Wall clock time and date at job start Tue Mar 31 2020 13:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48494 * 109.47365 * 270.00205 * 3 2 1 5 5 H 1.48500 * 109.47276 * 30.00511 * 3 2 1 6 6 H 1.48505 * 109.46908 * 150.00370 * 3 2 1 7 7 C 1.38817 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99327 * 0.02562 * 7 2 1 9 9 N 1.36928 * 120.00004 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99865 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.88292 * 336.34855 * 10 9 7 12 12 C 1.53949 * 113.74561 * 107.77218 * 10 9 7 13 13 C 1.53950 * 87.29535 * 139.21880 * 12 10 9 14 14 H 1.09008 * 113.74633 * 220.78601 * 13 12 10 15 15 N 1.46499 * 113.66341 * 89.73825 * 13 12 10 16 16 C 1.34777 * 119.99665 * 108.09210 * 15 13 12 17 17 O 1.21733 * 120.00174 * 359.72127 * 16 15 13 18 18 C 1.46294 * 119.99819 * 179.72463 * 16 15 13 19 19 S 1.75829 * 125.46142 * 0.02562 * 18 16 15 20 20 C 1.70599 * 91.60204 * 180.02562 * 19 18 16 21 21 C 1.33730 * 111.04450 * 359.97438 * 20 19 18 22 22 C 1.36917 * 125.46626 * 179.71685 * 18 16 15 23 23 F 1.35108 * 123.40527 * 359.97438 * 22 18 16 24 24 C 1.52909 * 86.78227 * 335.26395 * 13 12 10 25 25 C 1.52907 * 121.14177 * 259.18037 * 24 13 12 26 26 C 1.53951 * 86.78403 * 209.38090 * 25 24 13 27 27 C 1.52906 * 121.13749 * 150.61521 * 24 13 12 28 28 H 0.97002 * 119.99866 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00652 * 0.02562 * 9 7 2 30 30 H 1.09002 * 113.58121 * 24.61574 * 12 10 9 31 31 H 1.08996 * 113.57817 * 253.81785 * 12 10 9 32 32 H 0.97001 * 119.99790 * 287.80923 * 15 13 12 33 33 H 1.08008 * 124.47756 * 180.02562 * 20 19 18 34 34 H 1.07999 * 122.45759 * 180.02562 * 21 20 19 35 35 H 1.08997 * 113.66251 * 323.85149 * 25 24 13 36 36 H 1.09002 * 113.66158 * 94.90664 * 25 24 13 37 37 H 1.09004 * 113.57480 * 270.12852 * 26 25 24 38 38 H 1.09001 * 113.64943 * 139.34808 * 26 25 24 39 39 H 1.09002 * 113.66647 * 265.09510 * 27 24 13 40 40 H 1.08999 * 113.66159 * 36.15332 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.5277 -3.2977 0.4022 12 6 4.7941 -2.7930 -1.3432 13 6 5.9996 -3.2939 -0.5271 14 1 6.9637 -3.0080 -0.9477 15 7 5.9270 -4.7163 -0.1838 16 6 6.7424 -5.5992 -0.7938 17 8 7.5357 -5.2154 -1.6336 18 6 6.6741 -7.0187 -0.4466 19 16 5.5870 -7.7275 0.7396 20 6 6.2113 -9.2885 0.4497 21 6 7.1714 -9.2565 -0.4806 22 6 7.4423 -8.0091 -0.9976 23 9 8.3748 -7.7848 -1.9492 24 6 5.5185 -2.3675 0.5903 25 6 6.1777 -1.0088 0.8297 26 6 5.7878 -1.1775 2.3094 27 6 5.7845 -2.6966 2.0596 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 5.0114 -1.9104 -1.9448 31 1 4.2938 -3.5788 -1.9089 32 1 5.2949 -5.0220 0.4855 33 1 5.8749 -10.1843 0.9507 34 1 7.6929 -10.1445 -0.8061 35 1 7.2541 -1.0085 0.6582 36 1 5.6682 -0.1821 0.3345 37 1 4.8047 -0.7730 2.5501 38 1 6.5611 -0.8517 3.0052 39 1 4.9609 -3.2183 2.5472 40 1 6.7504 -3.1707 2.2338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078611184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:44 Heat of formation + Delta-G solvation = 17.761912 kcal Electronic energy + Delta-G solvation = -25078.314447 eV Core-core repulsion = 21322.430972 eV Total energy + Delta-G solvation = -3755.883475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.06430 -40.78498 -39.14545 -37.54560 -35.16804 -34.21400 -32.44394 -30.72611 -29.79853 -25.72210 -25.55683 -24.56920 -24.25644 -22.42788 -21.49311 -20.28234 -20.04855 -19.04990 -18.40219 -17.45904 -16.84303 -16.30264 -16.10710 -15.72331 -15.21324 -14.99261 -14.87472 -14.64593 -14.46343 -14.20537 -13.79875 -13.25766 -12.91919 -12.67980 -12.56487 -12.30907 -12.20417 -12.09380 -11.95789 -11.56979 -11.51810 -11.03441 -10.97132 -10.75169 -10.29631 -10.21752 -10.00689 -9.99139 -9.72861 -9.51580 -9.38149 -8.91190 -8.87144 -8.80240 -7.31391 -5.82730 -3.18319 0.01039 0.93594 1.35026 1.81398 2.96832 2.99630 3.32907 3.36245 3.42077 3.92558 4.49516 4.53763 4.56333 4.62947 4.84548 4.87094 4.91684 5.08883 5.09253 5.26115 5.30434 5.41342 5.49931 5.61484 5.78478 5.87272 5.89375 5.90420 5.94863 5.99587 6.15634 6.24845 6.29514 6.35341 6.52491 6.69028 6.74650 6.88033 7.41843 7.93318 8.09321 8.36950 9.14553 9.87031 10.06956 11.35390 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.003223 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.949411 B = 8685.598224 C = 9009.964760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.732 5.732 10 C 0.198 3.802 11 H 0.084 0.916 12 C -0.174 4.174 13 C 0.131 3.869 14 H 0.100 0.900 15 N -0.697 5.697 16 C 0.591 3.409 17 O -0.523 6.523 18 C -0.314 4.314 19 S 0.262 5.738 20 C -0.211 4.211 21 C -0.179 4.179 22 C 0.161 3.839 23 F -0.104 7.104 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.134 4.134 27 C -0.125 4.125 28 H 0.260 0.740 29 H 0.364 0.636 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.181 0.819 34 H 0.158 0.842 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.601 -17.533 4.668 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.372 5.372 10 C 0.086 3.914 11 H 0.102 0.898 12 C -0.216 4.216 13 C 0.026 3.974 14 H 0.118 0.882 15 N -0.346 5.346 16 C 0.377 3.623 17 O -0.400 6.400 18 C -0.436 4.436 19 S 0.528 5.472 20 C -0.349 4.349 21 C -0.211 4.211 22 C 0.126 3.874 23 F -0.082 7.082 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.171 4.171 27 C -0.163 4.163 28 H 0.070 0.930 29 H 0.199 0.801 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.198 0.802 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.782 -16.688 5.004 22.214 hybrid contribution 1.489 0.323 -0.890 1.765 sum 15.271 -16.364 4.113 22.758 Atomic orbital electron populations 1.69697 1.05119 1.25893 1.57173 1.24670 0.95203 0.97166 1.01813 0.86630 0.79329 0.85134 0.77931 1.21004 1.21676 1.20119 1.19109 0.80588 0.94743 1.43362 0.89142 1.42731 1.03965 1.01972 1.88535 1.21277 0.87953 0.90108 0.92073 0.89770 1.24255 0.96477 1.01024 0.99874 1.21736 1.00108 0.78287 0.97253 0.88175 1.45411 1.39173 1.07544 1.42515 1.16617 0.81039 0.83126 0.81505 1.90879 1.37945 1.78815 1.32394 1.24730 1.09494 0.98599 1.10731 1.83257 1.33414 0.96203 1.34290 1.25137 1.01991 1.04275 1.03498 1.19849 1.02491 0.97691 1.01081 1.16901 0.89170 0.92068 0.89280 1.91585 1.61457 1.95134 1.60042 1.23635 0.99470 0.96252 0.93482 1.22483 0.99556 0.95937 0.96942 1.22764 1.02112 0.96266 0.95952 1.22642 1.01122 0.96939 0.95566 0.92997 0.80112 0.89454 0.91676 0.76762 0.80211 0.82441 0.90276 0.91050 0.89348 0.92145 0.91328 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 21.54 27.74 -169.99 -4.71 16.82 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.25 -6.70 10.45 -15.06 -0.16 -6.86 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 N -0.73 -16.33 5.13 -52.99 -0.27 -16.60 16 10 C 0.20 3.55 4.27 -67.48 -0.29 3.26 16 11 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 12 C -0.17 -2.93 7.69 -25.75 -0.20 -3.13 16 13 C 0.13 1.93 4.13 -67.48 -0.28 1.66 16 14 H 0.10 1.57 7.46 -51.92 -0.39 1.18 16 15 N -0.70 -9.14 5.04 -54.79 -0.28 -9.42 16 16 C 0.59 8.64 7.77 -13.02 -0.10 8.54 16 17 O -0.52 -9.60 15.73 5.16 0.08 -9.52 16 18 C -0.31 -3.69 6.45 -36.82 -0.24 -3.92 16 19 S 0.26 1.97 22.14 -107.50 -2.38 -0.41 16 20 C -0.21 -1.30 10.91 29.15 0.32 -0.98 16 21 C -0.18 -1.41 10.15 -41.35 -0.42 -1.83 16 22 C 0.16 1.86 7.48 -40.25 -0.30 1.56 16 23 F -0.10 -1.45 16.43 2.25 0.04 -1.41 16 24 C -0.13 -1.86 0.92 -154.71 -0.14 -2.00 16 25 C -0.11 -1.62 7.47 -26.28 -0.20 -1.81 16 26 C -0.13 -1.87 8.08 -25.75 -0.21 -2.08 16 27 C -0.13 -1.62 7.49 -26.29 -0.20 -1.82 16 28 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.36 8.05 3.78 -40.82 -0.15 7.90 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.40 4.42 7.72 -40.82 -0.32 4.10 16 33 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 34 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.16 6.42 -51.93 -0.33 0.83 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -32.95 348.62 -9.01 -41.96 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.01 Total: 10.46 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.50 Total: -9.30 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: 0.23 Total: -53.85 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.38 Total: -0.41 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.95 -9.01 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.722 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds