Wall clock time and date at job start Tue Mar 31 2020 13:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00023 * 2 1 4 4 H 1.48498 * 109.47169 * 269.99621 * 3 2 1 5 5 H 1.48497 * 109.47268 * 29.99477 * 3 2 1 6 6 H 1.48503 * 109.47343 * 149.99574 * 3 2 1 7 7 C 1.38811 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00414 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99694 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00357 * 180.02562 * 9 7 2 11 11 H 1.09007 * 112.94663 * 336.40653 * 10 9 7 12 12 C 1.53950 * 113.66590 * 107.80940 * 10 9 7 13 13 C 1.53950 * 87.29389 * 139.21003 * 12 10 9 14 14 H 1.09001 * 113.66397 * 220.79813 * 13 12 10 15 15 N 1.46497 * 113.74763 * 89.75264 * 13 12 10 16 16 C 1.34771 * 120.00091 * 107.77505 * 15 13 12 17 17 O 1.21734 * 120.00038 * 359.97438 * 16 15 13 18 18 C 1.46345 * 120.00101 * 180.02562 * 16 15 13 19 19 C 1.36735 * 125.43627 * 179.97438 * 18 16 15 20 20 C 1.37341 * 113.33028 * 179.97438 * 19 18 16 21 21 C 1.34209 * 115.04926 * 0.02562 * 20 19 18 22 22 F 1.35095 * 124.54368 * 179.97438 * 21 20 19 23 23 S 1.70617 * 110.91285 * 359.72116 * 21 20 19 24 24 C 1.52910 * 113.66432 * 205.00449 * 10 9 7 25 25 C 1.52907 * 121.13351 * 346.33646 * 24 10 9 26 26 C 1.53951 * 86.77862 * 100.82528 * 25 24 10 27 27 C 1.52903 * 121.13886 * 94.90300 * 24 10 9 28 28 H 0.96997 * 120.00107 * 0.02562 * 1 2 3 29 29 H 0.97006 * 120.00308 * 359.97438 * 9 7 2 30 30 H 1.09001 * 113.57502 * 24.60657 * 12 10 9 31 31 H 1.09001 * 113.65122 * 253.82431 * 12 10 9 32 32 H 0.97005 * 119.99637 * 287.76929 * 15 13 12 33 33 H 1.07997 * 123.33583 * 359.97438 * 19 18 16 34 34 H 1.08002 * 122.47699 * 179.97438 * 20 19 18 35 35 H 1.08995 * 113.66604 * 215.29469 * 25 24 10 36 36 H 1.08996 * 113.66613 * 346.35541 * 25 24 10 37 37 H 1.09000 * 113.58140 * 270.13184 * 26 25 24 38 38 H 1.08998 * 113.65170 * 139.34675 * 26 25 24 39 39 H 1.08999 * 113.66373 * 13.65529 * 27 24 10 40 40 H 1.09000 * 113.66011 * 144.70603 * 27 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 3.0675 -3.5651 -0.3994 12 6 1.9925 -4.4070 1.3444 13 6 1.8247 -5.7022 0.5293 14 1 1.0932 -6.3922 0.9499 15 7 3.0921 -6.3533 0.1888 16 6 3.4487 -7.4976 0.8051 17 8 2.7178 -7.9899 1.6450 18 6 4.7150 -8.1477 0.4654 19 6 5.1850 -9.3062 1.0193 20 6 6.4026 -9.6946 0.5164 21 6 6.9163 -8.8816 -0.4197 22 9 8.0996 -9.0797 -1.0406 23 16 5.8714 -7.5679 -0.7253 24 6 1.2661 -4.8232 -0.5904 25 6 -0.2396 -4.7140 -0.8333 26 6 0.1051 -4.4625 -2.3125 27 6 1.4213 -5.2196 -2.0590 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 1.1182 -4.1526 1.9437 31 1 2.9213 -4.3671 1.9134 32 1 3.6746 -5.9608 -0.4803 33 1 4.6517 -9.8607 1.7771 34 1 6.9096 -10.5879 0.8502 35 1 -0.7791 -5.6455 -0.6621 36 1 -0.7014 -3.8587 -0.3402 37 1 0.2476 -3.4091 -2.5540 38 1 -0.5623 -4.9694 -3.0093 39 1 2.2863 -4.7683 -2.5449 40 1 1.3487 -6.2933 -2.2322 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078829629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:33 Heat of formation + Delta-G solvation = -2.709048 kcal Electronic energy + Delta-G solvation = -24736.520486 eV Core-core repulsion = 20979.749324 eV Total energy + Delta-G solvation = -3756.771163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.19575 -41.97320 -40.36820 -38.41917 -36.36876 -35.79418 -33.91395 -31.89489 -30.34843 -26.84540 -26.64448 -25.92115 -25.46729 -24.01653 -22.83089 -21.45719 -20.96267 -20.13595 -19.59233 -18.67920 -17.85573 -17.59517 -17.10247 -16.89287 -16.65793 -16.36089 -16.01754 -15.85753 -15.55800 -15.43977 -15.13928 -14.37666 -14.09361 -13.98046 -13.56055 -13.34872 -13.30821 -13.17139 -13.13197 -12.86927 -12.74701 -12.49958 -12.13963 -12.11093 -11.91565 -11.86095 -11.38937 -11.31343 -11.05515 -10.89556 -10.69307 -10.10671 -9.82440 -9.77605 -8.94405 -7.92272 -5.19549 -0.79997 -0.11356 0.49783 1.12465 1.48916 1.49479 1.57686 1.93932 2.04096 2.57741 3.20216 3.38713 3.46982 3.60013 3.72071 3.78950 3.92861 4.03244 4.12850 4.14372 4.26147 4.27360 4.57747 4.63396 4.73592 4.74641 4.84426 4.88712 4.93940 5.01311 5.07667 5.12554 5.14364 5.17967 5.24193 5.50531 5.58642 5.61459 5.66607 6.29731 6.38118 7.02633 7.37220 8.14002 8.37367 9.30855 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015752 B = 0.003136 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.070355 B = 8925.829140 C = 9707.052029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.967 3.033 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.719 5.719 10 C 0.177 3.823 11 H 0.081 0.919 12 C -0.173 4.173 13 C 0.149 3.851 14 H 0.097 0.903 15 N -0.690 5.690 16 C 0.595 3.405 17 O -0.564 6.564 18 C -0.282 4.282 19 C -0.030 4.030 20 C -0.176 4.176 21 C -0.031 4.031 22 F -0.102 7.102 23 S 0.260 5.740 24 C -0.114 4.114 25 C -0.111 4.111 26 C -0.130 4.130 27 C -0.112 4.112 28 H 0.250 0.750 29 H 0.378 0.622 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.407 0.593 33 H 0.171 0.829 34 H 0.182 0.818 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.811 -20.817 -3.677 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.196 1.196 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.357 5.357 10 C 0.067 3.933 11 H 0.099 0.901 12 C -0.215 4.215 13 C 0.043 3.957 14 H 0.115 0.885 15 N -0.340 5.340 16 C 0.382 3.618 17 O -0.445 6.445 18 C -0.403 4.403 19 C -0.063 4.063 20 C -0.209 4.209 21 C -0.169 4.169 22 F -0.081 7.081 23 S 0.526 5.474 24 C -0.116 4.116 25 C -0.149 4.149 26 C -0.168 4.168 27 C -0.149 4.149 28 H 0.059 0.941 29 H 0.212 0.788 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.243 0.757 33 H 0.188 0.812 34 H 0.200 0.800 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.562 -19.745 -4.114 23.248 hybrid contribution 0.352 0.240 0.821 0.925 sum 11.914 -19.505 -3.294 23.092 Atomic orbital electron populations 1.69802 1.06525 1.25906 1.59602 1.25475 0.96249 1.00821 1.03921 0.85229 0.77748 0.79981 0.77336 1.21467 1.22653 1.19558 1.19673 0.91496 0.85324 1.40761 0.90554 1.42537 1.05637 1.00517 1.87034 1.21585 0.94739 0.83692 0.93316 0.90118 1.24149 1.01401 0.96587 0.99324 1.21455 0.85346 0.92558 0.96386 0.88543 1.45373 1.22135 1.24151 1.42292 1.17024 0.84189 0.80033 0.80535 1.90831 1.53741 1.65574 1.34320 1.24386 1.01548 1.04841 1.09531 1.20677 0.93955 0.93258 0.98363 1.20489 0.97331 1.03900 0.99149 1.22168 0.89027 1.03741 1.01960 1.91542 1.41667 1.94298 1.80588 1.83439 1.07964 1.20844 1.35181 1.23381 0.97610 0.96038 0.94619 1.22504 0.93686 1.01611 0.97083 1.22646 0.98039 0.99982 0.96098 1.22639 0.98036 1.00593 0.93652 0.94143 0.78829 0.91011 0.92232 0.75680 0.81171 0.80029 0.88305 0.93256 0.92461 0.90123 0.91144 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.08 13.06 21.65 0.28 -57.80 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.32 29.55 68.60 2.03 47.34 16 4 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.24 -12.86 9.97 84.03 0.84 -12.02 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.72 -34.43 5.32 -321.56 -1.71 -36.14 16 10 C 0.18 6.50 4.28 45.28 0.19 6.70 16 11 H 0.08 2.86 8.10 -2.38 -0.02 2.84 16 12 C -0.17 -5.93 7.69 31.23 0.24 -5.69 16 13 C 0.15 4.24 4.12 45.28 0.19 4.43 16 14 H 0.10 2.92 7.46 -2.39 -0.02 2.90 16 15 N -0.69 -16.58 5.05 -445.42 -2.25 -18.83 16 16 C 0.59 15.17 7.77 86.35 0.67 15.84 16 17 O -0.56 -18.33 16.44 -4.46 -0.07 -18.40 16 18 C -0.28 -5.48 6.44 24.03 0.15 -5.33 16 19 C -0.03 -0.48 10.00 21.71 0.22 -0.27 16 20 C -0.18 -2.36 10.16 21.14 0.21 -2.15 16 21 C -0.03 -0.47 8.10 66.90 0.54 0.07 16 22 F -0.10 -1.69 17.32 44.97 0.78 -0.91 16 23 S 0.26 3.90 22.14 -56.49 -1.25 2.65 16 24 C -0.11 -3.38 0.92 -52.31 -0.05 -3.43 16 25 C -0.11 -3.37 7.47 30.88 0.23 -3.14 16 26 C -0.13 -3.74 8.08 31.23 0.25 -3.49 16 27 C -0.11 -2.77 7.49 30.88 0.23 -2.54 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.38 19.52 5.92 -92.70 -0.55 18.97 16 30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.41 8.20 7.72 -92.70 -0.72 7.48 16 33 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 1.81 6.42 -2.39 -0.02 1.80 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -65.58 353.06 2.02 -63.56 By element: Atomic # 1 Polarization: 33.28 SS G_CDS: -0.17 Total: 33.11 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: 4.39 Total: -14.58 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -3.68 Total: -112.77 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.07 Total: -18.40 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.78 Total: -0.91 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.25 Total: 2.65 kcal Total: -65.58 2.02 -63.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078829629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.847 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds