Wall clock time and date at job start Tue Mar 31 2020 13:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99766 * 2 1 4 4 H 1.48501 * 109.47466 * 270.00188 * 3 2 1 5 5 H 1.48500 * 109.47060 * 30.00451 * 3 2 1 6 6 H 1.48500 * 109.46948 * 150.00211 * 3 2 1 7 7 C 1.38809 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00162 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00056 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.95063 * 23.59726 * 10 9 7 12 12 C 1.53950 * 113.66498 * 252.18652 * 10 9 7 13 13 C 1.53950 * 87.29557 * 220.79882 * 12 10 9 14 14 H 1.08997 * 113.66410 * 139.21007 * 13 12 10 15 15 N 1.46505 * 113.66161 * 270.26117 * 13 12 10 16 16 C 1.34774 * 120.00307 * 252.18865 * 15 13 12 17 17 O 1.21739 * 119.99689 * 0.02562 * 16 15 13 18 18 C 1.46341 * 120.00346 * 180.02562 * 16 15 13 19 19 C 1.36734 * 125.43657 * 179.72260 * 18 16 15 20 20 C 1.37352 * 113.33033 * 179.83732 * 19 18 16 21 21 C 1.34208 * 115.04160 * 0.45010 * 20 19 18 22 22 F 1.35100 * 124.53524 * 179.78336 * 21 20 19 23 23 S 1.70614 * 110.92028 * 359.74857 * 21 20 19 24 24 C 1.52906 * 113.65955 * 155.00036 * 10 9 7 25 25 C 1.52913 * 121.13846 * 265.09168 * 24 10 9 26 26 C 1.53952 * 86.78179 * 100.82243 * 25 24 10 27 27 C 1.53068 * 121.06931 * 13.63536 * 24 10 9 28 28 H 0.96996 * 120.00198 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99745 * 359.97438 * 9 7 2 30 30 H 1.09000 * 113.57962 * 335.40275 * 12 10 9 31 31 H 1.08999 * 113.57924 * 106.11572 * 12 10 9 32 32 H 0.97003 * 119.99990 * 72.18590 * 15 13 12 33 33 H 1.08004 * 123.33572 * 359.97438 * 19 18 16 34 34 H 1.08000 * 122.47645 * 180.17413 * 20 19 18 35 35 H 1.09000 * 113.66161 * 346.35132 * 25 24 10 36 36 H 1.09002 * 113.66537 * 215.28969 * 25 24 10 37 37 H 1.09002 * 113.58142 * 139.33940 * 26 25 24 38 38 H 1.09004 * 113.57653 * 270.05541 * 26 25 24 39 39 H 1.09006 * 113.66752 * 144.67391 * 27 24 10 40 40 H 1.09001 * 113.71350 * 13.57398 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0466 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5280 -3.2989 -0.4025 12 6 4.7953 -2.7899 1.3412 13 6 6.0006 -3.2915 0.5252 14 1 6.9640 -3.0034 0.9458 15 7 5.9287 -4.7146 0.1846 16 6 6.7411 -5.5967 0.7997 17 8 7.5344 -5.2109 1.6387 18 6 6.6698 -7.0181 0.4590 19 6 7.4417 -8.0045 1.0075 20 6 7.1641 -9.2535 0.5079 21 6 6.2024 -9.2903 -0.4275 22 9 5.7808 -10.4136 -1.0487 23 16 5.5829 -7.7290 -0.7262 24 6 5.5181 -2.3676 -0.5935 25 6 5.7834 -2.6993 -2.0625 26 6 5.7856 -1.1806 -2.3150 27 6 6.1753 -1.0066 -0.8358 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3620 -0.0014 30 1 5.0123 -1.9061 1.9410 31 1 4.2950 -3.5741 1.9094 32 1 5.2963 -5.0221 -0.4836 33 1 8.1935 -7.8201 1.7606 34 1 7.6846 -10.1397 0.8399 35 1 4.9598 -3.2224 -2.5485 36 1 6.7495 -3.1730 -2.2365 37 1 6.5590 -0.8554 -3.0109 38 1 4.8022 -0.7775 -2.5572 39 1 7.2518 -1.0038 -0.6644 40 1 5.6644 -0.1792 -0.3433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078829627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:25 Heat of formation + Delta-G solvation = 0.011315 kcal Electronic energy + Delta-G solvation = -24808.575453 eV Core-core repulsion = 21051.922254 eV Total energy + Delta-G solvation = -3756.653199 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.20003 -42.02831 -40.39253 -38.42614 -36.43441 -35.88749 -33.97888 -32.43560 -30.41770 -26.88230 -26.73483 -25.85262 -25.50081 -23.83078 -22.82250 -21.49162 -20.97031 -20.24588 -20.08661 -18.71149 -17.88754 -17.59582 -17.10787 -16.90353 -16.63996 -16.55992 -16.02419 -15.94541 -15.58279 -15.46570 -14.91733 -14.44550 -14.15330 -14.12108 -13.95470 -13.49405 -13.38146 -13.19699 -13.14887 -12.95129 -12.82868 -12.50397 -12.13505 -12.11217 -11.95644 -11.86361 -11.41486 -11.33277 -11.12799 -10.95230 -10.76646 -10.12551 -9.83295 -9.78761 -9.25721 -8.01946 -5.34116 -0.80478 -0.11870 0.49470 1.11859 1.36863 1.39309 1.46326 1.92925 2.03360 2.47848 3.19806 3.27789 3.41305 3.49793 3.65302 3.72667 3.85251 3.89894 4.01192 4.13982 4.17438 4.25836 4.54121 4.59102 4.68485 4.73511 4.80963 4.87745 4.91711 4.99292 5.03630 5.10643 5.12118 5.12736 5.18218 5.50073 5.54695 5.60462 5.78999 6.23288 6.36233 7.01128 7.08718 7.85609 8.04571 9.19627 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.003116 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.045474 B = 8984.301223 C = 9465.580981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.061 4.061 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.254 1.254 7 C -0.228 4.228 8 H 0.060 0.940 9 N -0.735 5.735 10 C 0.180 3.820 11 H 0.080 0.920 12 C -0.174 4.174 13 C 0.149 3.851 14 H 0.103 0.897 15 N -0.693 5.693 16 C 0.596 3.404 17 O -0.562 6.562 18 C -0.282 4.282 19 C -0.029 4.029 20 C -0.176 4.176 21 C -0.031 4.031 22 F -0.102 7.102 23 S 0.257 5.743 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.135 4.135 27 C -0.112 4.112 28 H 0.257 0.743 29 H 0.368 0.632 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.407 0.593 33 H 0.172 0.828 34 H 0.183 0.817 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.824 -16.763 -3.627 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.252 4.252 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.178 1.178 7 C -0.359 4.359 8 H 0.078 0.922 9 N -0.376 5.376 10 C 0.070 3.930 11 H 0.098 0.902 12 C -0.216 4.216 13 C 0.043 3.957 14 H 0.120 0.880 15 N -0.342 5.342 16 C 0.383 3.617 17 O -0.443 6.443 18 C -0.403 4.403 19 C -0.062 4.062 20 C -0.209 4.209 21 C -0.169 4.169 22 F -0.081 7.081 23 S 0.522 5.478 24 C -0.120 4.120 25 C -0.152 4.152 26 C -0.172 4.172 27 C -0.150 4.150 28 H 0.066 0.934 29 H 0.203 0.797 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.189 0.811 34 H 0.200 0.800 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.992 -16.030 -4.062 24.437 hybrid contribution 0.309 0.144 0.798 0.868 sum 18.301 -15.886 -3.264 24.453 Atomic orbital electron populations 1.69871 1.07077 1.26531 1.59909 1.25422 0.95974 1.00934 1.02911 0.85561 0.78699 0.80242 0.78235 1.20152 1.22578 1.17832 1.19091 0.82697 0.93412 1.40729 0.92232 1.42695 1.02269 1.03822 1.88829 1.21571 0.89388 0.88255 0.93760 0.90220 1.24158 0.97540 1.00791 0.99077 1.21466 0.98906 0.79115 0.96219 0.87952 1.45401 1.39373 1.06966 1.42423 1.16993 0.80058 0.84109 0.80507 1.90830 1.39596 1.79610 1.34259 1.24398 1.08850 0.97389 1.09679 1.20684 0.97792 0.89417 0.98307 1.20501 1.00307 1.00956 0.99095 1.22176 1.03724 0.89024 1.02000 1.91543 1.88725 1.47284 1.80579 1.83490 1.34589 0.94036 1.35642 1.23446 0.96434 0.97189 0.94907 1.22653 1.02428 0.96619 0.93461 1.22727 1.01469 0.96847 0.96203 1.22613 1.00876 0.94549 0.96959 0.93445 0.79747 0.90135 0.92322 0.75729 0.81070 0.80015 0.91277 0.88205 0.89687 0.92014 0.87657 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.25 13.97 21.65 0.30 -61.95 16 2 C -0.06 -3.52 5.50 84.86 0.47 -3.06 16 3 Si 0.94 44.70 27.73 68.60 1.90 46.60 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 7 C -0.23 -12.55 10.45 84.03 0.88 -11.67 16 8 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 9 N -0.73 -32.43 5.13 -321.57 -1.65 -34.08 16 10 C 0.18 6.27 4.27 45.28 0.19 6.46 16 11 H 0.08 2.83 8.10 -2.39 -0.02 2.81 16 12 C -0.17 -5.58 7.68 31.23 0.24 -5.34 16 13 C 0.15 3.92 4.13 45.28 0.19 4.10 16 14 H 0.10 2.79 7.46 -2.39 -0.02 2.77 16 15 N -0.69 -15.91 5.04 -445.42 -2.25 -18.15 16 16 C 0.60 14.66 7.77 86.35 0.67 15.34 16 17 O -0.56 -17.55 16.44 -4.47 -0.07 -17.62 16 18 C -0.28 -5.39 6.44 24.03 0.15 -5.24 16 19 C -0.03 -0.46 10.00 21.71 0.22 -0.25 16 20 C -0.18 -2.35 10.16 21.14 0.21 -2.14 16 21 C -0.03 -0.48 8.10 66.90 0.54 0.06 16 22 F -0.10 -1.73 17.32 44.97 0.78 -0.95 16 23 S 0.26 3.91 22.14 -56.49 -1.25 2.66 16 24 C -0.12 -3.14 0.92 -52.26 -0.05 -3.19 16 25 C -0.11 -2.55 7.49 30.89 0.23 -2.32 16 26 C -0.14 -3.32 8.08 31.23 0.25 -3.06 16 27 C -0.11 -2.86 7.48 30.94 0.23 -2.63 16 28 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.37 15.75 3.78 -92.71 -0.35 15.40 16 30 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.41 7.99 7.72 -92.71 -0.72 7.28 16 33 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.05 1.56 6.41 -2.39 -0.02 1.55 16 Total: -1.00 -68.82 349.95 2.16 -66.66 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: -0.03 Total: 29.75 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 4.43 Total: -12.92 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -3.59 Total: -114.18 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.07 Total: -17.62 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.78 Total: -0.95 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.25 Total: 2.66 kcal Total: -68.82 2.16 -66.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078829627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.668 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds