Wall clock time and date at job start Tue Mar 31 2020 13:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 119.99836 * 2 1 4 4 H 1.48509 * 109.47067 * 355.35331 * 3 2 1 5 5 H 1.48499 * 109.47130 * 235.35311 * 3 2 1 6 6 H 1.48497 * 109.47427 * 115.35153 * 3 2 1 7 7 C 1.38804 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00151 * 352.36780 * 7 2 1 9 9 N 1.36942 * 119.99713 * 172.37074 * 7 2 1 10 10 C 1.47281 * 135.92939 * 6.42361 * 9 7 2 11 11 C 1.52599 * 87.57738 * 153.92497 * 10 9 7 12 12 C 1.47284 * 135.92786 * 186.79235 * 9 7 2 13 13 C 1.53348 * 116.36482 * 269.04968 * 11 10 9 14 14 C 1.54774 * 103.67263 * 205.95853 * 13 11 10 15 15 C 1.54555 * 104.07821 * 359.14144 * 14 13 11 16 16 H 1.09002 * 110.32443 * 264.69771 * 15 14 13 17 17 C 1.52997 * 110.32138 * 142.48979 * 15 14 13 18 18 N 1.46507 * 109.46647 * 179.97438 * 17 15 14 19 19 C 1.34781 * 119.99725 * 179.97438 * 18 17 15 20 20 O 1.21610 * 119.99683 * 0.02562 * 19 18 17 21 21 C 1.47441 * 120.00068 * 180.02562 * 19 18 17 22 22 C 1.37982 * 124.15779 * 179.72995 * 21 19 18 23 23 S 1.72104 * 104.03625 * 179.89756 * 22 21 19 24 24 N 1.56411 * 96.15151 * 0.32138 * 23 22 21 25 25 N 1.27413 * 109.87427 * 359.80601 * 24 23 22 26 26 O 1.43112 * 116.33144 * 142.33314 * 11 10 9 27 27 H 0.97008 * 119.99965 * 184.91509 * 1 2 3 28 28 H 1.08999 * 113.51942 * 268.58032 * 10 9 7 29 29 H 1.09003 * 113.51069 * 39.17267 * 10 9 7 30 30 H 1.09003 * 113.51384 * 320.83034 * 12 9 7 31 31 H 1.08998 * 113.51757 * 91.34992 * 12 9 7 32 32 H 1.08997 * 110.58450 * 324.50411 * 13 11 10 33 33 H 1.09000 * 110.58084 * 87.26471 * 13 11 10 34 34 H 1.08995 * 110.50532 * 117.78949 * 14 13 11 35 35 H 1.08997 * 110.50350 * 240.49366 * 14 13 11 36 36 H 1.09000 * 109.47162 * 299.99510 * 17 15 14 37 37 H 1.08993 * 109.47304 * 60.00279 * 17 15 14 38 38 H 0.96998 * 120.00135 * 0.02562 * 18 17 15 39 39 H 1.07999 * 127.98057 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2890 2.7442 -0.1134 5 1 3.1870 1.6484 -1.1518 6 1 3.0168 1.7468 1.2652 7 6 2.0102 -1.2021 0.0005 8 1 1.4774 -2.1332 0.1252 9 7 3.3705 -1.2074 -0.1569 10 6 4.4310 -0.1881 -0.2330 11 6 5.3987 -1.2496 0.2821 12 6 4.4117 -2.2345 -0.3307 13 6 5.5758 -1.3290 1.8032 14 6 6.9918 -1.9295 1.9758 15 6 7.4824 -2.1577 0.5281 16 1 7.2856 -3.1843 0.2190 17 6 8.9761 -1.8455 0.4178 18 7 9.4211 -2.0683 -0.9601 19 6 10.7090 -1.8549 -1.2952 20 8 11.5018 -1.4779 -0.4536 21 6 11.1568 -2.0786 -2.6820 22 6 12.4506 -1.8822 -3.1196 23 16 12.3931 -2.2929 -4.7900 24 7 10.8697 -2.6455 -4.8236 25 7 10.3631 -2.4885 -3.6651 26 8 6.7152 -1.2342 -0.2789 27 1 -0.4850 -0.8370 0.0720 28 1 4.6465 0.1403 -1.2498 29 1 4.2861 0.6425 0.4578 30 1 4.2506 -3.1243 0.2779 31 1 4.6211 -2.4694 -1.3743 32 1 5.5244 -0.3350 2.2474 33 1 4.8233 -1.9836 2.2430 34 1 7.6441 -1.2265 2.4938 35 1 6.9423 -2.8751 2.5157 36 1 9.1512 -0.8054 0.6929 37 1 9.5342 -2.4978 1.0894 38 1 8.7887 -2.3686 -1.6315 39 1 13.3029 -1.5491 -2.5460 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053634402.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:22 Heat of formation + Delta-G solvation = 33.885005 kcal Electronic energy + Delta-G solvation = -24707.393036 eV Core-core repulsion = 20972.128672 eV Total energy + Delta-G solvation = -3735.264364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.16718 -41.68681 -40.32823 -38.43318 -35.84723 -34.50411 -33.35774 -33.06141 -30.97629 -29.04684 -28.01509 -27.29237 -25.71597 -24.01553 -23.21603 -22.32768 -21.82333 -20.78510 -20.26042 -19.51487 -18.09708 -17.62570 -17.48666 -17.14017 -16.91664 -16.63862 -16.42912 -16.13271 -15.76785 -15.44180 -15.16671 -14.86911 -14.60747 -14.23361 -13.68144 -13.67185 -13.39062 -13.15737 -13.06457 -12.81115 -12.68368 -12.52788 -12.27591 -12.05375 -11.65247 -11.51328 -11.40432 -11.27333 -11.23478 -11.18238 -11.04251 -10.91775 -10.49427 -10.23314 -9.26202 -8.69243 -5.52116 -0.94283 -0.04491 0.29966 0.53235 1.36634 1.45546 1.64472 1.94883 2.01873 2.49866 2.57797 2.75022 2.93695 3.22264 3.38190 3.56712 3.63359 3.67216 3.85332 3.95108 4.10698 4.33536 4.37668 4.41347 4.46653 4.53148 4.60387 4.66776 4.79025 4.84121 4.93596 5.00554 5.09073 5.11091 5.22545 5.24888 5.89902 5.95448 6.17899 6.51463 6.64727 6.92007 7.26813 8.19917 8.86431 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.002701 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.025710 B =10363.230339 C =11101.367519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.081 4.081 3 Si 1.104 2.896 4 H -0.302 1.302 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.289 4.289 8 H 0.056 0.944 9 N -0.648 5.648 10 C 0.103 3.897 11 C 0.083 3.917 12 C 0.108 3.892 13 C -0.118 4.118 14 C -0.132 4.132 15 C 0.059 3.941 16 H 0.090 0.910 17 C 0.131 3.869 18 N -0.702 5.702 19 C 0.605 3.395 20 O -0.555 6.555 21 C -0.048 4.048 22 C -0.234 4.234 23 S 0.561 5.439 24 N -0.335 5.335 25 N -0.237 5.237 26 O -0.365 6.365 27 H 0.248 0.752 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.416 0.584 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.637 -6.070 -3.401 33.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.273 4.273 3 Si 0.930 3.070 4 H -0.229 1.229 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.417 4.417 8 H 0.074 0.926 9 N -0.378 5.378 10 C -0.022 4.022 11 C 0.042 3.958 12 C -0.018 4.018 13 C -0.156 4.156 14 C -0.170 4.170 15 C 0.001 3.999 16 H 0.107 0.893 17 C 0.008 3.992 18 N -0.352 5.352 19 C 0.387 3.613 20 O -0.433 6.433 21 C -0.196 4.196 22 C -0.391 4.391 23 S 0.696 5.304 24 N -0.316 5.316 25 N -0.106 5.106 26 O -0.283 6.283 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.252 0.748 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 32.285 -4.621 -4.755 32.959 hybrid contribution -1.122 -1.653 1.097 2.279 sum 31.163 -6.274 -3.659 31.998 Atomic orbital electron populations 1.71026 1.06548 1.28747 1.54938 1.26988 0.96488 1.04414 0.99404 0.83314 0.73304 0.72231 0.78172 1.22948 1.19300 1.19343 1.19958 0.80427 0.94675 1.46590 0.92585 1.45785 1.01449 1.04693 1.85879 1.22814 0.86439 0.93802 0.99142 1.23149 0.82054 0.96454 0.94099 1.22849 0.86505 0.93682 0.98730 1.22371 0.98292 1.02782 0.92116 1.22940 0.94764 1.03653 0.95600 1.23465 0.90417 0.94287 0.91684 0.89256 1.21645 0.92028 1.03185 0.82368 1.45836 1.09520 1.66660 1.13174 1.16784 0.82551 0.77384 0.84617 1.90817 1.54315 1.48240 1.49917 1.22590 0.91989 1.08429 0.96547 1.29300 1.01799 1.03832 1.04120 1.81193 1.07967 1.40709 1.00532 1.78341 1.10972 1.24661 1.17611 1.71585 1.31074 1.13530 0.94436 1.88953 1.20480 1.63972 1.54882 0.94275 0.93358 0.92592 0.92240 0.93509 0.90406 0.90419 0.88420 0.87613 0.90643 0.87557 0.74753 0.75120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.19 13.70 21.65 0.30 -62.90 16 2 C -0.08 -4.91 5.50 84.86 0.47 -4.44 16 3 Si 1.10 54.70 25.13 68.60 1.72 56.42 16 4 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 5 H -0.27 -12.34 6.10 99.48 0.61 -11.73 16 6 H -0.27 -11.99 6.63 99.48 0.66 -11.33 16 7 C -0.29 -17.05 11.07 84.03 0.93 -16.12 16 8 H 0.06 3.53 8.05 -2.91 -0.02 3.50 16 9 N -0.65 -32.00 3.68 -740.40 -2.73 -34.73 16 10 C 0.10 4.39 5.28 83.58 0.44 4.84 16 11 C 0.08 2.82 1.39 -11.04 -0.02 2.81 16 12 C 0.11 4.22 8.18 83.48 0.68 4.90 16 13 C -0.12 -3.26 6.50 31.32 0.20 -3.06 16 14 C -0.13 -2.41 6.65 31.73 0.21 -2.20 16 15 C 0.06 1.21 3.35 31.12 0.10 1.31 16 16 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 17 C 0.13 2.43 5.28 86.38 0.46 2.89 16 18 N -0.70 -14.77 5.51 -466.34 -2.57 -17.34 16 19 C 0.60 13.59 7.81 86.67 0.68 14.27 16 20 O -0.55 -14.51 16.80 -4.06 -0.07 -14.58 16 21 C -0.05 -0.92 6.87 41.36 0.28 -0.64 16 22 C -0.23 -2.72 11.21 67.76 0.76 -1.96 16 23 S 0.56 4.93 23.38 -56.49 -1.32 3.60 16 24 N -0.34 -6.39 12.49 37.02 0.46 -5.93 16 25 N -0.24 -5.24 11.24 -50.34 -0.57 -5.80 16 26 O -0.36 -10.76 11.12 -148.98 -1.66 -12.41 16 27 H 0.25 16.19 8.73 -92.70 -0.81 15.38 16 28 H 0.05 2.12 7.67 -2.39 -0.02 2.10 16 29 H 0.06 2.40 4.69 -2.39 -0.01 2.38 16 30 H 0.06 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.18 8.11 -2.39 -0.02 2.16 16 33 H 0.08 2.29 7.92 -2.39 -0.02 2.27 16 34 H 0.10 1.47 7.87 -2.39 -0.02 1.45 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.42 8.92 8.06 -92.71 -0.75 8.17 16 39 H 0.23 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -78.66 339.94 -1.06 -79.72 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.17 Total: 11.36 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 5.20 Total: 2.59 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -5.10 Total: -126.70 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.72 Total: -26.99 kcal Atomic # 14 Polarization: 54.70 SS G_CDS: 1.72 Total: 56.42 kcal Atomic # 16 Polarization: 4.93 SS G_CDS: -1.32 Total: 3.60 kcal Total: -78.66 -1.06 -79.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053634402.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.605 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds