Wall clock time and date at job start Tue Mar 31 2020 13:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34229 * 126.28141 * 2 1 4 4 H 0.97003 * 125.73961 * 359.97438 * 3 2 1 5 5 N 1.39934 * 108.52214 * 180.24237 * 3 2 1 6 6 C 1.30524 * 108.89112 * 359.75087 * 5 3 2 7 7 Cl 1.73602 * 126.00119 * 180.02562 * 6 5 3 8 8 C 1.38061 * 126.27691 * 179.81865 * 2 1 3 9 9 C 1.47382 * 126.43017 * 0.02562 * 8 2 1 10 10 O 1.21605 * 120.00245 * 269.71553 * 9 8 2 11 11 N 1.34782 * 120.00035 * 89.70895 * 9 8 2 12 12 C 1.47886 * 134.34021 * 180.02562 * 11 9 8 13 13 C 1.52376 * 85.59017 * 156.53633 * 12 11 9 14 14 C 1.47886 * 134.33901 * 0.03364 * 11 9 8 15 15 C 1.53876 * 116.28084 * 264.17806 * 13 12 11 16 16 C 1.54601 * 102.63063 * 264.38118 * 15 13 12 17 17 N 1.47136 * 107.47544 * 339.39360 * 16 15 13 18 18 C 1.36938 * 125.58219 * 178.97076 * 17 16 15 19 19 H 1.08003 * 120.00338 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00180 * 0.02562 * 18 17 16 21 21 N 1.31619 * 120.00169 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47243 * 60.00405 * 22 20 18 24 24 H 1.48502 * 109.47051 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47278 * 300.00049 * 22 20 18 26 26 C 1.47720 * 108.83064 * 359.00447 * 17 16 15 27 27 H 1.08992 * 109.47356 * 270.18290 * 1 2 3 28 28 H 1.09000 * 109.46894 * 30.18242 * 1 2 3 29 29 H 1.08998 * 109.47098 * 150.17802 * 1 2 3 30 30 H 1.08997 * 113.85873 * 42.36391 * 12 11 9 31 31 H 1.09005 * 113.96416 * 270.71096 * 12 11 9 32 32 H 1.08998 * 113.85229 * 89.30388 * 14 11 9 33 33 H 1.09003 * 113.85792 * 317.62809 * 14 11 9 34 34 H 1.08999 * 110.74128 * 146.13290 * 15 13 12 35 35 H 1.09004 * 110.87990 * 22.69324 * 15 13 12 36 36 H 1.09002 * 109.86948 * 219.87830 * 16 15 13 37 37 H 1.08999 * 109.86727 * 98.90432 * 16 15 13 38 38 H 0.97000 * 119.99735 * 179.97438 * 21 20 18 39 39 H 1.08992 * 110.40138 * 141.24798 * 26 17 16 40 40 H 1.09001 * 110.40009 * 263.54912 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3014 1.0820 0.0000 4 1 2.0019 2.0047 -0.0004 5 7 3.6340 0.6552 -0.0056 6 6 3.6598 -0.6498 -0.0036 7 17 5.0841 -1.6422 -0.0081 8 6 2.3239 -1.1130 0.0035 9 6 1.8858 -2.5202 0.0074 10 8 1.7097 -3.0993 1.0622 11 7 1.6803 -3.1653 -1.1580 12 6 1.2523 -4.5336 -1.5204 13 6 0.8056 -3.9176 -2.8406 14 6 1.7931 -2.7863 -2.5830 15 6 -0.6779 -3.5214 -2.9402 16 6 -1.3115 -4.7535 -3.6264 17 7 -0.2314 -5.4836 -4.3083 18 6 -0.3791 -6.6462 -5.0167 19 1 0.4792 -7.1075 -5.4826 20 6 -1.6319 -7.2318 -5.1361 21 7 -2.6780 -6.6695 -4.5688 22 14 -1.8335 -8.8174 -6.1030 23 1 -0.9974 -9.8807 -5.4901 24 1 -3.2589 -9.2332 -6.0804 25 1 -1.4045 -8.5985 -7.5077 26 6 1.0386 -4.7576 -4.1029 27 1 -0.3633 0.0033 1.0276 28 1 -0.3633 0.8884 -0.5167 29 1 -0.3633 -0.8916 -0.5111 30 1 0.4322 -4.9148 -0.9120 31 1 2.0741 -5.2427 -1.6206 32 1 2.7819 -2.9590 -3.0080 33 1 1.3974 -1.7960 -2.8085 34 1 -0.7990 -2.6309 -3.5569 35 1 -1.1063 -3.3678 -1.9498 36 1 -2.0566 -4.4303 -4.3533 37 1 -1.7777 -5.3950 -2.8786 38 1 -3.5536 -7.0786 -4.6526 39 1 1.8569 -5.4603 -3.9460 40 1 1.2503 -4.1134 -4.9563 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072804051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:52 Heat of formation + Delta-G solvation = 77.770911 kcal Electronic energy + Delta-G solvation = -25365.018803 eV Core-core repulsion = 21629.613768 eV Total energy + Delta-G solvation = -3735.405035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.67236 -41.57343 -39.31723 -37.97006 -37.17817 -34.05755 -33.75191 -32.59218 -31.09592 -30.09219 -28.59541 -27.30207 -27.22843 -25.40797 -23.09017 -23.06237 -22.07086 -20.24575 -19.64876 -18.77495 -18.56440 -17.67782 -17.08421 -16.67152 -16.50150 -16.35720 -16.28564 -15.86058 -15.52231 -15.03840 -14.31539 -14.12575 -14.07881 -13.96670 -13.70397 -13.62715 -13.31729 -13.25573 -13.02322 -12.86937 -12.80488 -12.73468 -12.29992 -12.05333 -11.98199 -11.83550 -11.73604 -11.63945 -11.27528 -10.92861 -10.62808 -10.57437 -9.91588 -9.70953 -8.81105 -7.78780 -5.12799 0.33582 0.43227 0.96272 1.44368 1.49988 1.52311 1.58229 1.73638 2.05015 2.54421 3.31534 3.36116 3.46379 3.57461 3.67876 3.80467 3.89285 4.06022 4.14937 4.25236 4.41360 4.57637 4.59645 4.61485 4.70009 4.73914 4.76053 4.87821 4.90610 4.99275 5.08655 5.09914 5.23120 5.25749 5.53012 5.74806 5.85421 5.95992 6.23045 6.26585 6.67783 7.07818 7.17377 7.85340 8.48751 9.31187 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.003074 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.404365 B = 9106.701091 C = 9641.750176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.167 3.833 3 N -0.425 5.425 4 H 0.467 0.533 5 N -0.292 5.292 6 C 0.150 3.850 7 Cl 0.015 6.985 8 C -0.293 4.293 9 C 0.619 3.381 10 O -0.581 6.581 11 N -0.626 5.626 12 C 0.126 3.874 13 C -0.094 4.094 14 C 0.134 3.866 15 C -0.100 4.100 16 C 0.187 3.813 17 N -0.627 5.627 18 C -0.237 4.237 19 H 0.084 0.916 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.973 3.027 23 H -0.279 1.279 24 H -0.298 1.298 25 H -0.277 1.277 26 C 0.148 3.852 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.007 0.993 37 H 0.005 0.995 38 H 0.244 0.756 39 H 0.048 0.952 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.582 19.104 7.093 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.033 3.967 3 N -0.137 5.137 4 H 0.318 0.682 5 N -0.118 5.118 6 C -0.042 4.042 7 Cl 0.043 6.957 8 C -0.309 4.309 9 C 0.408 3.592 10 O -0.461 6.461 11 N -0.359 5.359 12 C 0.004 3.996 13 C -0.096 4.096 14 C 0.013 3.987 15 C -0.138 4.138 16 C 0.062 3.938 17 N -0.353 5.353 18 C -0.366 4.366 19 H 0.102 0.898 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.802 3.198 23 H -0.205 1.205 24 H -0.224 1.224 25 H -0.203 1.203 26 C 0.023 3.977 27 H 0.120 0.880 28 H 0.138 0.862 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.025 0.975 37 H 0.023 0.977 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.228 19.728 7.763 23.539 hybrid contribution -0.760 -1.707 -0.373 1.905 sum 9.468 18.021 7.390 21.657 Atomic orbital electron populations 1.20819 0.83224 1.06359 1.05620 1.21756 0.95972 0.85065 0.93903 1.45826 1.01805 1.09476 1.56635 0.68230 1.77087 0.98297 1.10078 1.26309 1.22586 0.88625 0.90832 1.02195 1.98414 1.35488 1.65068 1.96779 1.19644 0.91807 0.93807 1.25612 1.16992 0.75505 0.84899 0.81780 1.90767 1.53893 1.69418 1.32031 1.50189 1.65711 1.14225 1.05759 1.22964 0.98680 0.84987 0.92971 1.22335 0.96336 0.96474 0.94414 1.23115 0.99593 0.99160 0.76872 1.22370 0.92667 0.98154 1.00577 1.20933 0.89571 0.90059 0.93249 1.44816 1.04250 1.25319 1.60917 1.19419 0.94026 0.98771 1.24407 0.89834 1.25573 0.95641 1.02328 1.02358 1.70174 0.98828 1.41297 1.49743 0.85230 0.76090 0.79763 0.78718 1.20541 1.22447 1.20298 1.21408 0.88613 0.93549 0.94160 0.87973 0.86151 0.89792 0.91712 0.88917 0.87524 0.87745 0.89405 0.91063 0.97454 0.97665 0.94640 0.93383 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 10.25 71.24 0.73 -0.30 16 2 C 0.17 2.73 7.29 42.15 0.31 3.03 16 3 N -0.43 -5.74 7.28 -46.80 -0.34 -6.08 16 4 H 0.47 2.24 8.96 -213.42 -1.91 0.32 16 5 N -0.29 -6.17 12.64 -48.95 -0.62 -6.79 16 6 C 0.15 3.62 7.89 85.66 0.68 4.29 16 7 Cl 0.01 0.35 29.19 -2.72 -0.08 0.27 16 8 C -0.29 -7.10 5.62 -20.14 -0.11 -7.21 16 9 C 0.62 18.59 7.40 86.65 0.64 19.23 16 10 O -0.58 -22.43 17.83 -4.05 -0.07 -22.50 16 11 N -0.63 -16.98 3.62 -867.59 -3.14 -20.12 16 12 C 0.13 3.85 8.14 85.91 0.70 4.55 16 13 C -0.09 -2.72 0.99 -52.08 -0.05 -2.78 16 14 C 0.13 2.91 7.97 85.90 0.68 3.59 16 15 C -0.10 -3.20 6.35 31.43 0.20 -3.00 16 16 C 0.19 8.71 5.39 86.80 0.47 9.18 16 17 N -0.63 -30.22 3.41 -693.36 -2.36 -32.59 16 18 C -0.24 -12.81 10.28 84.03 0.86 -11.94 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 21 N -0.95 -56.36 10.30 21.65 0.22 -56.14 16 22 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 C 0.15 5.25 6.66 86.28 0.57 5.83 16 27 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.08 1.14 7.96 -2.39 -0.02 1.12 16 30 H 0.06 2.24 8.12 -2.39 -0.02 2.23 16 31 H 0.09 2.71 8.05 -2.38 -0.02 2.69 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.10 1.80 8.12 -2.39 -0.02 1.78 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 35 H 0.07 2.17 8.07 -2.38 -0.02 2.15 16 36 H 0.01 0.38 7.49 -2.39 -0.02 0.36 16 37 H 0.01 0.28 7.38 -2.39 -0.02 0.26 16 38 H 0.24 14.24 8.31 -92.71 -0.77 13.47 16 39 H 0.05 1.66 8.00 -2.39 -0.02 1.64 16 40 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.06 353.84 0.95 -75.11 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -0.83 Total: 0.39 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 6.14 Total: 21.25 kcal Atomic # 7 Polarization: -115.47 SS G_CDS: -6.24 Total: -121.71 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.07 Total: -22.50 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -76.06 0.95 -75.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072804051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.884 kcal (2) G-P(sol) polarization free energy of solvation -76.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds