Wall clock time and date at job start Tue Mar 31 2020 13:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34229 * 126.28141 * 2 1 4 4 H 0.97003 * 125.73961 * 359.97438 * 3 2 1 5 5 N 1.39934 * 108.52214 * 180.24237 * 3 2 1 6 6 C 1.30524 * 108.89112 * 359.75087 * 5 3 2 7 7 Cl 1.73602 * 126.00119 * 180.02562 * 6 5 3 8 8 C 1.38061 * 126.27691 * 179.81865 * 2 1 3 9 9 C 1.47382 * 126.43017 * 0.02562 * 8 2 1 10 10 O 1.21605 * 120.00245 * 269.71553 * 9 8 2 11 11 N 1.34782 * 120.00035 * 89.70895 * 9 8 2 12 12 C 1.47886 * 134.34021 * 180.02562 * 11 9 8 13 13 C 1.52376 * 85.59017 * 156.53633 * 12 11 9 14 14 C 1.47886 * 134.33901 * 0.03364 * 11 9 8 15 15 C 1.53876 * 116.28084 * 264.17806 * 13 12 11 16 16 C 1.54601 * 102.63063 * 264.38118 * 15 13 12 17 17 N 1.47136 * 107.47544 * 339.39360 * 16 15 13 18 18 C 1.36938 * 125.58219 * 178.97076 * 17 16 15 19 19 H 1.08003 * 120.00338 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00180 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00169 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47243 * 60.00405 * 22 20 18 24 24 H 1.48502 * 109.47051 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47278 * 300.00049 * 22 20 18 26 26 C 1.47720 * 108.83064 * 359.00447 * 17 16 15 27 27 H 1.08992 * 109.47356 * 270.18290 * 1 2 3 28 28 H 1.09000 * 109.46894 * 30.18242 * 1 2 3 29 29 H 1.08998 * 109.47098 * 150.17802 * 1 2 3 30 30 H 1.08997 * 113.85873 * 42.36391 * 12 11 9 31 31 H 1.09005 * 113.96416 * 270.71096 * 12 11 9 32 32 H 1.08998 * 113.85229 * 89.30388 * 14 11 9 33 33 H 1.09003 * 113.85792 * 317.62809 * 14 11 9 34 34 H 1.08999 * 110.74128 * 146.13290 * 15 13 12 35 35 H 1.09004 * 110.87990 * 22.69324 * 15 13 12 36 36 H 1.09002 * 109.86948 * 219.87830 * 16 15 13 37 37 H 1.08999 * 109.86727 * 98.90432 * 16 15 13 38 38 H 0.97000 * 119.99735 * 179.97438 * 21 20 18 39 39 H 1.08992 * 110.40138 * 141.24798 * 26 17 16 40 40 H 1.09001 * 110.40009 * 263.54912 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3014 1.0820 0.0000 4 1 2.0019 2.0047 -0.0004 5 7 3.6340 0.6552 -0.0056 6 6 3.6598 -0.6498 -0.0036 7 17 5.0841 -1.6422 -0.0081 8 6 2.3239 -1.1130 0.0035 9 6 1.8858 -2.5202 0.0074 10 8 1.7097 -3.0993 1.0622 11 7 1.6803 -3.1653 -1.1580 12 6 1.2523 -4.5336 -1.5204 13 6 0.8056 -3.9176 -2.8406 14 6 1.7931 -2.7863 -2.5830 15 6 -0.6779 -3.5214 -2.9402 16 6 -1.3115 -4.7535 -3.6264 17 7 -0.2314 -5.4836 -4.3083 18 6 -0.3791 -6.6462 -5.0167 19 1 0.4792 -7.1075 -5.4826 20 6 -1.6319 -7.2318 -5.1361 21 7 -2.6780 -6.6695 -4.5688 22 14 -1.8335 -8.8174 -6.1030 23 1 -0.9974 -9.8807 -5.4901 24 1 -3.2589 -9.2332 -6.0804 25 1 -1.4045 -8.5985 -7.5077 26 6 1.0386 -4.7576 -4.1029 27 1 -0.3633 0.0033 1.0276 28 1 -0.3633 0.8884 -0.5167 29 1 -0.3633 -0.8916 -0.5111 30 1 0.4322 -4.9148 -0.9120 31 1 2.0741 -5.2427 -1.6206 32 1 2.7819 -2.9590 -3.0080 33 1 1.3974 -1.7960 -2.8085 34 1 -0.7990 -2.6309 -3.5569 35 1 -1.1063 -3.3678 -1.9498 36 1 -2.0566 -4.4303 -4.3533 37 1 -1.7777 -5.3950 -2.8786 38 1 -3.5536 -7.0786 -4.6526 39 1 1.8569 -5.4603 -3.9460 40 1 1.2503 -4.1134 -4.9563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072804051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:53 Heat of formation + Delta-G solvation = 100.652804 kcal Electronic energy + Delta-G solvation = -25364.026570 eV Core-core repulsion = 21629.613768 eV Total energy + Delta-G solvation = -3734.412801 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.81200 -40.33834 -37.99933 -37.06620 -35.56670 -33.01748 -32.26216 -31.59042 -29.48847 -28.68326 -27.72145 -26.17084 -25.64649 -23.74927 -22.25075 -22.05493 -20.28873 -19.16305 -18.32787 -17.85039 -16.84336 -16.45755 -15.96455 -15.53367 -15.40704 -15.30839 -14.74156 -14.37368 -14.05533 -13.73505 -13.47130 -13.11464 -13.08219 -12.68128 -12.36638 -12.32303 -12.22197 -11.97137 -11.90799 -11.78470 -11.07886 -11.01969 -10.92598 -10.71169 -10.45069 -10.21163 -10.13908 -9.89168 -9.76406 -9.74306 -9.56703 -9.03371 -8.60233 -8.50786 -6.84574 -5.71992 -3.05498 1.18614 1.21493 1.89666 2.52129 2.63062 3.06706 3.40800 3.45385 3.46274 4.16925 4.44065 4.47020 4.55631 4.68704 4.83740 4.99805 5.08833 5.25943 5.38644 5.41013 5.48993 5.54226 5.55407 5.64455 5.67457 5.82697 5.93817 6.03208 6.19180 6.21851 6.45457 6.48653 6.63051 6.65564 6.69480 6.94955 7.54305 7.59814 7.81171 7.82587 8.24429 8.25600 9.20995 9.81113 10.46349 11.39539 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.003074 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.404365 B = 9106.701091 C = 9641.750176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.144 3.856 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.278 5.278 6 C 0.160 3.840 7 Cl 0.020 6.980 8 C -0.260 4.260 9 C 0.615 3.385 10 O -0.535 6.535 11 N -0.629 5.629 12 C 0.133 3.867 13 C -0.104 4.104 14 C 0.118 3.882 15 C -0.118 4.118 16 C 0.179 3.821 17 N -0.604 5.604 18 C -0.229 4.229 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.151 3.849 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.252 0.748 39 H 0.042 0.958 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.572 16.793 7.588 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 N -0.158 5.158 4 H 0.294 0.706 5 N -0.104 5.104 6 C -0.032 4.032 7 Cl 0.048 6.952 8 C -0.275 4.275 9 C 0.402 3.598 10 O -0.411 6.411 11 N -0.364 5.364 12 C 0.012 3.988 13 C -0.106 4.106 14 C -0.005 4.005 15 C -0.157 4.157 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.024 3.976 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 9.166 17.360 8.285 21.308 hybrid contribution -0.449 -1.030 -0.531 1.242 sum 8.717 16.330 7.754 20.069 Atomic orbital electron populations 1.20655 0.85486 1.05163 1.04665 1.21442 0.94935 0.85883 0.96520 1.45816 1.02989 1.08630 1.58357 0.70584 1.77135 0.96598 1.10660 1.25978 1.22530 0.88748 0.90454 1.01485 1.98423 1.35230 1.64822 1.96731 1.19769 0.91052 0.94476 1.22203 1.16707 0.76566 0.84095 0.82472 1.90797 1.51790 1.68133 1.30406 1.50208 1.66336 1.14901 1.04947 1.22979 0.98911 0.83928 0.93015 1.22508 0.96482 0.95505 0.96105 1.23043 0.99566 0.99278 0.78599 1.22566 0.92380 1.00271 1.00438 1.21207 0.89830 0.88527 0.95001 1.44515 1.01860 1.25454 1.61258 1.19000 0.93903 0.97852 1.24967 0.90461 1.24785 0.95630 0.99167 1.00735 1.69945 0.98848 1.40048 1.48101 0.86212 0.76765 0.83149 0.79688 1.21154 1.21653 1.21217 1.21214 0.90782 0.93265 0.92317 0.88868 0.89849 0.88564 0.89664 0.89525 0.89566 0.90386 0.91966 0.92005 0.93880 0.93488 0.93720 0.93955 0.95706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 10.25 36.01 0.37 -0.33 16 2 C 0.14 1.41 7.29 -81.61 -0.60 0.82 16 3 N -0.45 -3.81 7.28 33.86 0.25 -3.56 16 4 H 0.45 1.99 8.96 -182.72 -1.64 0.36 16 5 N -0.28 -3.29 12.64 33.18 0.42 -2.87 16 6 C 0.16 2.09 7.89 -16.91 -0.13 1.95 16 7 Cl 0.02 0.25 29.19 -51.86 -1.51 -1.27 16 8 C -0.26 -3.41 5.62 -105.04 -0.59 -4.00 16 9 C 0.61 9.58 7.40 -12.54 -0.09 9.49 16 10 O -0.53 -10.29 17.83 5.27 0.09 -10.19 16 11 N -0.63 -9.09 3.62 -188.20 -0.68 -9.78 16 12 C 0.13 2.08 8.14 -3.60 -0.03 2.05 16 13 C -0.10 -1.61 0.99 -154.73 -0.15 -1.77 16 14 C 0.12 1.48 7.97 -3.61 -0.03 1.45 16 15 C -0.12 -1.98 6.35 -25.43 -0.16 -2.14 16 16 C 0.18 4.07 5.39 -2.85 -0.02 4.05 16 17 N -0.60 -14.50 3.41 -170.51 -0.58 -15.08 16 18 C -0.23 -6.13 10.28 -15.06 -0.15 -6.29 16 19 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -26.33 10.30 55.49 0.57 -25.76 16 22 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 26 C 0.15 2.81 6.66 -3.17 -0.02 2.78 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.81 7.96 -51.93 -0.41 0.39 16 30 H 0.08 1.45 8.12 -51.93 -0.42 1.02 16 31 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.98 8.07 -51.93 -0.42 0.56 16 36 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 37 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -33.48 353.84 -9.42 -42.90 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -6.58 Total: -4.12 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.70 Total: 7.78 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.02 Total: -57.04 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.51 Total: -1.27 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.48 -9.42 -42.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072804051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.549 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds