Wall clock time and date at job start Tue Mar 31 2020 13:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00023 * 2 1 4 4 H 1.48498 * 109.47169 * 269.99621 * 3 2 1 5 5 H 1.48497 * 109.47268 * 29.99477 * 3 2 1 6 6 H 1.48503 * 109.47343 * 149.99574 * 3 2 1 7 7 C 1.38811 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00414 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00357 * 180.02562 * 9 7 2 11 11 H 1.09007 * 112.94663 * 336.40653 * 10 9 7 12 12 C 1.53950 * 113.66590 * 107.80940 * 10 9 7 13 13 C 1.53950 * 87.29389 * 139.21003 * 12 10 9 14 14 H 1.09001 * 113.66397 * 220.79813 * 13 12 10 15 15 N 1.46497 * 113.74763 * 89.75264 * 13 12 10 16 16 C 1.34771 * 120.00091 * 107.77505 * 15 13 12 17 17 O 1.21734 * 120.00038 * 359.97438 * 16 15 13 18 18 C 1.46345 * 120.00101 * 180.02562 * 16 15 13 19 19 C 1.36735 * 125.43627 * 179.97438 * 18 16 15 20 20 C 1.37341 * 113.33028 * 179.97438 * 19 18 16 21 21 C 1.34209 * 115.04926 * 0.02562 * 20 19 18 22 22 F 1.35095 * 124.54368 * 179.97438 * 21 20 19 23 23 S 1.70617 * 110.91285 * 359.72116 * 21 20 19 24 24 C 1.52910 * 113.66432 * 205.00449 * 10 9 7 25 25 C 1.52907 * 121.13351 * 346.33646 * 24 10 9 26 26 C 1.53951 * 86.77862 * 100.82528 * 25 24 10 27 27 C 1.52903 * 121.13886 * 94.90300 * 24 10 9 28 28 H 0.96997 * 120.00107 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00308 * 359.97438 * 9 7 2 30 30 H 1.09001 * 113.57502 * 24.60657 * 12 10 9 31 31 H 1.09001 * 113.65122 * 253.82431 * 12 10 9 32 32 H 0.97005 * 119.99637 * 287.76929 * 15 13 12 33 33 H 1.07997 * 123.33583 * 359.97438 * 19 18 16 34 34 H 1.08002 * 122.47699 * 179.97438 * 20 19 18 35 35 H 1.08995 * 113.66604 * 215.29469 * 25 24 10 36 36 H 1.08996 * 113.66613 * 346.35541 * 25 24 10 37 37 H 1.09000 * 113.58140 * 270.13184 * 26 25 24 38 38 H 1.08998 * 113.65170 * 139.34675 * 26 25 24 39 39 H 1.08999 * 113.66373 * 13.65529 * 27 24 10 40 40 H 1.09000 * 113.66011 * 144.70603 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0675 -3.5651 -0.3994 12 6 1.9925 -4.4070 1.3444 13 6 1.8247 -5.7022 0.5293 14 1 1.0932 -6.3922 0.9499 15 7 3.0921 -6.3533 0.1888 16 6 3.4487 -7.4976 0.8051 17 8 2.7178 -7.9899 1.6450 18 6 4.7150 -8.1477 0.4654 19 6 5.1850 -9.3062 1.0193 20 6 6.4026 -9.6946 0.5164 21 6 6.9163 -8.8816 -0.4197 22 9 8.0996 -9.0797 -1.0406 23 16 5.8714 -7.5679 -0.7253 24 6 1.2661 -4.8232 -0.5904 25 6 -0.2396 -4.7140 -0.8333 26 6 0.1051 -4.4625 -2.3125 27 6 1.4213 -5.2196 -2.0590 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 1.1182 -4.1526 1.9437 31 1 2.9213 -4.3671 1.9134 32 1 3.6746 -5.9608 -0.4803 33 1 4.6517 -9.8607 1.7771 34 1 6.9096 -10.5879 0.8502 35 1 -0.7791 -5.6455 -0.6621 36 1 -0.7014 -3.8587 -0.3402 37 1 0.2476 -3.4091 -2.5540 38 1 -0.5623 -4.9694 -3.0093 39 1 2.2863 -4.7683 -2.5449 40 1 1.3487 -6.2933 -2.2322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078829629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:34 Heat of formation + Delta-G solvation = 15.038025 kcal Electronic energy + Delta-G solvation = -24735.750916 eV Core-core repulsion = 20979.749324 eV Total energy + Delta-G solvation = -3756.001592 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.47944 -40.71150 -39.29320 -37.61512 -35.07297 -34.11243 -32.42432 -30.24432 -29.34600 -25.66080 -25.41709 -24.52404 -24.15375 -22.67132 -21.64083 -20.21591 -20.13490 -19.25996 -17.97126 -17.25058 -16.81790 -16.62477 -16.38189 -15.76250 -15.23081 -14.97665 -14.86133 -14.84059 -14.54180 -13.90255 -13.74111 -13.33781 -12.89278 -12.59727 -12.48432 -12.42142 -12.03594 -11.82649 -11.72966 -11.42612 -11.37313 -10.90814 -10.85828 -10.63993 -10.26185 -10.19701 -10.08222 -9.91428 -9.67584 -9.43064 -9.19320 -9.13119 -8.88404 -8.75831 -7.00861 -5.82998 -3.11705 -0.03781 0.59071 1.22153 1.86136 2.98870 3.01961 3.39691 3.45606 3.46957 3.89132 4.53263 4.55893 4.74617 4.85689 4.90156 4.98135 5.05102 5.19317 5.25671 5.39124 5.40331 5.57144 5.67041 5.77985 5.79579 5.92292 5.97878 6.02090 6.07933 6.11034 6.28159 6.37853 6.41218 6.54337 6.59579 6.85057 6.89259 6.99848 7.42520 7.65000 8.06527 8.35653 9.47450 10.04105 10.39012 11.39167 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003136 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.070355 B = 8925.829140 C = 9707.052029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.707 5.707 10 C 0.191 3.809 11 H 0.076 0.924 12 C -0.174 4.174 13 C 0.129 3.871 14 H 0.100 0.900 15 N -0.696 5.696 16 C 0.592 3.408 17 O -0.527 6.527 18 C -0.255 4.255 19 C -0.039 4.039 20 C -0.182 4.182 21 C -0.025 4.025 22 F -0.099 7.099 23 S 0.230 5.770 24 C -0.122 4.122 25 C -0.109 4.109 26 C -0.131 4.131 27 C -0.128 4.128 28 H 0.256 0.744 29 H 0.388 0.612 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.397 0.603 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.898 -18.913 -2.847 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.078 3.922 11 H 0.093 0.907 12 C -0.217 4.217 13 C 0.024 3.976 14 H 0.118 0.882 15 N -0.345 5.345 16 C 0.377 3.623 17 O -0.405 6.405 18 C -0.376 4.376 19 C -0.071 4.071 20 C -0.214 4.214 21 C -0.163 4.163 22 F -0.078 7.078 23 S 0.495 5.505 24 C -0.125 4.125 25 C -0.147 4.147 26 C -0.168 4.168 27 C -0.165 4.165 28 H 0.066 0.934 29 H 0.224 0.776 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.232 0.768 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.585 -17.810 -3.260 20.486 hybrid contribution 0.869 -0.252 0.546 1.057 sum 10.454 -18.062 -2.714 21.045 Atomic orbital electron populations 1.69648 1.05104 1.25802 1.57279 1.24738 0.95489 0.97705 1.02685 0.86214 0.78723 0.83877 0.77503 1.21712 1.21773 1.20744 1.19276 0.91039 0.84170 1.43152 0.91165 1.42393 1.05918 0.99519 1.86720 1.21289 0.94326 0.84646 0.91916 0.90658 1.24296 1.02152 0.95133 1.00085 1.21794 0.84538 0.93658 0.97642 0.88237 1.45492 1.22714 1.24227 1.42090 1.16733 0.83710 0.80433 0.81421 1.90851 1.52296 1.64634 1.32724 1.24629 1.01737 1.03810 1.07434 1.20489 0.93796 0.93942 0.98866 1.20301 0.97934 1.03339 0.99867 1.21983 0.89077 1.03441 1.01803 1.91541 1.41508 1.94265 1.80520 1.83575 1.09039 1.21427 1.36475 1.23616 0.97888 0.97948 0.93024 1.22450 0.93668 1.01716 0.96856 1.22736 0.96511 1.01472 0.96083 1.22659 0.98699 0.99306 0.95843 0.93412 0.77647 0.89341 0.92157 0.76840 0.81790 0.82435 0.90697 0.90198 0.89136 0.92432 0.91699 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.25 -6.49 9.97 -15.06 -0.15 -6.64 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.71 -16.57 5.32 -52.99 -0.28 -16.85 16 10 C 0.19 3.52 4.28 -67.48 -0.29 3.23 16 11 H 0.08 1.37 8.10 -51.92 -0.42 0.95 16 12 C -0.17 -2.99 7.69 -25.75 -0.20 -3.19 16 13 C 0.13 1.91 4.12 -67.48 -0.28 1.63 16 14 H 0.10 1.56 7.46 -51.93 -0.39 1.17 16 15 N -0.70 -8.97 5.05 -54.78 -0.28 -9.25 16 16 C 0.59 8.00 7.77 -13.00 -0.10 7.90 16 17 O -0.53 -8.81 16.44 5.16 0.08 -8.72 16 18 C -0.26 -2.74 6.44 -36.87 -0.24 -2.98 16 19 C -0.04 -0.36 10.00 -40.45 -0.40 -0.77 16 20 C -0.18 -1.48 10.16 -41.33 -0.42 -1.90 16 21 C -0.03 -0.23 8.10 29.31 0.24 0.01 16 22 F -0.10 -0.95 17.32 2.25 0.04 -0.91 16 23 S 0.23 2.01 22.14 -107.50 -2.38 -0.37 16 24 C -0.12 -1.87 0.92 -154.71 -0.14 -2.01 16 25 C -0.11 -1.68 7.47 -26.28 -0.20 -1.88 16 26 C -0.13 -1.95 8.08 -25.75 -0.21 -2.16 16 27 C -0.13 -1.74 7.49 -26.29 -0.20 -1.93 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.39 9.63 5.92 -40.82 -0.24 9.39 16 30 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 4.45 7.72 -40.82 -0.32 4.13 16 33 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 34 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.42 6.42 -51.93 -0.33 1.09 16 37 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -30.06 353.06 -9.52 -39.58 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.05 Total: 11.88 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.68 Total: -11.05 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.17 Total: -52.49 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 9 Polarization: -0.95 SS G_CDS: 0.04 Total: -0.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.38 Total: -0.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.06 -9.52 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078829629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.623 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds