Wall clock time and date at job start Tue Mar 31 2020 13:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31932 * 119.01814 * 2 1 4 4 C 1.32137 * 121.05399 * 180.02562 * 3 2 1 5 5 C 1.38985 * 119.12536 * 359.71411 * 4 3 2 6 6 Cl 1.73605 * 120.88662 * 180.29707 * 5 4 3 7 7 C 1.39634 * 118.22817 * 0.54905 * 5 4 3 8 8 C 1.48370 * 120.56081 * 179.73474 * 7 5 4 9 9 O 1.21477 * 120.00518 * 5.94909 * 8 7 5 10 10 N 1.34779 * 119.99256 * 185.95051 * 8 7 5 11 11 C 1.46498 * 120.00364 * 357.31568 * 10 8 7 12 12 C 1.46507 * 119.99317 * 177.31523 * 10 8 7 13 13 C 1.53003 * 109.46992 * 95.59088 * 12 10 8 14 14 H 1.08998 * 113.04202 * 65.46988 * 13 12 10 15 15 C 1.53945 * 113.76590 * 293.71964 * 13 12 10 16 16 C 1.53952 * 86.28788 * 222.09071 * 15 13 12 17 17 N 1.47579 * 86.23854 * 23.55377 * 16 15 13 18 18 C 1.36942 * 134.49271 * 155.42944 * 17 16 15 19 19 H 1.07997 * 119.99623 * 185.16489 * 18 17 16 20 20 C 1.38808 * 120.00083 * 5.16463 * 18 17 16 21 21 N 1.31618 * 119.99780 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00077 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47211 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47180 * 120.00018 * 22 20 18 25 25 H 1.48499 * 109.46949 * 239.99945 * 22 20 18 26 26 N 1.31521 * 119.01845 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.46762 * 269.98136 * 1 2 3 28 28 H 1.09002 * 109.46679 * 29.98432 * 1 2 3 29 29 H 1.08999 * 109.47127 * 149.97471 * 1 2 3 30 30 H 1.08003 * 120.43552 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46808 * 275.98686 * 11 10 8 32 32 H 1.08995 * 109.47500 * 35.99176 * 11 10 8 33 33 H 1.09001 * 109.46981 * 155.98956 * 11 10 8 34 34 H 1.08991 * 109.47269 * 335.58684 * 12 10 8 35 35 H 1.09002 * 109.46620 * 215.58591 * 12 10 8 36 36 H 1.08995 * 113.74556 * 107.74747 * 15 13 12 37 37 H 1.09003 * 113.83960 * 336.44915 * 15 13 12 38 38 H 1.09002 * 113.76435 * 137.90452 * 16 15 13 39 39 H 1.08994 * 113.77280 * 269.19360 * 16 15 13 40 40 H 0.97005 * 119.99907 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1867 0.0113 0.0050 6 17 5.9227 0.0197 0.0123 7 6 3.4758 -1.1904 -0.0009 8 6 4.1912 -2.4902 -0.0013 9 8 5.4003 -2.5181 0.1125 10 7 3.4995 -3.6400 -0.1281 11 6 2.0369 -3.6102 -0.2062 12 6 4.2104 -4.9196 -0.1877 13 6 4.2566 -5.5429 1.2089 14 1 3.2720 -5.8207 1.5849 15 6 5.1031 -4.7445 2.2169 16 6 5.6427 -6.1065 2.6903 17 7 5.2698 -6.6093 1.3538 18 6 5.6933 -7.6463 0.5660 19 1 5.3052 -7.7568 -0.4357 20 6 6.6215 -8.5552 1.0550 21 7 7.0949 -8.4201 2.2756 22 14 7.1998 -9.9693 -0.0199 23 1 6.5218 -9.8977 -1.3391 24 1 8.6693 -9.8760 -0.2123 25 1 6.8676 -11.2587 0.6375 26 7 2.1450 -1.1501 -0.0005 27 1 -0.3632 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 3.9812 2.1507 -0.0009 31 1 1.6200 -3.5744 0.8003 32 1 1.7206 -2.7277 -0.7621 33 1 1.6819 -4.5065 -0.7149 34 1 5.2265 -4.7544 -0.5457 35 1 3.6900 -5.5929 -0.8689 36 1 4.5125 -4.2212 2.9687 37 1 5.8587 -4.1104 1.7529 38 1 6.7164 -6.1124 2.8780 39 1 5.0664 -6.5490 3.5027 40 1 7.7433 -9.0555 2.6175 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085854252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:59 Heat of formation + Delta-G solvation = 76.247377 kcal Electronic energy + Delta-G solvation = -25351.162907 eV Core-core repulsion = 21615.691807 eV Total energy + Delta-G solvation = -3735.471100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.57912 -40.86404 -39.37853 -37.83409 -36.64525 -35.13642 -34.20838 -34.06535 -30.14631 -29.83792 -29.37332 -27.86582 -26.42360 -25.28487 -24.66022 -23.58397 -21.24966 -20.73579 -19.40336 -18.71643 -18.29192 -17.47297 -17.30831 -17.11007 -16.78687 -16.22367 -16.04921 -15.79752 -15.20972 -15.04231 -14.64951 -14.19303 -14.08324 -13.94055 -13.68044 -13.41707 -13.28949 -13.18834 -12.96597 -12.83025 -12.59257 -12.54971 -12.50392 -12.26835 -12.21804 -11.95675 -11.82316 -11.57830 -11.31992 -11.23137 -10.86062 -10.33496 -10.12070 -9.63960 -8.88779 -7.88842 -5.21939 -0.86352 -0.42137 0.84668 1.44845 1.46862 1.56245 1.57750 1.68486 2.46132 2.47244 2.59942 2.83676 3.08926 3.32836 3.38485 3.44210 3.79685 3.89767 4.16321 4.25730 4.32758 4.45086 4.46869 4.69599 4.72286 4.78185 4.83047 4.84830 4.90848 5.00414 5.06389 5.16069 5.23533 5.33449 5.44417 5.50670 5.54722 5.72196 5.93697 6.26420 6.67424 6.92296 6.96880 7.62469 8.59040 9.29507 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.020573 B = 0.003293 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.701640 B = 8501.964810 C = 9177.511953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.309 3.691 3 N -0.498 5.498 4 C 0.182 3.818 5 C -0.121 4.121 6 Cl -0.012 7.012 7 C 0.139 3.861 8 C 0.549 3.451 9 O -0.530 6.530 10 N -0.582 5.582 11 C 0.072 3.928 12 C 0.130 3.870 13 C 0.137 3.863 14 H 0.059 0.941 15 C -0.134 4.134 16 C 0.161 3.839 17 N -0.627 5.627 18 C -0.226 4.226 19 H 0.089 0.911 20 C -0.072 4.072 21 N -0.957 5.957 22 Si 0.978 3.022 23 H -0.261 1.261 24 H -0.296 1.296 25 H -0.293 1.293 26 N -0.476 5.476 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.217 0.783 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.019 0.981 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.087 22.370 -6.301 28.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.043 3.957 3 N -0.212 5.212 4 C 0.013 3.987 5 C -0.154 4.154 6 Cl 0.017 6.983 7 C -0.009 4.009 8 C 0.335 3.665 9 O -0.405 6.405 10 N -0.313 5.313 11 C -0.070 4.070 12 C 0.006 3.994 13 C 0.030 3.970 14 H 0.076 0.924 15 C -0.172 4.172 16 C 0.035 3.965 17 N -0.354 5.354 18 C -0.354 4.354 19 H 0.107 0.893 20 C -0.265 4.265 21 N -0.607 5.607 22 Si 0.806 3.194 23 H -0.185 1.185 24 H -0.223 1.223 25 H -0.220 1.220 26 N -0.194 5.194 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.233 0.767 31 H 0.080 0.920 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.037 0.963 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.134 22.007 -6.344 28.016 hybrid contribution 1.925 -1.281 0.019 2.312 sum -14.209 20.726 -6.325 25.913 Atomic orbital electron populations 1.20831 0.81814 1.06001 1.05628 1.24359 1.00347 0.82561 0.88414 1.68455 1.08964 1.30457 1.13369 1.23936 0.89057 0.97725 0.88015 1.23013 0.89571 0.96409 1.06418 1.98454 1.05157 1.98619 1.96022 1.21456 0.90514 0.93442 0.95455 1.18057 0.86470 0.83463 0.78555 1.90889 1.13896 1.86433 1.49303 1.47723 1.09262 1.04720 1.69602 1.22597 0.76130 1.04859 1.03367 1.21534 0.97499 0.83087 0.97282 1.22672 0.92837 0.87112 0.94372 0.92402 1.23537 0.99270 0.96016 0.98374 1.22013 0.97541 0.89469 0.87479 1.46343 1.40604 1.31977 1.16459 1.19472 1.18955 1.01579 0.95429 0.89301 1.25672 1.00982 1.01851 0.97966 1.70051 1.34460 1.38731 1.17432 0.85011 0.77303 0.78697 0.78357 1.18468 1.22334 1.21973 1.68906 1.06294 1.30112 1.14113 0.87717 0.87883 0.87801 0.76689 0.91966 0.86769 0.90495 0.91793 0.89443 0.91544 0.90850 0.95126 0.96338 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.31 71.24 0.73 0.11 16 2 C 0.31 4.87 7.64 138.79 1.06 5.93 16 3 N -0.50 -8.11 10.31 -187.76 -1.94 -10.04 16 4 C 0.18 2.88 11.14 84.83 0.94 3.82 16 5 C -0.12 -2.68 6.40 22.79 0.15 -2.54 16 6 Cl -0.01 -0.29 26.27 -2.72 -0.07 -0.36 16 7 C 0.14 3.47 6.66 41.98 0.28 3.75 16 8 C 0.55 17.20 7.30 86.94 0.63 17.84 16 9 O -0.53 -20.10 12.00 -3.64 -0.04 -20.14 16 10 N -0.58 -16.98 2.80 -849.60 -2.38 -19.36 16 11 C 0.07 1.48 9.43 127.77 1.21 2.69 16 12 C 0.13 4.64 5.42 86.38 0.47 5.11 16 13 C 0.14 5.65 4.58 45.05 0.21 5.85 16 14 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.13 -5.68 7.25 31.25 0.23 -5.45 16 16 C 0.16 8.32 7.38 86.48 0.64 8.96 16 17 N -0.63 -33.32 3.58 -690.93 -2.48 -35.79 16 18 C -0.23 -12.89 10.52 84.03 0.88 -12.01 16 19 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 20 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 21 N -0.96 -60.29 11.52 21.65 0.25 -60.04 16 22 Si 0.98 46.97 29.55 68.60 2.03 49.00 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 26 N -0.48 -9.44 6.09 -177.04 -1.08 -10.51 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.22 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 2.09 5.18 -2.88 -0.01 2.08 16 33 H 0.08 1.38 7.89 -2.39 -0.02 1.36 16 34 H 0.06 2.71 7.30 -2.39 -0.02 2.69 16 35 H 0.09 2.84 7.95 -2.39 -0.02 2.82 16 36 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.07 3.36 6.53 -2.39 -0.02 3.34 16 38 H 0.03 1.77 7.40 -2.39 -0.02 1.76 16 39 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -74.72 346.43 3.25 -71.47 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 1.06 Total: 5.52 kcal Atomic # 6 Polarization: 22.38 SS G_CDS: 7.90 Total: 30.28 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -7.62 Total: -135.76 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.04 Total: -20.14 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.07 Total: -0.36 kcal Total: -74.72 3.25 -71.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085854252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.717 kcal (2) G-P(sol) polarization free energy of solvation -74.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds