Wall clock time and date at job start Tue Mar 31 2020 13:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48509 * 109.47067 * 355.35331 * 3 2 1 5 5 H 1.48499 * 109.47130 * 235.35311 * 3 2 1 6 6 H 1.48497 * 109.47427 * 115.35153 * 3 2 1 7 7 C 1.38804 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00151 * 352.36780 * 7 2 1 9 9 N 1.36942 * 119.99713 * 172.37074 * 7 2 1 10 10 C 1.47281 * 135.92939 * 6.42361 * 9 7 2 11 11 C 1.52599 * 87.57738 * 153.92497 * 10 9 7 12 12 C 1.47284 * 135.92786 * 186.79235 * 9 7 2 13 13 C 1.53348 * 116.36482 * 269.04968 * 11 10 9 14 14 C 1.54774 * 103.67263 * 205.95853 * 13 11 10 15 15 C 1.54555 * 104.07821 * 359.14144 * 14 13 11 16 16 H 1.09002 * 110.32443 * 264.69771 * 15 14 13 17 17 C 1.52997 * 110.32138 * 142.48979 * 15 14 13 18 18 N 1.46507 * 109.46647 * 179.97438 * 17 15 14 19 19 C 1.34781 * 119.99725 * 179.97438 * 18 17 15 20 20 O 1.21564 * 119.99984 * 0.02562 * 19 18 17 21 21 C 1.47752 * 120.00036 * 180.02562 * 19 18 17 22 22 C 1.39348 * 124.11778 * 179.97438 * 21 19 18 23 23 N 1.30090 * 112.14554 * 179.97438 * 22 21 19 24 24 S 1.55917 * 108.75307 * 0.02562 * 23 22 21 25 25 N 1.31487 * 124.11481 * 359.70012 * 21 19 18 26 26 O 1.43112 * 116.33144 * 142.33314 * 11 10 9 27 27 H 0.97008 * 119.99965 * 184.91509 * 1 2 3 28 28 H 1.08999 * 113.51942 * 268.58032 * 10 9 7 29 29 H 1.09003 * 113.51069 * 39.17267 * 10 9 7 30 30 H 1.09003 * 113.51384 * 320.83034 * 12 9 7 31 31 H 1.08998 * 113.51757 * 91.34992 * 12 9 7 32 32 H 1.08997 * 110.58450 * 324.50411 * 13 11 10 33 33 H 1.09000 * 110.58084 * 87.26471 * 13 11 10 34 34 H 1.08995 * 110.50532 * 117.78949 * 14 13 11 35 35 H 1.08997 * 110.50350 * 240.49366 * 14 13 11 36 36 H 1.09000 * 109.47162 * 299.99510 * 17 15 14 37 37 H 1.08993 * 109.47304 * 60.00279 * 17 15 14 38 38 H 0.96998 * 120.00135 * 0.02562 * 18 17 15 39 39 H 1.08004 * 123.92637 * 359.94737 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2890 2.7442 -0.1134 5 1 3.1870 1.6484 -1.1518 6 1 3.0168 1.7468 1.2652 7 6 2.0102 -1.2021 0.0005 8 1 1.4774 -2.1332 0.1252 9 7 3.3705 -1.2074 -0.1569 10 6 4.4310 -0.1881 -0.2330 11 6 5.3987 -1.2496 0.2821 12 6 4.4117 -2.2345 -0.3307 13 6 5.5758 -1.3290 1.8032 14 6 6.9918 -1.9295 1.9758 15 6 7.4824 -2.1577 0.5281 16 1 7.2856 -3.1843 0.2190 17 6 8.9761 -1.8455 0.4178 18 7 9.4211 -2.0683 -0.9601 19 6 10.7090 -1.8549 -1.2952 20 8 11.5015 -1.4780 -0.4539 21 6 11.1577 -2.0790 -2.6850 22 6 12.4657 -1.8852 -3.1249 23 7 12.6018 -2.1518 -4.3909 24 16 11.2209 -2.5988 -4.9603 25 7 10.3726 -2.4907 -3.6561 26 8 6.7152 -1.2342 -0.2789 27 1 -0.4850 -0.8370 0.0720 28 1 4.6465 0.1403 -1.2498 29 1 4.2861 0.6425 0.4578 30 1 4.2506 -3.1243 0.2779 31 1 4.6211 -2.4694 -1.3743 32 1 5.5244 -0.3350 2.2474 33 1 4.8233 -1.9836 2.2430 34 1 7.6441 -1.2265 2.4938 35 1 6.9423 -2.8751 2.5157 36 1 9.1512 -0.8054 0.6929 37 1 9.5342 -2.4978 1.0894 38 1 8.7887 -2.3686 -1.6315 39 1 13.2724 -1.5518 -2.4889 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053574370.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:27 Heat of formation + Delta-G solvation = 22.271968 kcal Electronic energy + Delta-G solvation = -24723.293997 eV Core-core repulsion = 20987.526053 eV Total energy + Delta-G solvation = -3735.767943 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.18398 -41.67501 -40.13535 -38.40766 -35.88886 -34.68105 -34.42113 -33.13296 -31.01430 -29.20909 -28.17993 -27.27685 -25.40531 -23.78446 -23.18080 -22.31534 -21.35713 -20.76514 -20.39456 -19.52853 -18.90700 -17.70544 -17.46429 -17.18433 -16.88373 -16.57695 -16.42224 -16.13491 -15.71892 -15.45091 -15.16173 -14.85862 -14.59806 -14.21919 -13.66460 -13.38088 -13.29167 -13.14875 -12.80582 -12.68174 -12.56165 -12.47846 -12.27926 -12.24127 -12.09774 -12.04669 -11.64525 -11.40401 -11.25408 -11.23267 -11.03808 -10.48895 -10.36887 -10.08777 -9.25682 -8.68713 -5.51692 -0.65517 0.35234 0.45478 0.62078 1.37205 1.45741 1.64805 1.94160 2.00918 2.50246 2.59506 2.93978 3.22624 3.37554 3.41252 3.58060 3.66574 3.72200 3.96051 4.04384 4.11582 4.37001 4.41957 4.47221 4.48566 4.54028 4.60826 4.67687 4.80050 4.84628 4.94612 5.01230 5.09979 5.12310 5.23041 5.24689 5.35725 5.90415 5.95959 6.32924 6.65164 6.94445 7.27335 8.20344 8.86940 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018776 B = 0.002762 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.906402 B =10133.943474 C =10894.338770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.081 4.081 3 Si 1.103 2.897 4 H -0.302 1.302 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.289 4.289 8 H 0.056 0.944 9 N -0.648 5.648 10 C 0.103 3.897 11 C 0.084 3.916 12 C 0.109 3.891 13 C -0.118 4.118 14 C -0.132 4.132 15 C 0.060 3.940 16 H 0.090 0.910 17 C 0.131 3.869 18 N -0.700 5.700 19 C 0.605 3.395 20 O -0.552 6.552 21 C -0.006 4.006 22 C 0.090 3.910 23 N -0.599 5.599 24 S 0.789 5.211 25 N -0.566 5.566 26 O -0.364 6.364 27 H 0.248 0.752 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.416 0.584 39 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.925 -7.292 -4.012 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.273 4.273 3 Si 0.930 3.070 4 H -0.230 1.230 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.416 4.416 8 H 0.074 0.926 9 N -0.378 5.378 10 C -0.022 4.022 11 C 0.043 3.957 12 C -0.017 4.017 13 C -0.156 4.156 14 C -0.170 4.170 15 C 0.002 3.998 16 H 0.108 0.892 17 C 0.008 3.992 18 N -0.350 5.350 19 C 0.386 3.614 20 O -0.430 6.430 21 C -0.179 4.179 22 C -0.102 4.102 23 N -0.441 5.441 24 S 0.831 5.169 25 N -0.418 5.418 26 O -0.282 6.282 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.252 0.748 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 27.615 -5.879 -5.551 28.775 hybrid contribution -0.647 -1.504 1.257 2.064 sum 26.968 -7.383 -4.294 28.288 Atomic orbital electron populations 1.71027 1.06573 1.28757 1.54944 1.26980 0.96478 1.04408 0.99421 0.83315 0.73306 0.72232 0.78170 1.23023 1.19170 1.19452 1.19955 0.80442 0.94658 1.46575 0.92582 1.45778 1.01433 1.04719 1.85894 1.22818 0.86434 0.93790 0.99171 1.23141 0.82080 0.96475 0.94037 1.22847 0.86437 0.93631 0.98768 1.22372 0.98297 1.02739 0.92220 1.22941 0.94751 1.03625 0.95706 1.23456 0.90420 0.94279 0.91604 0.89200 1.21641 0.91975 1.03198 0.82416 1.45772 1.09415 1.66757 1.13079 1.16856 0.82566 0.77467 0.84525 1.90815 1.54245 1.48026 1.49937 1.22343 0.91953 1.07940 0.95702 1.23918 0.97540 0.98595 0.90168 1.72208 1.33238 1.22978 1.15640 1.78908 0.84035 1.40913 1.13070 1.72307 1.40211 1.20820 1.08473 1.88948 1.20444 1.63996 1.54832 0.94270 0.93245 0.92694 0.92295 0.93359 0.90490 0.90468 0.88478 0.87655 0.90671 0.87584 0.74761 0.75633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.62 13.70 21.65 0.30 -62.33 16 2 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16 3 Si 1.10 53.98 25.13 68.60 1.72 55.70 16 4 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 5 H -0.27 -12.04 6.10 99.48 0.61 -11.44 16 6 H -0.27 -11.90 6.63 99.48 0.66 -11.24 16 7 C -0.29 -16.79 11.07 84.03 0.93 -15.86 16 8 H 0.06 3.48 8.05 -2.91 -0.02 3.46 16 9 N -0.65 -31.34 3.68 -740.40 -2.73 -34.07 16 10 C 0.10 4.28 5.28 83.58 0.44 4.72 16 11 C 0.08 2.74 1.39 -11.04 -0.02 2.73 16 12 C 0.11 4.11 8.18 83.48 0.68 4.79 16 13 C -0.12 -3.20 6.50 31.32 0.20 -2.99 16 14 C -0.13 -2.33 6.65 31.73 0.21 -2.12 16 15 C 0.06 1.16 3.35 31.12 0.10 1.26 16 16 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 17 C 0.13 2.29 5.28 86.38 0.46 2.75 16 18 N -0.70 -13.63 5.51 -466.05 -2.57 -16.20 16 19 C 0.60 12.91 7.82 86.76 0.68 13.59 16 20 O -0.55 -14.06 16.80 -3.92 -0.07 -14.12 16 21 C -0.01 -0.11 6.81 41.98 0.29 0.17 16 22 C 0.09 1.43 11.22 85.22 0.96 2.39 16 23 N -0.60 -9.35 11.41 -92.49 -1.06 -10.41 16 24 S 0.79 9.52 23.69 -56.49 -1.34 8.19 16 25 N -0.57 -9.87 11.00 -80.62 -0.89 -10.76 16 26 O -0.36 -10.25 11.12 -148.98 -1.66 -11.90 16 27 H 0.25 16.04 8.73 -92.70 -0.81 15.23 16 28 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 29 H 0.06 2.31 4.69 -2.39 -0.01 2.30 16 30 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.11 8.11 -2.39 -0.02 2.09 16 33 H 0.08 2.23 7.92 -2.39 -0.02 2.21 16 34 H 0.10 1.41 7.87 -2.39 -0.02 1.40 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.42 8.02 8.06 -92.71 -0.75 7.28 16 39 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -74.82 338.91 -2.71 -77.53 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.17 Total: 11.32 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.40 Total: 7.05 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -6.94 Total: -133.76 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.72 Total: -26.03 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 1.72 Total: 55.70 kcal Atomic # 16 Polarization: 9.52 SS G_CDS: -1.34 Total: 8.19 kcal Total: -74.82 -2.71 -77.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053574370.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.799 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds