Wall clock time and date at job start Tue Mar 31 2020 13:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99783 * 2 1 4 4 H 1.48498 * 109.46909 * 354.95165 * 3 2 1 5 5 H 1.48501 * 109.47182 * 114.95220 * 3 2 1 6 6 H 1.48498 * 109.47180 * 234.94819 * 3 2 1 7 7 C 1.38808 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99752 * 354.47531 * 7 2 1 9 9 N 1.36931 * 120.00292 * 174.46509 * 7 2 1 10 10 C 1.47208 * 135.97384 * 7.19208 * 9 7 2 11 11 C 1.53009 * 87.68431 * 153.59562 * 10 9 7 12 12 C 1.47215 * 135.97443 * 187.55912 * 9 7 2 13 13 C 1.53657 * 115.10724 * 140.91322 * 11 10 9 14 14 C 1.55481 * 101.96936 * 111.49406 * 13 11 10 15 15 C 1.55014 * 101.04355 * 33.48833 * 14 13 11 16 16 H 1.08998 * 110.30603 * 82.89361 * 15 14 13 17 17 C 1.53005 * 110.38471 * 205.00118 * 15 14 13 18 18 N 1.46493 * 109.47249 * 182.25456 * 17 15 14 19 19 C 1.34779 * 119.99831 * 179.97438 * 18 17 15 20 20 O 1.21566 * 120.00182 * 0.02562 * 19 18 17 21 21 C 1.47755 * 119.99784 * 180.02562 * 19 18 17 22 22 C 1.39350 * 124.11650 * 180.02562 * 21 19 18 23 23 N 1.30087 * 112.14800 * 179.97438 * 22 21 19 24 24 S 1.55925 * 108.75568 * 359.97438 * 23 22 21 25 25 N 1.31492 * 124.11766 * 359.70019 * 21 19 18 26 26 O 1.42396 * 116.33423 * 269.49336 * 11 10 9 27 27 H 0.97006 * 120.00008 * 174.91184 * 1 2 3 28 28 H 1.09000 * 113.49943 * 268.27290 * 10 9 7 29 29 H 1.09003 * 113.49778 * 38.81366 * 10 9 7 30 30 H 1.09003 * 113.49576 * 321.19046 * 12 9 7 31 31 H 1.08997 * 113.49904 * 91.72590 * 12 9 7 32 32 H 1.09000 * 110.93229 * 229.66707 * 13 11 10 33 33 H 1.09002 * 110.92978 * 353.32576 * 13 11 10 34 34 H 1.08993 * 111.11023 * 275.54152 * 14 13 11 35 35 H 1.09004 * 111.13996 * 151.44239 * 14 13 11 36 36 H 1.09000 * 109.46851 * 302.25859 * 17 15 14 37 37 H 1.09004 * 109.47187 * 62.25524 * 17 15 14 38 38 H 0.97003 * 120.00486 * 0.02562 * 18 17 15 39 39 H 1.08001 * 123.92653 * 359.93798 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2897 2.7438 -0.1232 5 1 3.0091 1.7512 1.2694 6 1 3.1939 1.6445 -1.1461 7 6 2.0103 -1.2021 0.0005 8 1 1.4740 -2.1352 0.0910 9 7 3.3748 -1.2048 -0.1138 10 6 4.4382 -0.1869 -0.1242 11 6 5.3901 -1.2654 0.3972 12 6 4.4205 -2.2265 -0.2868 13 6 6.8062 -1.2283 -0.1982 14 6 7.6595 -0.7932 1.0265 15 6 6.8841 -1.4716 2.1848 16 1 7.1842 -2.5150 2.2808 17 6 7.1293 -0.7266 3.4985 18 7 6.4318 -1.4146 4.5876 19 6 6.5063 -0.9347 5.8449 20 8 7.1518 0.0693 6.0750 21 6 5.8032 -1.6290 6.9434 22 6 5.8214 -1.2087 8.2719 23 7 5.1243 -1.9906 9.0432 24 16 4.5122 -3.1335 8.1770 25 7 5.0792 -2.7153 6.7856 26 8 5.4969 -1.3833 1.8122 27 1 -0.4850 -0.8368 -0.0745 28 1 4.6897 0.1687 -1.1234 29 1 4.2695 0.6250 0.5833 30 1 4.2367 -3.1373 0.2832 31 1 4.6672 -2.4236 -1.3301 32 1 7.1062 -2.2150 -0.5511 33 1 6.8723 -0.4928 -0.9999 34 1 7.6620 0.2910 1.1379 35 1 8.6759 -1.1804 0.9549 36 1 8.1985 -0.7035 3.7090 37 1 6.7537 0.2932 3.4135 38 1 5.9170 -2.2160 4.4041 39 1 6.3530 -0.3357 8.6207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053574371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:31 Heat of formation + Delta-G solvation = 52.584844 kcal Electronic energy + Delta-G solvation = -25020.082310 eV Core-core repulsion = 21285.628832 eV Total energy + Delta-G solvation = -3734.453478 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34742 -40.27760 -39.13135 -36.92859 -34.80564 -33.76882 -32.35838 -32.07464 -29.81750 -27.90684 -26.83803 -25.48610 -24.28015 -22.79625 -21.60126 -21.09222 -20.44885 -19.64598 -19.31857 -18.00496 -17.49272 -16.81189 -16.30955 -16.02646 -15.81849 -15.58691 -14.92323 -14.62627 -14.16134 -13.93136 -13.83714 -13.31463 -13.25401 -12.99913 -12.61576 -12.52881 -12.21806 -11.72681 -11.70968 -11.64475 -11.46760 -11.38055 -11.30694 -10.83414 -10.69169 -10.41856 -10.30189 -10.27254 -9.67158 -9.53857 -9.21637 -9.09056 -8.88654 -8.77413 -7.12797 -6.24856 -3.17715 0.15441 1.10998 1.27995 1.34255 2.83395 2.94692 3.42702 3.48721 3.66912 3.73182 4.20654 4.42996 4.56043 4.64061 4.64795 4.77093 4.83922 4.87478 4.94041 5.08096 5.18467 5.31325 5.40146 5.47673 5.52523 5.69332 5.84632 5.90390 6.03764 6.08594 6.17716 6.21189 6.23373 6.31652 6.41965 6.48907 7.14932 7.27822 7.44889 7.89695 8.27718 9.02028 9.54415 10.40425 11.25489 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003650 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.166162 B = 7668.487902 C = 8858.461016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.025 4.025 3 Si 1.069 2.931 4 H -0.295 1.295 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.298 4.298 8 H 0.082 0.918 9 N -0.621 5.621 10 C 0.092 3.908 11 C 0.070 3.930 12 C 0.116 3.884 13 C -0.137 4.137 14 C -0.145 4.145 15 C 0.061 3.939 16 H 0.077 0.923 17 C 0.122 3.878 18 N -0.699 5.699 19 C 0.605 3.395 20 O -0.528 6.528 21 C 0.012 3.988 22 C 0.090 3.910 23 N -0.580 5.580 24 S 0.724 5.276 25 N -0.543 5.543 26 O -0.332 6.332 27 H 0.260 0.740 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.415 0.585 39 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.610 -6.409 11.456 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.223 4.223 3 Si 0.902 3.098 4 H -0.223 1.223 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.424 4.424 8 H 0.100 0.900 9 N -0.349 5.349 10 C -0.034 4.034 11 C 0.029 3.971 12 C -0.010 4.010 13 C -0.176 4.176 14 C -0.183 4.183 15 C 0.003 3.997 16 H 0.095 0.905 17 C -0.001 4.001 18 N -0.350 5.350 19 C 0.385 3.615 20 O -0.404 6.404 21 C -0.163 4.163 22 C -0.104 4.104 23 N -0.421 5.421 24 S 0.765 5.235 25 N -0.393 5.393 26 O -0.250 6.250 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.252 0.748 39 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 17.171 -5.664 12.408 21.929 hybrid contribution 1.005 -0.703 -0.831 1.481 sum 18.176 -6.367 11.577 22.471 Atomic orbital electron populations 1.70914 1.05397 1.29086 1.52502 1.25675 0.96444 1.00896 0.99299 0.83739 0.73824 0.76098 0.76171 1.22264 1.22002 1.21514 1.20124 0.77949 0.95811 1.48553 0.90021 1.45840 1.01386 1.01931 1.85725 1.23125 0.87772 0.94329 0.98162 1.23202 0.93062 0.99621 0.81251 1.22638 0.87392 0.94160 0.96837 1.22908 0.93941 1.02619 0.98114 1.23219 0.99307 1.01849 0.93956 1.23312 0.83887 0.98969 0.93512 0.90501 1.21672 0.97148 0.97296 0.84000 1.45709 1.51937 1.30975 1.06380 1.16706 0.80094 0.83269 0.81438 1.90827 1.42002 1.24366 1.83213 1.22509 1.02483 0.94634 0.96694 1.23768 0.97843 1.00881 0.87903 1.72260 1.18062 1.12451 1.39326 1.79129 1.37316 1.23720 0.83314 1.72464 1.15809 1.17583 1.33429 1.88458 1.22220 1.93645 1.20687 0.93020 0.92742 0.92316 0.93189 0.93445 0.90215 0.89574 0.89828 0.89793 0.89725 0.90000 0.74828 0.76897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.36 13.70 55.49 0.76 -29.60 16 2 C -0.02 -0.76 5.50 -17.43 -0.10 -0.86 16 3 Si 1.07 27.78 25.17 -169.99 -4.28 23.50 16 4 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 5 H -0.29 -7.37 6.49 56.52 0.37 -7.01 16 6 H -0.29 -6.85 6.19 56.52 0.35 -6.50 16 7 C -0.30 -8.90 11.08 -15.06 -0.17 -9.07 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 9 N -0.62 -15.78 3.70 -184.59 -0.68 -16.46 16 10 C 0.09 1.98 5.17 -7.92 -0.04 1.93 16 11 C 0.07 1.21 1.75 -90.43 -0.16 1.05 16 12 C 0.12 2.32 8.20 -8.07 -0.07 2.25 16 13 C -0.14 -1.64 6.39 -25.07 -0.16 -1.80 16 14 C -0.15 -1.45 6.58 -24.35 -0.16 -1.61 16 15 C 0.06 0.73 3.48 -25.66 -0.09 0.65 16 16 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 17 C 0.12 1.44 5.39 -4.04 -0.02 1.42 16 18 N -0.70 -8.92 5.53 -61.28 -0.34 -9.26 16 19 C 0.60 8.12 7.82 -12.37 -0.10 8.02 16 20 O -0.53 -8.04 16.81 5.31 0.09 -7.95 16 21 C 0.01 0.14 6.81 -83.71 -0.57 -0.43 16 22 C 0.09 0.94 11.22 -17.88 -0.20 0.74 16 23 N -0.58 -6.04 11.41 19.42 0.22 -5.82 16 24 S 0.72 6.40 23.69 -107.50 -2.55 3.86 16 25 N -0.54 -6.30 11.00 23.18 0.26 -6.05 16 26 O -0.33 -5.80 10.84 -35.23 -0.38 -6.19 16 27 H 0.26 8.30 8.73 -40.82 -0.36 7.95 16 28 H 0.06 1.10 7.42 -51.93 -0.39 0.72 16 29 H 0.06 1.36 4.77 -51.93 -0.25 1.11 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.09 0.96 7.81 -51.93 -0.41 0.55 16 34 H 0.08 0.82 8.05 -51.93 -0.42 0.41 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.42 5.28 8.06 -40.82 -0.33 4.95 16 39 H 0.21 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 338.97 15.07 5.11 5.11 Total: -1.00 -36.73 338.97 -8.45 -45.17 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.83 Total: 1.37 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.83 Total: 2.30 kcal Atomic # 7 Polarization: -67.40 SS G_CDS: 0.22 Total: -67.18 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.29 Total: -14.13 kcal Atomic # 14 Polarization: 27.78 SS G_CDS: -4.28 Total: 23.50 kcal Atomic # 16 Polarization: 6.40 SS G_CDS: -2.55 Total: 3.86 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.73 -8.45 -45.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053574371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.760 kcal (2) G-P(sol) polarization free energy of solvation -36.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds