Wall clock time and date at job start Tue Mar 31 2020 13:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48501 * 109.47078 * 239.99958 * 3 2 1 5 5 H 1.48497 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46824 * 119.99769 * 3 2 1 7 7 C 1.38814 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.95638 * 336.40672 * 10 9 7 12 12 C 1.53957 * 113.65902 * 107.81807 * 10 9 7 13 13 C 1.53948 * 87.29686 * 89.73656 * 12 10 9 14 14 H 1.08998 * 113.66676 * 139.20284 * 13 12 10 15 15 N 1.46505 * 113.74574 * 270.25087 * 13 12 10 16 16 C 1.34782 * 119.99630 * 252.22883 * 15 13 12 17 17 O 1.21734 * 120.00341 * 359.97438 * 16 15 13 18 18 C 1.46345 * 119.99525 * 179.97438 * 16 15 13 19 19 C 1.36738 * 125.43270 * 180.02562 * 18 16 15 20 20 C 1.37341 * 113.33145 * 179.97438 * 19 18 16 21 21 C 1.34209 * 115.04546 * 359.97438 * 20 19 18 22 22 F 1.35094 * 124.54043 * 179.97438 * 21 20 19 23 23 S 1.70612 * 110.91614 * 359.76746 * 21 20 19 24 24 C 1.52909 * 86.78501 * 24.73264 * 13 12 10 25 25 C 1.52910 * 121.13680 * 100.81909 * 24 13 12 26 26 C 1.53949 * 86.78077 * 100.82535 * 25 24 13 27 27 C 1.52905 * 121.13655 * 209.38636 * 24 13 12 28 28 H 0.97009 * 120.00173 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99527 * 0.02562 * 9 7 2 30 30 H 1.09001 * 113.57949 * 204.33552 * 12 10 9 31 31 H 1.08996 * 113.58143 * 335.13213 * 12 10 9 32 32 H 0.96996 * 120.00440 * 72.22910 * 15 13 12 33 33 H 1.08003 * 123.33329 * 359.94044 * 19 18 16 34 34 H 1.07997 * 122.47971 * 179.97438 * 20 19 18 35 35 H 1.09006 * 113.66074 * 215.29190 * 25 24 13 36 36 H 1.08994 * 113.66448 * 346.35155 * 25 24 13 37 37 H 1.09009 * 113.57633 * 270.12923 * 26 25 24 38 38 H 1.09000 * 113.65567 * 139.34741 * 26 25 24 39 39 H 1.08990 * 113.66878 * 13.64950 * 27 24 13 40 40 H 1.09000 * 113.66430 * 144.61574 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0668 -3.5649 -0.4041 12 6 1.9943 -4.4082 1.3406 13 6 0.7251 -5.0994 0.8101 14 1 0.6691 -6.1598 1.0560 15 7 -0.5121 -4.3773 1.1170 16 6 -1.3617 -4.8603 2.0452 17 8 -1.1013 -5.8967 2.6281 18 6 -2.5972 -4.1386 2.3521 19 6 -3.5342 -4.5255 3.2698 20 6 -4.5986 -3.6620 3.3577 21 6 -4.5376 -2.6000 2.5393 22 9 -5.4786 -1.6333 2.4676 23 16 -3.1099 -2.6314 1.6059 24 6 1.2651 -4.8227 -0.5935 25 6 1.9573 -5.9187 -1.4046 26 6 0.6286 -6.0732 -2.1667 27 6 0.3201 -4.6159 -1.7776 28 1 -0.4851 0.8401 -0.0004 29 1 0.3554 -2.3881 -0.0005 30 1 2.8292 -5.0910 1.4981 31 1 1.8115 -3.7580 2.1960 32 1 -0.7198 -3.5516 0.6523 33 1 -3.4463 -5.4218 3.8660 34 1 -5.4235 -3.8254 4.0352 35 1 2.7767 -5.5533 -2.0237 36 1 2.2278 -6.7945 -0.8150 37 1 -0.0504 -6.7976 -1.7169 38 1 0.7543 -6.2208 -3.2393 39 1 -0.7171 -4.4511 -1.4861 40 1 0.6786 -3.8833 -2.5007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078829630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:37 Heat of formation + Delta-G solvation = 18.112770 kcal Electronic energy + Delta-G solvation = -25505.623044 eV Core-core repulsion = 21749.754783 eV Total energy + Delta-G solvation = -3755.868261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.08640 -40.71057 -39.01942 -37.25315 -35.31590 -33.70965 -32.41389 -30.04657 -29.19450 -25.58389 -25.31110 -24.41385 -24.04779 -22.95484 -21.19710 -20.16158 -19.86332 -19.08912 -17.88678 -17.22560 -16.50419 -16.30727 -15.99346 -15.48995 -15.30443 -14.75345 -14.73134 -14.44923 -14.39336 -13.97502 -13.53197 -13.09508 -12.90064 -12.55445 -12.45856 -12.12107 -12.05501 -11.93271 -11.56454 -11.45232 -10.97079 -10.91008 -10.83862 -10.69767 -10.28575 -10.13390 -9.98102 -9.83970 -9.68883 -9.39183 -8.91179 -8.84071 -8.71174 -8.54901 -7.09193 -5.89762 -3.18216 0.35398 1.06067 1.68677 2.19961 3.24021 3.32222 3.38143 3.43533 3.43847 4.26449 4.46638 4.70922 4.81929 4.94372 5.01577 5.12221 5.20701 5.27585 5.29410 5.36732 5.58903 5.71089 5.82196 5.84023 5.86442 5.97546 6.00987 6.07639 6.10891 6.13644 6.18630 6.30182 6.37876 6.56613 6.64704 6.71071 6.88627 7.01810 7.62447 7.72497 8.28331 8.35225 9.40004 9.93664 10.27560 11.32638 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.005802 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.896989 B = 4824.475691 C = 7104.288453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.700 5.700 10 C 0.179 3.821 11 H 0.068 0.932 12 C -0.186 4.186 13 C 0.151 3.849 14 H 0.095 0.905 15 N -0.694 5.694 16 C 0.595 3.405 17 O -0.538 6.538 18 C -0.269 4.269 19 C -0.043 4.043 20 C -0.189 4.189 21 C -0.036 4.036 22 F -0.102 7.102 23 S 0.285 5.715 24 C -0.134 4.134 25 C -0.103 4.103 26 C -0.142 4.142 27 C -0.116 4.116 28 H 0.257 0.743 29 H 0.377 0.623 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.406 0.594 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 -10.133 0.868 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.339 5.339 10 C 0.066 3.934 11 H 0.086 0.914 12 C -0.228 4.228 13 C 0.045 3.955 14 H 0.113 0.887 15 N -0.345 5.345 16 C 0.381 3.619 17 O -0.417 6.417 18 C -0.391 4.391 19 C -0.076 4.076 20 C -0.222 4.222 21 C -0.174 4.174 22 F -0.081 7.081 23 S 0.551 5.449 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.179 4.179 27 C -0.154 4.154 28 H 0.067 0.933 29 H 0.212 0.788 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.244 0.756 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.752 -9.634 0.138 10.743 hybrid contribution -0.950 0.793 1.074 1.639 sum -5.702 -8.841 1.212 10.590 Atomic orbital electron populations 1.69592 1.05009 1.26063 1.57208 1.24707 0.95581 0.97647 1.02485 0.86254 0.78566 0.83385 0.77859 1.21245 1.21683 1.21283 1.19220 0.91151 0.83693 1.43397 0.90916 1.42084 1.05130 0.99486 1.87229 1.21067 0.95020 0.85086 0.92180 0.91408 1.24313 0.96228 1.00294 1.01972 1.21477 0.83429 0.96039 0.94513 0.88665 1.45657 1.21105 1.27515 1.40255 1.16741 0.81491 0.84068 0.79606 1.90797 1.75781 1.23622 1.51510 1.24667 1.02879 1.02627 1.08907 1.20374 0.90803 0.99971 0.96438 1.20209 1.02820 0.95318 1.03890 1.22232 0.95440 0.92879 1.06880 1.91521 1.61381 1.59880 1.95283 1.84531 1.08234 1.17007 1.35140 1.23476 0.98683 0.98681 0.92816 1.22475 0.96798 0.97145 0.97649 1.22865 0.97660 0.97679 0.99697 1.22516 0.99020 0.96183 0.97675 0.93277 0.78763 0.90196 0.90868 0.75592 0.82205 0.82844 0.89562 0.91571 0.90746 0.91862 0.92168 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.45 13.06 55.49 0.72 -24.72 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.28 9.97 -15.05 -0.15 -6.43 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.70 -15.94 4.98 -52.99 -0.26 -16.20 16 10 C 0.18 3.34 4.36 -67.48 -0.29 3.04 16 11 H 0.07 1.27 8.10 -51.93 -0.42 0.84 16 12 C -0.19 -3.23 7.69 -25.75 -0.20 -3.42 16 13 C 0.15 2.49 4.12 -67.48 -0.28 2.21 16 14 H 0.10 1.56 7.46 -51.93 -0.39 1.17 16 15 N -0.69 -12.02 4.69 -54.78 -0.26 -12.28 16 16 C 0.59 10.38 7.77 -13.00 -0.10 10.28 16 17 O -0.54 -10.38 16.44 5.16 0.08 -10.30 16 18 C -0.27 -4.15 6.44 -36.87 -0.24 -4.38 16 19 C -0.04 -0.57 10.00 -40.45 -0.40 -0.97 16 20 C -0.19 -2.30 10.16 -41.33 -0.42 -2.72 16 21 C -0.04 -0.49 8.10 29.31 0.24 -0.26 16 22 F -0.10 -1.43 17.32 2.25 0.04 -1.39 16 23 S 0.28 4.29 22.14 -107.50 -2.38 1.91 16 24 C -0.13 -2.08 0.78 -154.71 -0.12 -2.21 16 25 C -0.10 -1.30 7.84 -26.28 -0.21 -1.51 16 26 C -0.14 -1.77 8.08 -25.75 -0.21 -1.98 16 27 C -0.12 -1.77 7.27 -26.28 -0.19 -1.97 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.38 8.81 5.34 -40.82 -0.22 8.59 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 32 H 0.41 7.38 5.05 -40.82 -0.21 7.18 16 33 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -28.27 350.37 -9.44 -37.71 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -4.98 Total: 14.28 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.67 Total: -10.61 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.20 Total: -53.21 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -2.38 Total: 1.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.27 -9.44 -37.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078829630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.826 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds