Wall clock time and date at job start Tue Mar 31 2020 13:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48501 * 109.47078 * 239.99958 * 3 2 1 5 5 H 1.48497 * 109.46945 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46824 * 119.99769 * 3 2 1 7 7 C 1.38814 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.95638 * 336.40672 * 10 9 7 12 12 C 1.53957 * 113.65902 * 107.81807 * 10 9 7 13 13 C 1.53948 * 87.29686 * 89.73656 * 12 10 9 14 14 H 1.08998 * 113.66676 * 139.20284 * 13 12 10 15 15 N 1.46505 * 113.74574 * 270.25087 * 13 12 10 16 16 C 1.34782 * 119.99630 * 252.22883 * 15 13 12 17 17 O 1.21734 * 120.00341 * 359.97438 * 16 15 13 18 18 C 1.46345 * 119.99525 * 179.97438 * 16 15 13 19 19 C 1.36738 * 125.43270 * 180.02562 * 18 16 15 20 20 C 1.37341 * 113.33145 * 179.97438 * 19 18 16 21 21 C 1.34209 * 115.04546 * 359.97438 * 20 19 18 22 22 F 1.35094 * 124.54043 * 179.97438 * 21 20 19 23 23 S 1.70612 * 110.91614 * 359.76746 * 21 20 19 24 24 C 1.52909 * 86.78501 * 24.73264 * 13 12 10 25 25 C 1.52910 * 121.13680 * 100.81909 * 24 13 12 26 26 C 1.53949 * 86.78077 * 100.82535 * 25 24 13 27 27 C 1.52905 * 121.13655 * 209.38636 * 24 13 12 28 28 H 0.97009 * 120.00173 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99527 * 0.02562 * 9 7 2 30 30 H 1.09001 * 113.57949 * 204.33552 * 12 10 9 31 31 H 1.08996 * 113.58143 * 335.13213 * 12 10 9 32 32 H 0.96996 * 120.00440 * 72.22910 * 15 13 12 33 33 H 1.08003 * 123.33329 * 359.94044 * 19 18 16 34 34 H 1.07997 * 122.47971 * 179.97438 * 20 19 18 35 35 H 1.09006 * 113.66074 * 215.29190 * 25 24 13 36 36 H 1.08994 * 113.66448 * 346.35155 * 25 24 13 37 37 H 1.09009 * 113.57633 * 270.12923 * 26 25 24 38 38 H 1.09000 * 113.65567 * 139.34741 * 26 25 24 39 39 H 1.08990 * 113.66878 * 13.64950 * 27 24 13 40 40 H 1.09000 * 113.66430 * 144.61574 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0668 -3.5649 -0.4041 12 6 1.9943 -4.4082 1.3406 13 6 0.7251 -5.0994 0.8101 14 1 0.6691 -6.1598 1.0560 15 7 -0.5121 -4.3773 1.1170 16 6 -1.3617 -4.8603 2.0452 17 8 -1.1013 -5.8967 2.6281 18 6 -2.5972 -4.1386 2.3521 19 6 -3.5342 -4.5255 3.2698 20 6 -4.5986 -3.6620 3.3577 21 6 -4.5376 -2.6000 2.5393 22 9 -5.4786 -1.6333 2.4676 23 16 -3.1099 -2.6314 1.6059 24 6 1.2651 -4.8227 -0.5935 25 6 1.9573 -5.9187 -1.4046 26 6 0.6286 -6.0732 -2.1667 27 6 0.3201 -4.6159 -1.7776 28 1 -0.4851 0.8401 -0.0004 29 1 0.3554 -2.3881 -0.0005 30 1 2.8292 -5.0910 1.4981 31 1 1.8115 -3.7580 2.1960 32 1 -0.7198 -3.5516 0.6523 33 1 -3.4463 -5.4218 3.8660 34 1 -5.4235 -3.8254 4.0352 35 1 2.7767 -5.5533 -2.0237 36 1 2.2278 -6.7945 -0.8150 37 1 -0.0504 -6.7976 -1.7169 38 1 0.7543 -6.2208 -3.2393 39 1 -0.7171 -4.4511 -1.4861 40 1 0.6786 -3.8833 -2.5007 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078829630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:37 Heat of formation + Delta-G solvation = 2.727080 kcal Electronic energy + Delta-G solvation = -25506.290217 eV Core-core repulsion = 21749.754783 eV Total energy + Delta-G solvation = -3756.535435 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.20455 -42.03800 -40.30952 -38.39194 -36.69248 -35.37270 -33.95872 -31.78654 -30.43067 -26.80199 -26.70960 -25.79520 -25.34411 -24.44268 -22.51438 -21.44968 -21.07375 -20.33673 -19.33820 -18.85480 -17.79069 -17.49044 -17.11101 -16.81879 -16.67443 -16.30289 -16.01275 -15.87467 -15.56244 -15.47813 -14.91184 -14.77249 -14.15725 -13.92978 -13.62209 -13.28158 -13.25027 -13.13429 -13.11706 -12.86005 -12.71029 -12.53305 -12.19832 -11.97123 -11.93484 -11.81370 -11.38731 -11.27451 -11.04795 -10.81025 -10.65125 -10.10875 -9.86375 -9.77891 -8.95332 -7.91315 -5.18360 -0.79064 -0.08112 0.56229 1.11358 1.50123 1.50807 1.56400 1.94347 2.03524 2.57555 3.18303 3.38473 3.41297 3.55191 3.69879 3.82761 3.94356 4.03852 4.15122 4.20836 4.25905 4.30355 4.55160 4.65853 4.70577 4.77342 4.83285 4.89590 4.96855 5.02999 5.09702 5.13880 5.14381 5.19765 5.22234 5.50008 5.55710 5.62663 5.65282 6.30033 6.35460 6.97022 7.37889 8.10196 8.34412 9.30392 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.005802 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.896989 B = 4824.475691 C = 7104.288453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.062 4.062 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.710 5.710 10 C 0.162 3.838 11 H 0.068 0.932 12 C -0.178 4.178 13 C 0.150 3.850 14 H 0.103 0.897 15 N -0.697 5.697 16 C 0.594 3.406 17 O -0.560 6.560 18 C -0.289 4.289 19 C -0.026 4.026 20 C -0.172 4.172 21 C -0.036 4.036 22 F -0.103 7.103 23 S 0.240 5.760 24 C -0.125 4.125 25 C -0.092 4.092 26 C -0.127 4.127 27 C -0.125 4.125 28 H 0.251 0.749 29 H 0.372 0.628 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.400 0.600 33 H 0.180 0.820 34 H 0.190 0.810 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 -11.810 1.132 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.255 4.255 3 Si 0.794 3.206 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.051 3.949 11 H 0.086 0.914 12 C -0.220 4.220 13 C 0.045 3.955 14 H 0.121 0.879 15 N -0.347 5.347 16 C 0.381 3.619 17 O -0.442 6.442 18 C -0.410 4.410 19 C -0.059 4.059 20 C -0.204 4.204 21 C -0.174 4.174 22 F -0.082 7.082 23 S 0.506 5.494 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.164 4.164 27 C -0.163 4.163 28 H 0.060 0.940 29 H 0.206 0.794 30 H 0.126 0.874 31 H 0.062 0.938 32 H 0.238 0.762 33 H 0.198 0.802 34 H 0.208 0.792 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.706 -11.339 0.391 12.283 hybrid contribution -0.970 1.283 1.036 1.913 sum -5.676 -10.056 1.427 11.636 Atomic orbital electron populations 1.69723 1.05911 1.25985 1.58745 1.25354 0.96375 1.00234 1.03564 0.85368 0.77312 0.80121 0.77798 1.20690 1.22395 1.21180 1.19528 0.91424 0.84946 1.41764 0.90816 1.42176 1.05033 1.00246 1.87482 1.21314 0.95175 0.84651 0.93723 0.91427 1.24242 0.97857 1.00127 0.99743 1.21538 0.82829 0.96100 0.95048 0.87905 1.45754 1.21449 1.27304 1.40209 1.16987 0.81934 0.83863 0.79104 1.90769 1.76525 1.24565 1.52335 1.24542 1.03091 1.02852 1.10526 1.20714 0.89915 1.00226 0.95012 1.20523 1.03071 0.93691 1.03116 1.22274 0.94760 0.93398 1.06966 1.91520 1.61236 1.60114 1.95301 1.84707 1.10084 1.17946 1.36656 1.23425 0.98582 0.98137 0.92599 1.22515 0.96997 0.96421 0.97028 1.22801 0.97367 0.95293 1.00958 1.22523 0.98223 0.98131 0.97388 0.93987 0.79391 0.87367 0.93838 0.76206 0.80238 0.79238 0.88612 0.89547 0.90067 0.90057 0.93298 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.61 13.06 21.65 0.28 -53.33 16 2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 3 Si 0.96 44.52 29.55 68.60 2.03 46.54 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 7 C -0.24 -12.82 9.97 84.03 0.84 -11.98 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 N -0.71 -33.04 4.98 -321.55 -1.60 -34.64 16 10 C 0.16 6.02 4.36 45.29 0.20 6.22 16 11 H 0.07 2.49 8.10 -2.39 -0.02 2.47 16 12 C -0.18 -6.09 7.69 31.23 0.24 -5.85 16 13 C 0.15 4.86 4.12 45.28 0.19 5.05 16 14 H 0.10 3.21 7.46 -2.39 -0.02 3.19 16 15 N -0.70 -24.54 4.69 -445.41 -2.09 -26.62 16 16 C 0.59 20.78 7.77 86.35 0.67 21.45 16 17 O -0.56 -21.34 16.44 -4.46 -0.07 -21.42 16 18 C -0.29 -8.84 6.44 24.03 0.15 -8.69 16 19 C -0.03 -0.62 10.00 21.71 0.22 -0.40 16 20 C -0.17 -3.72 10.16 21.14 0.21 -3.51 16 21 C -0.04 -0.95 8.10 66.90 0.54 -0.40 16 22 F -0.10 -2.79 17.32 44.97 0.78 -2.01 16 23 S 0.24 7.41 22.14 -56.49 -1.25 6.16 16 24 C -0.13 -3.77 0.78 -52.31 -0.04 -3.81 16 25 C -0.09 -2.07 7.84 30.88 0.24 -1.83 16 26 C -0.13 -2.86 8.08 31.23 0.25 -2.61 16 27 C -0.12 -3.76 7.27 30.88 0.22 -3.53 16 28 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 29 H 0.37 18.00 5.34 -92.71 -0.49 17.51 16 30 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.40 15.16 5.05 -92.71 -0.47 14.69 16 33 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 34 H 0.19 2.76 8.06 -2.91 -0.02 2.73 16 35 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.56 7.58 -2.39 -0.02 1.54 16 40 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -61.32 350.37 2.61 -58.72 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: 0.13 Total: 39.37 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: 4.41 Total: -12.77 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -3.41 Total: -114.60 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 7.41 SS G_CDS: -1.25 Total: 6.16 kcal Total: -61.32 2.61 -58.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078829630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.442 kcal (2) G-P(sol) polarization free energy of solvation -61.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds