Wall clock time and date at job start Tue Mar 31 2020 13:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48494 * 109.47365 * 270.00205 * 3 2 1 5 5 H 1.48500 * 109.47276 * 30.00511 * 3 2 1 6 6 H 1.48505 * 109.46908 * 150.00370 * 3 2 1 7 7 C 1.38817 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99327 * 0.02562 * 7 2 1 9 9 N 1.36928 * 120.00004 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99865 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.88292 * 336.34855 * 10 9 7 12 12 C 1.53949 * 113.74561 * 107.77218 * 10 9 7 13 13 C 1.53950 * 87.29535 * 139.21880 * 12 10 9 14 14 H 1.09008 * 113.74633 * 220.78601 * 13 12 10 15 15 N 1.46499 * 113.66341 * 89.73825 * 13 12 10 16 16 C 1.34777 * 119.99665 * 108.09210 * 15 13 12 17 17 O 1.21733 * 120.00174 * 359.72127 * 16 15 13 18 18 C 1.46294 * 119.99819 * 179.72463 * 16 15 13 19 19 S 1.75829 * 125.46142 * 0.02562 * 18 16 15 20 20 C 1.70599 * 91.60204 * 180.02562 * 19 18 16 21 21 C 1.33730 * 111.04450 * 359.97438 * 20 19 18 22 22 C 1.36917 * 125.46626 * 179.71685 * 18 16 15 23 23 F 1.35108 * 123.40527 * 359.97438 * 22 18 16 24 24 C 1.52909 * 86.78227 * 335.26395 * 13 12 10 25 25 C 1.52907 * 121.14177 * 259.18037 * 24 13 12 26 26 C 1.53951 * 86.78403 * 209.38090 * 25 24 13 27 27 C 1.52906 * 121.13749 * 150.61521 * 24 13 12 28 28 H 0.97002 * 119.99866 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00652 * 0.02562 * 9 7 2 30 30 H 1.09002 * 113.58121 * 24.61574 * 12 10 9 31 31 H 1.08996 * 113.57817 * 253.81785 * 12 10 9 32 32 H 0.97001 * 119.99790 * 287.80923 * 15 13 12 33 33 H 1.08008 * 124.47756 * 180.02562 * 20 19 18 34 34 H 1.07999 * 122.45759 * 180.02562 * 21 20 19 35 35 H 1.08997 * 113.66251 * 323.85149 * 25 24 13 36 36 H 1.09002 * 113.66158 * 94.90664 * 25 24 13 37 37 H 1.09004 * 113.57480 * 270.12852 * 26 25 24 38 38 H 1.09001 * 113.64943 * 139.34808 * 26 25 24 39 39 H 1.09002 * 113.66647 * 265.09510 * 27 24 13 40 40 H 1.08999 * 113.66159 * 36.15332 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.5277 -3.2977 0.4022 12 6 4.7941 -2.7930 -1.3432 13 6 5.9996 -3.2939 -0.5271 14 1 6.9637 -3.0080 -0.9477 15 7 5.9270 -4.7163 -0.1838 16 6 6.7424 -5.5992 -0.7938 17 8 7.5357 -5.2154 -1.6336 18 6 6.6741 -7.0187 -0.4466 19 16 5.5870 -7.7275 0.7396 20 6 6.2113 -9.2885 0.4497 21 6 7.1714 -9.2565 -0.4806 22 6 7.4423 -8.0091 -0.9976 23 9 8.3748 -7.7848 -1.9492 24 6 5.5185 -2.3675 0.5903 25 6 6.1777 -1.0088 0.8297 26 6 5.7878 -1.1775 2.3094 27 6 5.7845 -2.6966 2.0596 28 1 -0.4850 0.8401 0.0004 29 1 3.8647 -0.3621 -0.0007 30 1 5.0114 -1.9104 -1.9448 31 1 4.2938 -3.5788 -1.9089 32 1 5.2949 -5.0220 0.4855 33 1 5.8749 -10.1843 0.9507 34 1 7.6929 -10.1445 -0.8061 35 1 7.2541 -1.0085 0.6582 36 1 5.6682 -0.1821 0.3345 37 1 4.8047 -0.7730 2.5501 38 1 6.5611 -0.8517 3.0052 39 1 4.9609 -3.2183 2.5472 40 1 6.7504 -3.1707 2.2338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078611184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:44 Heat of formation + Delta-G solvation = -3.808263 kcal Electronic energy + Delta-G solvation = -25079.249800 eV Core-core repulsion = 21322.430972 eV Total energy + Delta-G solvation = -3756.818828 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.99364 -42.04027 -40.27141 -38.27643 -36.45234 -35.90185 -33.99863 -32.47459 -30.73424 -26.87675 -26.74856 -25.83105 -25.51868 -23.81039 -22.77175 -21.49067 -20.88200 -20.23834 -19.91134 -18.73415 -17.89267 -17.45270 -17.03527 -16.75992 -16.64636 -16.55513 -15.88246 -15.83702 -15.60829 -15.11475 -14.89851 -14.69181 -14.33538 -14.13446 -13.94786 -13.51786 -13.42682 -13.21398 -12.98307 -12.96425 -12.81679 -12.52568 -12.17299 -12.14021 -11.93307 -11.84685 -11.44181 -11.36854 -11.13891 -10.96215 -10.76565 -10.21954 -9.89800 -9.51160 -9.26482 -8.01826 -5.33982 -0.73341 0.25960 0.73549 1.12683 1.36888 1.39475 1.46347 1.90295 1.94661 2.47974 3.23342 3.27856 3.39605 3.48289 3.62106 3.70809 3.84633 3.87504 3.92543 3.99885 4.15681 4.35111 4.52434 4.57303 4.66321 4.71049 4.80313 4.84909 4.86906 4.97087 5.01860 5.09047 5.11286 5.16317 5.19247 5.48890 5.53004 5.59188 5.79090 6.23262 6.34944 7.01421 7.08533 7.85230 8.04427 9.19591 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.003223 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.949411 B = 8685.598224 C = 9009.964760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.060 4.060 3 Si 0.943 3.057 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.228 4.228 8 H 0.061 0.939 9 N -0.734 5.734 10 C 0.184 3.816 11 H 0.083 0.917 12 C -0.174 4.174 13 C 0.146 3.854 14 H 0.095 0.905 15 N -0.688 5.688 16 C 0.590 3.410 17 O -0.571 6.571 18 C -0.357 4.357 19 S 0.310 5.690 20 C -0.183 4.183 21 C -0.190 4.190 22 C 0.144 3.856 23 F -0.127 7.127 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.113 4.113 28 H 0.257 0.743 29 H 0.367 0.633 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.409 0.591 33 H 0.222 0.778 34 H 0.181 0.819 35 H 0.102 0.898 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.343 -19.228 6.542 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.252 4.252 3 Si 0.771 3.229 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.359 4.359 8 H 0.079 0.921 9 N -0.376 5.376 10 C 0.074 3.926 11 H 0.101 0.899 12 C -0.216 4.216 13 C 0.040 3.960 14 H 0.113 0.887 15 N -0.337 5.337 16 C 0.378 3.622 17 O -0.452 6.452 18 C -0.478 4.478 19 S 0.577 5.423 20 C -0.321 4.321 21 C -0.221 4.221 22 C 0.108 3.892 23 F -0.106 7.106 24 C -0.118 4.118 25 C -0.152 4.152 26 C -0.171 4.171 27 C -0.150 4.150 28 H 0.065 0.935 29 H 0.202 0.798 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.239 0.761 34 H 0.198 0.802 35 H 0.120 0.880 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.565 -18.429 6.907 25.092 hybrid contribution 0.901 0.656 -1.459 1.835 sum 16.466 -17.773 5.448 24.833 Atomic orbital electron populations 1.69868 1.07031 1.26504 1.59906 1.25406 0.95966 1.00860 1.02924 0.85588 0.79036 0.80365 0.77922 1.21036 1.22344 1.17226 1.19093 0.82617 0.93465 1.40695 0.92064 1.42697 1.02323 1.03772 1.88781 1.21540 0.89287 0.88350 0.93448 0.89900 1.24165 0.97491 1.00715 0.99238 1.21473 0.98724 0.79261 0.96528 0.88672 1.45288 1.39182 1.06767 1.42514 1.17022 0.80147 0.84412 0.80596 1.90842 1.39908 1.79969 1.34506 1.24626 1.12263 0.97231 1.13703 1.83100 1.31248 0.96317 1.31662 1.25685 0.99804 1.04994 1.01624 1.20010 1.03528 0.96887 1.01653 1.17510 0.88889 0.93719 0.89124 1.91517 1.62458 1.95443 1.61139 1.23407 0.96492 0.97018 0.94930 1.22590 1.00715 0.94653 0.97220 1.22717 1.01506 0.96856 0.96000 1.22647 1.02466 0.96612 0.93305 0.93450 0.79783 0.90188 0.92420 0.75462 0.76094 0.80211 0.87970 0.92851 0.91870 0.89722 0.90863 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.14 13.97 21.65 0.30 -61.84 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 3 Si 0.94 44.86 27.74 68.60 1.90 46.76 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 7 C -0.23 -12.52 10.45 84.04 0.88 -11.64 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 9 N -0.73 -32.65 5.13 -321.56 -1.65 -34.30 16 10 C 0.18 6.50 4.27 45.28 0.19 6.70 16 11 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 12 C -0.17 -5.86 7.69 31.23 0.24 -5.62 16 13 C 0.15 4.17 4.13 45.28 0.19 4.36 16 14 H 0.10 2.91 7.46 -2.38 -0.02 2.89 16 15 N -0.69 -17.38 5.04 -445.47 -2.25 -19.63 16 16 C 0.59 17.14 7.77 86.34 0.67 17.81 16 17 O -0.57 -21.50 15.73 -4.45 -0.07 -21.57 16 18 C -0.36 -8.03 6.45 24.06 0.16 -7.88 16 19 S 0.31 3.72 22.14 -56.49 -1.25 2.47 16 20 C -0.18 -1.47 10.91 66.80 0.73 -0.74 16 21 C -0.19 -2.48 10.15 21.12 0.21 -2.27 16 22 C 0.14 3.21 7.48 21.84 0.16 3.37 16 23 F -0.13 -3.63 16.43 44.97 0.74 -2.89 16 24 C -0.12 -3.23 0.92 -52.31 -0.05 -3.28 16 25 C -0.11 -3.05 7.47 30.88 0.23 -2.82 16 26 C -0.13 -3.37 8.08 31.23 0.25 -3.12 16 27 C -0.11 -2.59 7.49 30.88 0.23 -2.35 16 28 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.37 15.90 3.78 -92.71 -0.35 15.55 16 30 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.41 8.40 7.72 -92.71 -0.72 7.69 16 33 H 0.22 -0.05 8.06 -2.91 -0.02 -0.07 16 34 H 0.18 1.46 8.06 -2.91 -0.02 1.43 16 35 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.64 6.42 -2.39 -0.02 1.62 16 37 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -75.35 348.62 2.26 -73.10 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.03 Total: 28.40 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 4.56 Total: -10.49 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -3.59 Total: -115.77 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.07 Total: -21.57 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.74 Total: -2.89 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.90 Total: 46.76 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.25 Total: 2.47 kcal Total: -75.35 2.26 -73.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.288 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds