Wall clock time and date at job start Tue Mar 31 2020 13:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99783 * 2 1 4 4 H 1.48498 * 109.46909 * 354.95165 * 3 2 1 5 5 H 1.48501 * 109.47182 * 114.95220 * 3 2 1 6 6 H 1.48498 * 109.47180 * 234.94819 * 3 2 1 7 7 C 1.38808 * 120.00517 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99752 * 354.47531 * 7 2 1 9 9 N 1.36931 * 120.00292 * 174.46509 * 7 2 1 10 10 C 1.47208 * 135.97384 * 7.19208 * 9 7 2 11 11 C 1.53009 * 87.68431 * 153.59562 * 10 9 7 12 12 C 1.47215 * 135.97443 * 187.55912 * 9 7 2 13 13 C 1.53657 * 115.10724 * 140.91322 * 11 10 9 14 14 C 1.55481 * 101.96936 * 111.49406 * 13 11 10 15 15 C 1.55014 * 101.04355 * 33.48833 * 14 13 11 16 16 H 1.08998 * 110.30603 * 82.89361 * 15 14 13 17 17 C 1.53005 * 110.38471 * 205.00118 * 15 14 13 18 18 N 1.46493 * 109.47249 * 182.25456 * 17 15 14 19 19 C 1.34779 * 119.99831 * 179.97438 * 18 17 15 20 20 O 1.21566 * 120.00182 * 0.02562 * 19 18 17 21 21 C 1.47755 * 119.99784 * 180.02562 * 19 18 17 22 22 C 1.39350 * 124.11650 * 180.02562 * 21 19 18 23 23 N 1.30087 * 112.14800 * 179.97438 * 22 21 19 24 24 S 1.55925 * 108.75568 * 359.97438 * 23 22 21 25 25 N 1.31492 * 124.11766 * 359.70019 * 21 19 18 26 26 O 1.42396 * 116.33423 * 269.49336 * 11 10 9 27 27 H 0.97006 * 120.00008 * 174.91184 * 1 2 3 28 28 H 1.09000 * 113.49943 * 268.27290 * 10 9 7 29 29 H 1.09003 * 113.49778 * 38.81366 * 10 9 7 30 30 H 1.09003 * 113.49576 * 321.19046 * 12 9 7 31 31 H 1.08997 * 113.49904 * 91.72590 * 12 9 7 32 32 H 1.09000 * 110.93229 * 229.66707 * 13 11 10 33 33 H 1.09002 * 110.92978 * 353.32576 * 13 11 10 34 34 H 1.08993 * 111.11023 * 275.54152 * 14 13 11 35 35 H 1.09004 * 111.13996 * 151.44239 * 14 13 11 36 36 H 1.09000 * 109.46851 * 302.25859 * 17 15 14 37 37 H 1.09004 * 109.47187 * 62.25524 * 17 15 14 38 38 H 0.97003 * 120.00486 * 0.02562 * 18 17 15 39 39 H 1.08001 * 123.92653 * 359.93798 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2897 2.7438 -0.1232 5 1 3.0091 1.7512 1.2694 6 1 3.1939 1.6445 -1.1461 7 6 2.0103 -1.2021 0.0005 8 1 1.4740 -2.1352 0.0910 9 7 3.3748 -1.2048 -0.1138 10 6 4.4382 -0.1869 -0.1242 11 6 5.3901 -1.2654 0.3972 12 6 4.4205 -2.2265 -0.2868 13 6 6.8062 -1.2283 -0.1982 14 6 7.6595 -0.7932 1.0265 15 6 6.8841 -1.4716 2.1848 16 1 7.1842 -2.5150 2.2808 17 6 7.1293 -0.7266 3.4985 18 7 6.4318 -1.4146 4.5876 19 6 6.5063 -0.9347 5.8449 20 8 7.1518 0.0693 6.0750 21 6 5.8032 -1.6290 6.9434 22 6 5.8214 -1.2087 8.2719 23 7 5.1243 -1.9906 9.0432 24 16 4.5122 -3.1335 8.1770 25 7 5.0792 -2.7153 6.7856 26 8 5.4969 -1.3833 1.8122 27 1 -0.4850 -0.8368 -0.0745 28 1 4.6897 0.1687 -1.1234 29 1 4.2695 0.6250 0.5833 30 1 4.2367 -3.1373 0.2832 31 1 4.6672 -2.4236 -1.3301 32 1 7.1062 -2.2150 -0.5511 33 1 6.8723 -0.4928 -0.9999 34 1 7.6620 0.2910 1.1379 35 1 8.6759 -1.1804 0.9549 36 1 8.1985 -0.7035 3.7090 37 1 6.7537 0.2932 3.4135 38 1 5.9170 -2.2160 4.4041 39 1 6.3530 -0.3357 8.6207 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053574371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:30 Heat of formation + Delta-G solvation = 21.743823 kcal Electronic energy + Delta-G solvation = -25021.419677 eV Core-core repulsion = 21285.628832 eV Total energy + Delta-G solvation = -3735.790845 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.21509 -41.54336 -40.15776 -38.33934 -35.89595 -34.70588 -34.43537 -33.13546 -31.11028 -29.19560 -28.11697 -27.12629 -25.45200 -23.84650 -22.69026 -22.54543 -21.40133 -20.80438 -20.43311 -19.58764 -18.94448 -17.91440 -17.41677 -17.19952 -16.97520 -16.48742 -16.12574 -15.94225 -15.52488 -15.41198 -15.28908 -14.99745 -14.62649 -14.28894 -13.75835 -13.40979 -13.33473 -13.29815 -12.66342 -12.58796 -12.56795 -12.44700 -12.31876 -12.20283 -12.14105 -11.93534 -11.68932 -11.31518 -11.26548 -11.16506 -11.06417 -10.40619 -10.24195 -10.12193 -9.23701 -8.63943 -5.47688 -0.69748 0.31036 0.41336 0.58244 1.32857 1.44077 1.63320 1.88802 2.00122 2.50847 2.60991 3.00892 3.18791 3.36620 3.48216 3.60762 3.64941 3.75797 3.91109 4.00668 4.14908 4.41837 4.44158 4.47440 4.53351 4.58218 4.65566 4.73884 4.83125 4.92912 4.96165 5.04346 5.13894 5.19765 5.20703 5.30852 5.34181 5.92858 6.26029 6.28368 6.68357 6.90134 7.31031 8.26749 8.88317 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011977 B = 0.003650 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.166162 B = 7668.487902 C = 8858.461016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.086 4.086 3 Si 1.110 2.890 4 H -0.303 1.303 5 H -0.287 1.287 6 H -0.251 1.251 7 C -0.286 4.286 8 H 0.047 0.953 9 N -0.660 5.660 10 C 0.080 3.920 11 C 0.089 3.911 12 C 0.111 3.889 13 C -0.128 4.128 14 C -0.135 4.135 15 C 0.057 3.943 16 H 0.098 0.902 17 C 0.122 3.878 18 N -0.700 5.700 19 C 0.602 3.398 20 O -0.552 6.552 21 C -0.007 4.007 22 C 0.090 3.910 23 N -0.597 5.597 24 S 0.790 5.210 25 N -0.569 5.569 26 O -0.369 6.369 27 H 0.245 0.755 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.061 0.939 38 H 0.414 0.586 39 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.239 -6.623 11.243 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.278 4.278 3 Si 0.936 3.064 4 H -0.231 1.231 5 H -0.214 1.214 6 H -0.175 1.175 7 C -0.414 4.414 8 H 0.064 0.936 9 N -0.388 5.388 10 C -0.045 4.045 11 C 0.048 3.952 12 C -0.014 4.014 13 C -0.166 4.166 14 C -0.172 4.172 15 C 0.000 4.000 16 H 0.116 0.884 17 C -0.001 4.001 18 N -0.350 5.350 19 C 0.383 3.617 20 O -0.430 6.430 21 C -0.181 4.181 22 C -0.102 4.102 23 N -0.438 5.438 24 S 0.832 5.168 25 N -0.421 5.421 26 O -0.289 6.289 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 20.878 -5.912 12.177 24.882 hybrid contribution -0.159 -0.859 -0.665 1.098 sum 20.719 -6.771 11.512 24.650 Atomic orbital electron populations 1.71011 1.06710 1.28275 1.55926 1.27000 0.96516 1.04459 0.99775 0.83250 0.73311 0.72051 0.77745 1.23130 1.21446 1.17535 1.19996 0.80824 0.94350 1.46188 0.93555 1.45984 1.00710 1.05774 1.86337 1.23434 0.87673 0.94333 0.99048 1.22880 0.95273 0.95397 0.81689 1.22944 0.86437 0.93443 0.98564 1.22928 0.89931 1.04780 0.98947 1.23265 1.00591 1.01968 0.91412 1.23615 0.81722 1.00525 0.94118 0.88432 1.21768 0.98347 0.96088 0.83884 1.45804 1.51815 1.30863 1.06559 1.16903 0.79836 0.83027 0.81888 1.90800 1.43204 1.25378 1.83664 1.22373 1.03534 0.95263 0.96888 1.23915 0.97718 1.01222 0.87343 1.72205 1.18550 1.13174 1.39916 1.78854 1.34864 1.21793 0.81336 1.72299 1.16368 1.17908 1.35530 1.88429 1.26077 1.93503 1.20857 0.94577 0.90596 0.94171 0.94124 0.90674 0.87678 0.88060 0.89715 0.85838 0.87127 0.92045 0.74945 0.75496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.69 13.70 21.65 0.30 -65.39 16 2 C -0.09 -5.43 5.50 84.86 0.47 -4.96 16 3 Si 1.11 56.67 25.17 68.60 1.73 58.40 16 4 H -0.30 -15.70 7.11 99.48 0.71 -15.00 16 5 H -0.29 -14.21 6.49 99.48 0.65 -13.56 16 6 H -0.25 -11.11 6.19 99.48 0.62 -10.49 16 7 C -0.29 -17.60 11.08 84.03 0.93 -16.67 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 9 N -0.66 -33.34 3.70 -738.98 -2.73 -36.08 16 10 C 0.08 3.26 5.17 83.48 0.43 3.70 16 11 C 0.09 2.83 1.75 -10.67 -0.02 2.81 16 12 C 0.11 4.24 8.20 83.38 0.68 4.93 16 13 C -0.13 -2.39 6.39 31.67 0.20 -2.19 16 14 C -0.13 -1.99 6.58 32.14 0.21 -1.78 16 15 C 0.06 1.19 3.48 31.29 0.11 1.30 16 16 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 17 C 0.12 2.63 5.39 86.38 0.47 3.09 16 18 N -0.70 -17.26 5.53 -466.06 -2.58 -19.84 16 19 C 0.60 15.93 7.82 86.76 0.68 16.61 16 20 O -0.55 -16.60 16.81 -3.92 -0.07 -16.67 16 21 C -0.01 -0.17 6.81 41.98 0.29 0.11 16 22 C 0.09 1.82 11.22 85.22 0.96 2.77 16 23 N -0.60 -11.68 11.41 -92.46 -1.05 -12.74 16 24 S 0.79 12.95 23.69 -56.49 -1.34 11.61 16 25 N -0.57 -12.81 11.00 -80.57 -0.89 -13.70 16 26 O -0.37 -12.27 10.84 -148.98 -1.62 -13.89 16 27 H 0.25 16.58 8.73 -92.70 -0.81 15.77 16 28 H 0.08 2.78 7.42 -2.39 -0.02 2.77 16 29 H 0.04 1.80 4.77 -2.39 -0.01 1.79 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.48 8.13 -2.39 -0.02 2.46 16 32 H 0.10 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.10 1.67 7.81 -2.39 -0.02 1.65 16 34 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 35 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.41 10.29 8.06 -92.71 -0.75 9.54 16 39 H 0.23 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -84.05 338.97 -2.68 -86.74 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.16 Total: 11.85 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 5.40 Total: 9.71 kcal Atomic # 7 Polarization: -140.79 SS G_CDS: -6.95 Total: -147.74 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -1.68 Total: -30.56 kcal Atomic # 14 Polarization: 56.67 SS G_CDS: 1.73 Total: 58.40 kcal Atomic # 16 Polarization: 12.95 SS G_CDS: -1.34 Total: 11.61 kcal Total: -84.05 -2.68 -86.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053574371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.479 kcal (2) G-P(sol) polarization free energy of solvation -84.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds