Wall clock time and date at job start Tue Mar 31 2020 13:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47033 * 270.00149 * 3 2 1 5 5 H 1.48498 * 109.47211 * 29.99938 * 3 2 1 6 6 H 1.48497 * 109.47270 * 150.00170 * 3 2 1 7 7 C 1.38811 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99977 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00364 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00064 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.89080 * 26.83707 * 10 9 7 12 12 C 1.53955 * 113.65978 * 255.48833 * 10 9 7 13 13 C 1.53954 * 87.29508 * 220.70039 * 12 10 9 14 14 H 1.08998 * 113.65483 * 139.30083 * 13 12 10 15 15 N 1.46492 * 113.66525 * 270.26304 * 13 12 10 16 16 C 1.34781 * 120.00439 * 255.49876 * 15 13 12 17 17 O 1.21743 * 119.99590 * 359.97438 * 16 15 13 18 18 C 1.46288 * 120.00338 * 179.72398 * 16 15 13 19 19 S 1.75820 * 125.46483 * 0.30063 * 18 16 15 20 20 C 1.70594 * 91.61042 * 179.97438 * 19 18 16 21 21 C 1.33742 * 111.03884 * 359.97438 * 20 19 18 22 22 C 1.36926 * 125.46451 * 179.97438 * 18 16 15 23 23 F 1.35101 * 123.40385 * 359.97211 * 22 18 16 24 24 C 1.52902 * 86.77984 * 24.73850 * 13 12 10 25 25 C 1.52914 * 121.13968 * 209.37818 * 24 13 12 26 26 C 1.53953 * 86.78394 * 209.37725 * 25 24 13 27 27 C 1.52913 * 121.14194 * 100.81606 * 24 13 12 28 28 H 0.96993 * 120.00309 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99637 * 359.97438 * 9 7 2 30 30 H 1.09003 * 113.57600 * 106.09999 * 12 10 9 31 31 H 1.08994 * 113.65047 * 335.31836 * 12 10 9 32 32 H 0.97000 * 120.00247 * 75.49446 * 15 13 12 33 33 H 1.08000 * 124.48695 * 180.02562 * 20 19 18 34 34 H 1.07992 * 122.45407 * 179.97438 * 21 20 19 35 35 H 1.09003 * 113.65851 * 323.84540 * 25 24 13 36 36 H 1.08994 * 113.66585 * 94.89870 * 25 24 13 37 37 H 1.08997 * 113.57900 * 270.13107 * 26 25 24 38 38 H 1.08998 * 113.64987 * 139.34797 * 26 25 24 39 39 H 1.09000 * 113.66098 * 265.09177 * 27 24 13 40 40 H 1.08997 * 113.66200 * 36.14559 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 3.0458 -3.5756 0.4557 12 6 2.0622 -4.3690 -1.3632 13 6 1.8563 -5.6867 -0.5941 14 1 1.1498 -6.3658 -1.0713 15 7 3.1073 -6.3444 -0.2089 16 6 3.5317 -7.4324 -0.8818 17 8 2.8752 -7.8688 -1.8095 18 6 4.7841 -8.0856 -0.5010 19 16 5.8407 -7.5799 0.8101 20 6 6.9315 -8.8508 0.4855 21 6 6.5101 -9.5941 -0.5434 22 6 5.3182 -9.1925 -1.1045 23 9 4.7360 -9.8254 -2.1465 24 6 1.2398 -4.8399 0.5198 25 6 1.3212 -5.2772 1.9828 26 6 -0.0078 -4.5283 2.1904 27 6 -0.2765 -4.7386 0.6892 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0005 30 1 3.0192 -4.3120 -1.8819 31 1 1.2195 -4.0993 -1.9996 32 1 3.6303 -5.9970 0.5305 33 1 7.8415 -9.0319 1.0382 34 1 7.0624 -10.4485 -0.9057 35 1 1.2421 -6.3554 2.1221 36 1 2.1595 -4.8391 2.5244 37 1 0.1201 -3.4821 2.4680 38 1 -0.7099 -5.0547 2.8369 39 1 -0.7146 -3.8701 0.1973 40 1 -0.8046 -5.6654 0.4649 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078611182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:38 Heat of formation + Delta-G solvation = -6.639715 kcal Electronic energy + Delta-G solvation = -25004.674978 eV Core-core repulsion = 21247.733369 eV Total energy + Delta-G solvation = -3756.941609 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.99156 -41.98690 -40.24460 -38.26924 -36.38620 -35.80892 -33.93973 -31.95776 -30.64284 -26.84754 -26.66206 -25.90749 -25.48903 -24.00748 -22.76987 -21.45539 -20.87428 -19.96164 -19.58650 -18.69355 -17.88707 -17.43441 -17.02910 -16.76032 -16.67125 -16.36053 -15.86310 -15.78054 -15.50943 -15.26103 -14.98011 -14.73102 -14.24669 -13.96002 -13.57399 -13.41059 -13.33039 -13.17422 -12.96132 -12.86779 -12.77946 -12.48545 -12.15721 -12.14172 -11.93250 -11.85559 -11.40045 -11.31678 -11.06692 -10.92761 -10.69988 -10.21278 -9.89029 -9.50322 -8.95363 -7.92320 -5.19990 -0.72925 0.26349 0.74055 1.13198 1.48674 1.49995 1.57920 1.90193 1.95971 2.57724 3.24057 3.38319 3.44229 3.56946 3.69322 3.75620 3.89942 3.92823 4.01648 4.11179 4.25258 4.35870 4.55213 4.60797 4.70524 4.73035 4.82823 4.86794 4.88716 4.98639 5.06243 5.13787 5.15774 5.19633 5.21996 5.49779 5.56861 5.59960 5.64865 6.29487 6.36451 7.02812 7.36911 8.13224 8.37004 9.30862 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.003216 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.956391 B = 8703.516967 C = 9249.703133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.968 3.032 4 H -0.292 1.292 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.180 3.820 11 H 0.083 0.917 12 C -0.174 4.174 13 C 0.147 3.853 14 H 0.089 0.911 15 N -0.686 5.686 16 C 0.589 3.411 17 O -0.573 6.573 18 C -0.357 4.357 19 S 0.314 5.686 20 C -0.183 4.183 21 C -0.191 4.191 22 C 0.143 3.857 23 F -0.128 7.128 24 C -0.111 4.111 25 C -0.111 4.111 26 C -0.128 4.128 27 C -0.114 4.114 28 H 0.250 0.750 29 H 0.378 0.622 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.409 0.591 33 H 0.223 0.777 34 H 0.180 0.820 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.719 -20.194 7.096 25.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.798 3.202 4 H -0.220 1.220 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.070 3.930 11 H 0.100 0.900 12 C -0.216 4.216 13 C 0.041 3.959 14 H 0.107 0.893 15 N -0.336 5.336 16 C 0.377 3.623 17 O -0.454 6.454 18 C -0.478 4.478 19 S 0.580 5.420 20 C -0.321 4.321 21 C -0.221 4.221 22 C 0.107 3.893 23 F -0.106 7.106 24 C -0.113 4.113 25 C -0.148 4.148 26 C -0.166 4.166 27 C -0.152 4.152 28 H 0.059 0.941 29 H 0.212 0.788 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.246 0.754 33 H 0.240 0.760 34 H 0.198 0.802 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.341 -19.177 7.513 25.097 hybrid contribution -0.247 0.084 -1.653 1.673 sum 14.094 -19.094 5.860 24.445 Atomic orbital electron populations 1.69806 1.06567 1.25932 1.59590 1.25495 0.96264 1.00881 1.03876 0.85213 0.77922 0.79897 0.77172 1.21982 1.22454 1.19111 1.19675 0.91530 0.85268 1.40793 0.90485 1.42538 1.05655 1.00513 1.87101 1.21546 0.94659 0.83678 0.93111 0.89958 1.24162 1.01044 0.96664 0.99748 1.21447 0.85516 0.92312 0.96633 0.89340 1.45264 1.24443 1.28395 1.35458 1.17063 0.83745 0.79842 0.81680 1.90847 1.57859 1.65951 1.30742 1.24619 1.05127 1.06718 1.11384 1.83033 1.09080 1.25878 1.23989 1.25693 1.06295 0.98957 1.01128 1.20008 0.95813 1.06117 1.00160 1.17531 0.93424 0.91455 0.86900 1.91514 1.83885 1.80385 1.54837 1.23315 0.97245 0.95801 0.94907 1.22654 0.98128 1.00587 0.93472 1.22646 0.98088 1.00201 0.95653 1.22532 0.93532 1.01603 0.97494 0.94136 0.78826 0.92588 0.91279 0.75392 0.76015 0.80223 0.88353 0.90647 0.92210 0.89979 0.93245 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.46 13.06 21.65 0.28 -58.17 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 4 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 5 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.24 -12.96 9.98 84.03 0.84 -12.12 16 8 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -34.92 5.35 -321.56 -1.72 -36.64 16 10 C 0.18 6.79 4.27 45.29 0.19 6.99 16 11 H 0.08 2.95 8.12 -2.39 -0.02 2.93 16 12 C -0.17 -6.37 7.68 31.23 0.24 -6.13 16 13 C 0.15 4.56 4.08 45.28 0.18 4.74 16 14 H 0.09 2.98 7.54 -2.39 -0.02 2.96 16 15 N -0.69 -18.13 5.07 -445.49 -2.26 -20.39 16 16 C 0.59 17.74 7.77 86.33 0.67 18.41 16 17 O -0.57 -22.45 15.77 -4.49 -0.07 -22.52 16 18 C -0.36 -8.20 6.45 24.06 0.16 -8.04 16 19 S 0.31 3.70 22.14 -56.49 -1.25 2.45 16 20 C -0.18 -1.44 10.91 66.80 0.73 -0.71 16 21 C -0.19 -2.51 10.15 21.13 0.21 -2.29 16 22 C 0.14 3.25 7.48 21.84 0.16 3.42 16 23 F -0.13 -3.73 16.42 44.97 0.74 -2.99 16 24 C -0.11 -3.38 0.91 -52.31 -0.05 -3.43 16 25 C -0.11 -2.76 7.43 30.89 0.23 -2.53 16 26 C -0.13 -3.69 8.08 31.23 0.25 -3.44 16 27 C -0.11 -3.56 7.45 30.89 0.23 -3.33 16 28 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.38 19.76 5.87 -92.71 -0.54 19.22 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.41 8.62 7.65 -92.71 -0.71 7.91 16 33 H 0.22 -0.13 8.06 -2.91 -0.02 -0.15 16 34 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.86 6.43 -2.39 -0.02 1.85 16 40 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -73.20 351.70 2.11 -71.09 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.16 Total: 31.84 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 4.52 Total: -12.10 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -3.70 Total: -115.20 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.07 Total: -22.52 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.74 Total: -2.99 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.25 Total: 2.45 kcal Total: -73.20 2.11 -71.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.454 kcal (2) G-P(sol) polarization free energy of solvation -73.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds