Wall clock time and date at job start Tue Mar 31 2020 13:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48501 * 109.47466 * 270.00188 * 3 2 1 5 5 H 1.48500 * 109.47060 * 30.00451 * 3 2 1 6 6 H 1.48500 * 109.46948 * 150.00211 * 3 2 1 7 7 C 1.38809 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00162 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00056 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.95063 * 23.59726 * 10 9 7 12 12 C 1.53950 * 113.66498 * 252.18652 * 10 9 7 13 13 C 1.53950 * 87.29557 * 220.79882 * 12 10 9 14 14 H 1.08997 * 113.66410 * 139.21007 * 13 12 10 15 15 N 1.46505 * 113.66161 * 270.26117 * 13 12 10 16 16 C 1.34774 * 120.00307 * 252.18865 * 15 13 12 17 17 O 1.21739 * 119.99689 * 0.02562 * 16 15 13 18 18 C 1.46341 * 120.00346 * 180.02562 * 16 15 13 19 19 C 1.36734 * 125.43657 * 179.72260 * 18 16 15 20 20 C 1.37352 * 113.33033 * 179.83732 * 19 18 16 21 21 C 1.34208 * 115.04160 * 0.45010 * 20 19 18 22 22 F 1.35100 * 124.53524 * 179.78336 * 21 20 19 23 23 S 1.70614 * 110.92028 * 359.74857 * 21 20 19 24 24 C 1.52906 * 113.65955 * 155.00036 * 10 9 7 25 25 C 1.52913 * 121.13846 * 265.09168 * 24 10 9 26 26 C 1.53952 * 86.78179 * 100.82243 * 25 24 10 27 27 C 1.53068 * 121.06931 * 13.63536 * 24 10 9 28 28 H 0.96996 * 120.00198 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99745 * 359.97438 * 9 7 2 30 30 H 1.09000 * 113.57962 * 335.40275 * 12 10 9 31 31 H 1.08999 * 113.57924 * 106.11572 * 12 10 9 32 32 H 0.97003 * 119.99990 * 72.18590 * 15 13 12 33 33 H 1.08004 * 123.33572 * 359.97438 * 19 18 16 34 34 H 1.08000 * 122.47645 * 180.17413 * 20 19 18 35 35 H 1.09000 * 113.66161 * 346.35132 * 25 24 10 36 36 H 1.09002 * 113.66537 * 215.28969 * 25 24 10 37 37 H 1.09002 * 113.58142 * 139.33940 * 26 25 24 38 38 H 1.09004 * 113.57653 * 270.05541 * 26 25 24 39 39 H 1.09006 * 113.66752 * 144.67391 * 27 24 10 40 40 H 1.09001 * 113.71350 * 13.57398 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5280 -3.2989 -0.4025 12 6 4.7953 -2.7899 1.3412 13 6 6.0006 -3.2915 0.5252 14 1 6.9640 -3.0034 0.9458 15 7 5.9287 -4.7146 0.1846 16 6 6.7411 -5.5967 0.7997 17 8 7.5344 -5.2109 1.6387 18 6 6.6698 -7.0181 0.4590 19 6 7.4417 -8.0045 1.0075 20 6 7.1641 -9.2535 0.5079 21 6 6.2024 -9.2903 -0.4275 22 9 5.7808 -10.4136 -1.0487 23 16 5.5829 -7.7290 -0.7262 24 6 5.5181 -2.3676 -0.5935 25 6 5.7834 -2.6993 -2.0625 26 6 5.7856 -1.1806 -2.3150 27 6 6.1753 -1.0066 -0.8358 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3620 -0.0014 30 1 5.0123 -1.9061 1.9410 31 1 4.2950 -3.5741 1.9094 32 1 5.2963 -5.0221 -0.4836 33 1 8.1935 -7.8201 1.7606 34 1 7.6846 -10.1397 0.8399 35 1 4.9598 -3.2224 -2.5485 36 1 6.7495 -3.1730 -2.2365 37 1 6.5590 -0.8554 -3.0109 38 1 4.8022 -0.7775 -2.5572 39 1 7.2518 -1.0038 -0.6644 40 1 5.6644 -0.1792 -0.3433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078829627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:26 Heat of formation + Delta-G solvation = 19.286839 kcal Electronic energy + Delta-G solvation = -24807.739603 eV Core-core repulsion = 21051.922254 eV Total energy + Delta-G solvation = -3755.817350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -49.48528 -40.83669 -39.36728 -37.64503 -35.20211 -34.24777 -32.45947 -30.66087 -29.53547 -25.75895 -25.58352 -24.57907 -24.27902 -22.51668 -21.56395 -20.34175 -20.15709 -19.28939 -18.43463 -17.38862 -16.93437 -16.65827 -16.38964 -15.84179 -15.27518 -15.06442 -14.96497 -14.86800 -14.65243 -14.14657 -13.66185 -13.20322 -12.95887 -12.65275 -12.56180 -12.45087 -12.23993 -12.14386 -11.99265 -11.58932 -11.42761 -11.04234 -11.00712 -10.76407 -10.36197 -10.27851 -10.03899 -9.98556 -9.75719 -9.53329 -9.21197 -9.14971 -8.93548 -8.84090 -7.32630 -5.83685 -3.19498 -0.05459 0.57867 1.20735 1.84273 2.93090 2.97586 3.32149 3.34557 3.40974 3.88103 4.50269 4.52619 4.59941 4.81396 4.84369 4.88228 4.89219 5.05691 5.06741 5.28854 5.37578 5.45741 5.53088 5.62837 5.76345 5.76939 5.84741 5.86659 5.91829 5.96418 6.13700 6.22008 6.26619 6.31495 6.49446 6.66249 6.71790 6.85004 7.36148 7.92259 8.01291 8.35951 9.13432 9.85838 10.05521 11.34439 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.003116 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.045474 B = 8984.301223 C = 9465.580981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.732 5.732 10 C 0.197 3.803 11 H 0.085 0.915 12 C -0.175 4.175 13 C 0.131 3.869 14 H 0.101 0.899 15 N -0.697 5.697 16 C 0.593 3.407 17 O -0.527 6.527 18 C -0.257 4.257 19 C -0.038 4.038 20 C -0.182 4.182 21 C -0.024 4.024 22 F -0.099 7.099 23 S 0.232 5.768 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.134 4.134 27 C -0.111 4.111 28 H 0.260 0.740 29 H 0.364 0.636 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.035 -15.855 -2.929 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.372 5.372 10 C 0.085 3.915 11 H 0.103 0.897 12 C -0.217 4.217 13 C 0.026 3.974 14 H 0.119 0.881 15 N -0.346 5.346 16 C 0.378 3.622 17 O -0.405 6.405 18 C -0.378 4.378 19 C -0.070 4.070 20 C -0.215 4.215 21 C -0.162 4.162 22 F -0.078 7.078 23 S 0.497 5.503 24 C -0.129 4.129 25 C -0.163 4.163 26 C -0.172 4.172 27 C -0.149 4.149 28 H 0.070 0.930 29 H 0.199 0.801 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.233 0.767 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.157 -15.075 -3.341 21.637 hybrid contribution 1.186 0.046 0.571 1.317 sum 16.343 -15.028 -2.770 22.374 Atomic orbital electron populations 1.69695 1.05118 1.25916 1.57110 1.24669 0.95200 0.97164 1.01791 0.86629 0.79324 0.85167 0.77892 1.20921 1.21643 1.20263 1.19110 0.80580 0.94752 1.43421 0.89136 1.42732 1.03972 1.01961 1.88526 1.21280 0.87977 0.90145 0.92061 0.89745 1.24264 0.96455 1.01046 0.99910 1.21743 1.00145 0.78224 0.97301 0.88080 1.45479 1.39207 1.07643 1.42307 1.16729 0.80881 0.83206 0.81333 1.90852 1.38157 1.78762 1.32733 1.24601 1.06966 0.98461 1.07770 1.20489 0.98338 0.89386 0.98790 1.20304 1.00771 1.00548 0.99879 1.21991 1.03437 0.89027 1.01747 1.91546 1.88653 1.47114 1.80480 1.83595 1.35549 0.94435 1.36732 1.23671 0.99479 0.96256 0.93463 1.22644 1.01159 0.96956 0.95540 1.22770 1.02137 0.96294 0.95953 1.22514 0.99599 0.95909 0.96901 0.92976 0.80105 0.89437 0.91662 0.76723 0.81805 0.82422 0.91309 0.90639 0.92092 0.89339 0.90233 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.97 55.49 0.78 -27.75 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.43 27.73 -169.99 -4.71 16.72 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 7 C -0.25 -6.69 10.45 -15.06 -0.16 -6.85 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 N -0.73 -16.17 5.13 -52.99 -0.27 -16.45 16 10 C 0.20 3.48 4.27 -67.49 -0.29 3.19 16 11 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 12 C -0.17 -2.85 7.68 -25.75 -0.20 -3.05 16 13 C 0.13 1.83 4.13 -67.48 -0.28 1.56 16 14 H 0.10 1.48 7.46 -51.93 -0.39 1.10 16 15 N -0.70 -8.57 5.04 -54.78 -0.28 -8.85 16 16 C 0.59 7.73 7.77 -13.00 -0.10 7.63 16 17 O -0.53 -8.53 16.44 5.15 0.08 -8.44 16 18 C -0.26 -2.68 6.44 -36.87 -0.24 -2.92 16 19 C -0.04 -0.34 10.00 -40.45 -0.40 -0.75 16 20 C -0.18 -1.46 10.16 -41.32 -0.42 -1.88 16 21 C -0.02 -0.21 8.10 29.31 0.24 0.02 16 22 F -0.10 -0.94 17.32 2.25 0.04 -0.90 16 23 S 0.23 1.98 22.14 -107.50 -2.38 -0.40 16 24 C -0.13 -1.80 0.92 -154.63 -0.14 -1.95 16 25 C -0.13 -1.58 7.49 -26.28 -0.20 -1.78 16 26 C -0.13 -1.82 8.08 -25.75 -0.21 -2.03 16 27 C -0.11 -1.56 7.48 -26.20 -0.20 -1.76 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.36 7.97 3.78 -40.82 -0.15 7.82 16 30 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.40 4.25 7.72 -40.82 -0.32 3.94 16 33 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.13 6.41 -51.93 -0.33 0.79 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -31.26 349.95 -9.16 -40.42 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.01 Total: 10.79 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.69 Total: -10.42 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.23 Total: -53.04 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.04 Total: -0.90 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.72 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.38 Total: -0.40 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.26 -9.16 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078829627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.707 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds