H 0.102 0.898 9 N -0.350 5.350 10 C -0.010 4.010 11 C 0.018 3.982 12 C -0.016 4.016 13 C -0.152 4.152 14 C -0.183 4.183 15 C 0.003 3.997 16 H 0.094 0.906 17 C 0.004 3.996 18 N -0.351 5.351 19 C 0.384 3.616 20 O -0.403 6.403 21 C -0.164 4.164 22 C -0.104 4.104 23 N -0.421 5.421 24 S 0.766 5.234 25 N -0.394 5.394 26 O -0.272 6.272 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.252 0.748 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 24.556 -5.449 -5.654 25.780 hybrid contribution 0.232 -1.472 1.427 2.063 sum 24.787 -6.922 -4.227 26.080 Atomic orbital electron populations 1.70930 1.05297 1.29476 1.51658 1.25742 0.96431 1.00987 0.99009 0.83731 0.73887 0.75994 0.76362 1.22077 1.21184 1.22064 1.20084 0.78097 0.95884 1.48945 0.89795 1.45750 1.02018 1.01625 1.85561 1.22680 0.85999 0.93183 0.99180 1.23654 0.81692 1.00187 0.92628 1.22671 0.87343 0.93483 0.98119 1.22338 0.95842 1.02501 0.94537 1.22948 0.97374 1.02101 0.95849 1.23222 0.90360 0.94473 0.91671 0.90593 1.21621 0.92692 1.03072 0.82234 1.45742 1.09512 1.67054 1.12807 1.16711 0.82704 0.78032 0.84121 1.90836 1.53684 1.46767 1.49046 1.22514 0.91398 1.06364 0.96106 1.23781 0.97583 0.98974 0.90050 1.72266 1.32015 1.22297 1.15480 1.79160 0.85610 1.43494 1.15120 1.72461 1.39078 1.20363 1.07506 1.88962 1.21490 1.62822 1.53921 0.92862 0.92846 0.92527 0.93503 0.93778 0.90348 0.89609 0.90306 0.90208 0.89977 0.89651 0.74829 0.76885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.23 13.70 55.49 0.76 -28.47 16 2 C -0.02 -0.67 5.50 -17.43 -0.10 -0.77 16 3 Si 1.07 26.74 25.13 -169.99 -4.27 22.47 16 4 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 5 H -0.28 -6.74 6.10 56.52 0.34 -6.39 16 6 H -0.29 -6.87 6.63 56.52 0.37 -6.49 16 7 C -0.30 -8.68 11.07 -15.06 -0.17 -8.85 16 8 H 0.08 2.51 8.05 -52.48 -0.42 2.09 16 9 N -0.62 -15.13 3.68 -184.90 -0.68 -15.81 16 10 C 0.12 2.48 5.28 -7.71 -0.04 2.44 16 11 C 0.06 1.03 1.39 -91.01 -0.13 0.91 16 12 C 0.11 2.17 8.18 -7.86 -0.06 2.11 16 13 C -0.11 -1.70 6.50 -25.62 -0.17 -1.87 16 14 C -0.14 -1.57 6.65 -24.98 -0.17 -1.73 16 15 C 0.06 0.70 3.35 -25.92 -0.09 0.61 16 16 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 17 C 0.13 1.31 5.28 -4.04 -0.02 1.29 16 18 N -0.70 -7.58 5.51 -61.28 -0.34 -7.92 16 19 C 0.60 6.93 7.82 -12.37 -0.10 6.83 16 20 O -0.53 -7.09 16.80 5.31 0.09 -7.00 16 21 C 0.01 0.11 6.81 -83.71 -0.57 -0.46 16 22 C 0.09 0.78 11.22 -17.88 -0.20 0.58 16 23 N -0.58 -5.07 11.41 19.42 0.22 -4.85 16 24 S 0.72 5.13 23.69 -107.50 -2.55 2.58 16 25 N -0.54 -5.23 11.00 23.17 0.25 -4.97 16 26 O -0.35 -5.47 11.12 -35.23 -0.39 -5.87 16 27 H 0.26 8.07 8.73 -40.82 -0.36 7.72 16 28 H 0.05 1.18 7.67 -51.93 -0.40 0.78 16 29 H 0.06 1.25 4.69 -51.93 -0.24 1.00 16 30 H 0.05 0.86 8.07 -51.93 -0.42 0.45 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 33 H 0.09 1.33 7.92 -51.93 -0.41 0.92 16 34 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.42 4.44 8.06 -40.82 -0.33 4.11 16 39 H 0.21 1.44 8.06 -52.48 -0.42 1.01 16 LS Contribution 338.91 15.07 5.11 5.11 Total: -1.00 -34.03 338.91 -8.43 -42.46 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -4.83 Total: 1.17 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.80 Total: 1.09 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.22 Total: -62.01 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.30 Total: -12.87 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.27 Total: 22.47 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -2.55 Total: 2.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.03 -8.43 -42.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053574370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.343 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds