Wall clock time and date at job start Tue Mar 31 2020 13:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47033 * 270.00149 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99938 * 3 2 1 6 6 H 1.48497 * 109.47270 * 150.00170 * 3 2 1 7 7 C 1.38811 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99977 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00364 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00064 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.89080 * 26.83707 * 10 9 7 12 12 C 1.53955 * 113.65978 * 255.48833 * 10 9 7 13 13 C 1.53954 * 87.29508 * 220.70039 * 12 10 9 14 14 H 1.08998 * 113.65483 * 139.30083 * 13 12 10 15 15 N 1.46492 * 113.66525 * 270.26304 * 13 12 10 16 16 C 1.34781 * 120.00439 * 255.49876 * 15 13 12 17 17 O 1.21743 * 119.99590 * 359.97438 * 16 15 13 18 18 C 1.46288 * 120.00338 * 179.72398 * 16 15 13 19 19 S 1.75820 * 125.46483 * 0.30063 * 18 16 15 20 20 C 1.70594 * 91.61042 * 179.97438 * 19 18 16 21 21 C 1.33742 * 111.03884 * 359.97438 * 20 19 18 22 22 C 1.36926 * 125.46451 * 179.97438 * 18 16 15 23 23 F 1.35101 * 123.40385 * 359.97211 * 22 18 16 24 24 C 1.52902 * 86.77984 * 24.73850 * 13 12 10 25 25 C 1.52914 * 121.13968 * 209.37818 * 24 13 12 26 26 C 1.53953 * 86.78394 * 209.37725 * 25 24 13 27 27 C 1.52913 * 121.14194 * 100.81606 * 24 13 12 28 28 H 0.96993 * 120.00309 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99637 * 359.97438 * 9 7 2 30 30 H 1.09003 * 113.57600 * 106.09999 * 12 10 9 31 31 H 1.08994 * 113.65047 * 335.31836 * 12 10 9 32 32 H 0.97000 * 120.00247 * 75.49446 * 15 13 12 33 33 H 1.08000 * 124.48695 * 180.02562 * 20 19 18 34 34 H 1.07992 * 122.45407 * 179.97438 * 21 20 19 35 35 H 1.09003 * 113.65851 * 323.84540 * 25 24 13 36 36 H 1.08994 * 113.66585 * 94.89870 * 25 24 13 37 37 H 1.08997 * 113.57900 * 270.13107 * 26 25 24 38 38 H 1.08998 * 113.64987 * 139.34797 * 26 25 24 39 39 H 1.09000 * 113.66098 * 265.09177 * 27 24 13 40 40 H 1.08997 * 113.66200 * 36.14559 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0458 -3.5756 0.4557 12 6 2.0622 -4.3690 -1.3632 13 6 1.8563 -5.6867 -0.5941 14 1 1.1498 -6.3658 -1.0713 15 7 3.1073 -6.3444 -0.2089 16 6 3.5317 -7.4324 -0.8818 17 8 2.8752 -7.8688 -1.8095 18 6 4.7841 -8.0856 -0.5010 19 16 5.8407 -7.5799 0.8101 20 6 6.9315 -8.8508 0.4855 21 6 6.5101 -9.5941 -0.5434 22 6 5.3182 -9.1925 -1.1045 23 9 4.7360 -9.8254 -2.1465 24 6 1.2398 -4.8399 0.5198 25 6 1.3212 -5.2772 1.9828 26 6 -0.0078 -4.5283 2.1904 27 6 -0.2765 -4.7386 0.6892 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 3.0192 -4.3120 -1.8819 31 1 1.2195 -4.0993 -1.9996 32 1 3.6303 -5.9970 0.5305 33 1 7.8415 -9.0319 1.0382 34 1 7.0624 -10.4485 -0.9057 35 1 1.2421 -6.3554 2.1221 36 1 2.1595 -4.8391 2.5244 37 1 0.1201 -3.4821 2.4680 38 1 -0.7099 -5.0547 2.8369 39 1 -0.7146 -3.8701 0.1973 40 1 -0.8046 -5.6654 0.4649 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078611182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:39 Heat of formation + Delta-G solvation = 13.721639 kcal Electronic energy + Delta-G solvation = -25003.792044 eV Core-core repulsion = 21247.733369 eV Total energy + Delta-G solvation = -3756.058675 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.04328 -40.65817 -39.06755 -37.51803 -35.03934 -34.07901 -32.40388 -30.40243 -29.50861 -25.63127 -25.40599 -24.51504 -24.14390 -22.60315 -21.53728 -20.16055 -20.02546 -19.00254 -17.95478 -17.30488 -16.73219 -16.25952 -16.07842 -15.64809 -15.17705 -14.92838 -14.75016 -14.61068 -14.39044 -14.01965 -13.73758 -13.45614 -12.86863 -12.62745 -12.49593 -12.23960 -12.02847 -11.78382 -11.70721 -11.51370 -11.36143 -10.90485 -10.83052 -10.63958 -10.20572 -10.18668 -10.03201 -9.86210 -9.66095 -9.42549 -9.35822 -8.86586 -8.85237 -8.72661 -6.98923 -5.81480 -3.10061 0.02928 0.95011 1.36425 1.83167 3.01483 3.05517 3.40771 3.46152 3.47591 3.94356 4.52245 4.54978 4.60244 4.75830 4.88441 4.99309 5.06263 5.20642 5.25645 5.28204 5.42807 5.43880 5.67744 5.81648 5.92391 5.93592 5.98737 6.03758 6.09205 6.14035 6.28637 6.39950 6.45387 6.55833 6.63507 6.85597 6.90648 7.03668 7.48012 7.66392 8.14822 8.37299 9.48973 10.05981 10.40986 11.40788 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.003216 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.956391 B = 8703.516967 C = 9249.703133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.191 3.809 11 H 0.074 0.926 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.097 0.903 15 N -0.696 5.696 16 C 0.590 3.410 17 O -0.522 6.522 18 C -0.312 4.312 19 S 0.260 5.740 20 C -0.212 4.212 21 C -0.178 4.178 22 C 0.160 3.840 23 F -0.104 7.104 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.131 4.131 27 C -0.110 4.110 28 H 0.256 0.744 29 H 0.388 0.612 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.397 0.603 33 H 0.180 0.820 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.767 -18.731 4.923 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.347 5.347 10 C 0.079 3.921 11 H 0.092 0.908 12 C -0.216 4.216 13 C 0.025 3.975 14 H 0.115 0.885 15 N -0.346 5.346 16 C 0.375 3.625 17 O -0.400 6.400 18 C -0.434 4.434 19 S 0.526 5.474 20 C -0.350 4.350 21 C -0.211 4.211 22 C 0.125 3.875 23 F -0.082 7.082 24 C -0.122 4.122 25 C -0.165 4.165 26 C -0.168 4.168 27 C -0.148 4.148 28 H 0.066 0.934 29 H 0.223 0.777 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.231 0.769 33 H 0.198 0.802 34 H 0.175 0.825 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.325 -17.687 5.307 21.662 hybrid contribution 0.571 -0.299 -0.992 1.183 sum 11.896 -17.986 4.315 21.992 Atomic orbital electron populations 1.69648 1.05100 1.25777 1.57357 1.24738 0.95489 0.97693 1.02747 0.86211 0.78654 0.83883 0.77547 1.21708 1.21794 1.20766 1.19270 0.91036 0.84164 1.43048 0.91180 1.42389 1.05919 0.99516 1.86873 1.21282 0.94053 0.84586 0.92203 0.90802 1.24290 1.01991 0.94976 1.00377 1.21769 0.84788 0.93532 0.97416 0.88455 1.45431 1.25086 1.28780 1.35281 1.16623 0.83097 0.80157 0.82577 1.90884 1.55979 1.64559 1.28563 1.24752 1.04857 1.05559 1.08201 1.83226 1.10725 1.26338 1.27095 1.25127 1.06036 1.01132 1.02697 1.19851 0.96904 1.04760 0.99545 1.16901 0.92107 0.91278 0.87210 1.91584 1.83203 1.79880 1.53532 1.23546 0.97560 0.97916 0.93170 1.22670 0.98667 0.99283 0.95919 1.22740 0.96504 1.01478 0.96092 1.22465 0.93547 1.01870 0.96896 0.93429 0.77652 0.92234 0.89378 0.76888 0.80246 0.82453 0.90858 0.91644 0.89145 0.92386 0.90163 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.71 -16.81 5.35 -52.99 -0.28 -17.09 16 10 C 0.19 3.60 4.27 -67.48 -0.29 3.31 16 11 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 12 C -0.17 -3.12 7.68 -25.74 -0.20 -3.32 16 13 C 0.13 2.03 4.08 -67.49 -0.28 1.76 16 14 H 0.10 1.62 7.54 -51.93 -0.39 1.23 16 15 N -0.70 -9.57 5.07 -54.80 -0.28 -9.84 16 16 C 0.59 8.93 7.77 -13.02 -0.10 8.83 16 17 O -0.52 -9.91 15.77 5.15 0.08 -9.83 16 18 C -0.31 -3.77 6.45 -36.82 -0.24 -4.01 16 19 S 0.26 2.00 22.14 -107.50 -2.38 -0.38 16 20 C -0.21 -1.33 10.91 29.16 0.32 -1.02 16 21 C -0.18 -1.44 10.15 -41.35 -0.42 -1.86 16 22 C 0.16 1.89 7.48 -40.25 -0.30 1.59 16 23 F -0.10 -1.48 16.42 2.25 0.04 -1.44 16 24 C -0.12 -1.87 0.91 -154.71 -0.14 -2.01 16 25 C -0.13 -1.75 7.43 -26.28 -0.20 -1.95 16 26 C -0.13 -1.96 8.08 -25.75 -0.21 -2.17 16 27 C -0.11 -1.73 7.45 -26.28 -0.20 -1.92 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.39 9.74 5.87 -40.82 -0.24 9.50 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.40 4.61 7.65 -40.82 -0.31 4.29 16 33 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.45 6.43 -51.93 -0.33 1.12 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 351.70 15.07 5.30 5.30 Total: -1.00 -31.97 351.70 -9.36 -41.33 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.05 Total: 11.49 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.49 Total: -9.81 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.16 Total: -53.52 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.38 Total: -0.38 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.97 -9.36 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.050 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds