Wall clock time and date at job start Tue Mar 31 2020 14:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31932 * 119.01835 * 2 1 4 4 C 1.32130 * 121.05388 * 180.02562 * 3 2 1 5 5 C 1.38983 * 119.12723 * 0.02562 * 4 3 2 6 6 Cl 1.73609 * 120.88545 * 179.97438 * 5 4 3 7 7 C 1.39633 * 118.22826 * 359.97438 * 5 4 3 8 8 C 1.48373 * 120.56242 * 180.02562 * 7 5 4 9 9 O 1.21488 * 119.99696 * 353.30712 * 8 7 5 10 10 N 1.34775 * 119.99826 * 173.30089 * 8 7 5 11 11 C 1.46498 * 120.00031 * 2.61495 * 10 8 7 12 12 C 1.46499 * 119.99937 * 182.61134 * 10 8 7 13 13 C 1.52998 * 109.47166 * 84.35713 * 12 10 8 14 14 H 1.08999 * 112.96319 * 290.46165 * 13 12 10 15 15 C 1.53949 * 113.77097 * 62.13554 * 13 12 10 16 16 C 1.53942 * 86.28982 * 137.90770 * 15 13 12 17 17 N 1.47574 * 113.77225 * 158.77706 * 13 12 10 18 18 C 1.36942 * 134.49100 * 41.06910 * 17 13 12 19 19 H 1.07995 * 119.99724 * 337.70860 * 18 17 13 20 20 C 1.38812 * 120.00182 * 157.70059 * 18 17 13 21 21 N 1.31618 * 120.00100 * 170.78826 * 20 18 17 22 22 Si 1.86799 * 119.99841 * 350.79688 * 20 18 17 23 23 H 1.48496 * 109.47757 * 86.03987 * 22 20 18 24 24 H 1.48507 * 109.46935 * 206.03912 * 22 20 18 25 25 H 1.48498 * 109.47355 * 326.03560 * 22 20 18 26 26 N 1.31519 * 119.01789 * 179.73542 * 2 1 3 27 27 H 1.09007 * 109.46788 * 89.99695 * 1 2 3 28 28 H 1.09000 * 109.47105 * 330.00147 * 1 2 3 29 29 H 1.08999 * 109.47236 * 209.99543 * 1 2 3 30 30 H 1.08005 * 120.43770 * 180.02562 * 4 3 2 31 31 H 1.09003 * 109.47104 * 83.86744 * 11 10 8 32 32 H 1.09004 * 109.47379 * 203.87055 * 11 10 8 33 33 H 1.08999 * 109.47211 * 323.87231 * 11 10 8 34 34 H 1.08996 * 109.47092 * 204.35614 * 12 10 8 35 35 H 1.09001 * 109.47420 * 324.35911 * 12 10 8 36 36 H 1.09004 * 113.74198 * 252.26298 * 15 13 12 37 37 H 1.08999 * 113.73949 * 23.45660 * 15 13 12 38 38 H 1.09006 * 113.76796 * 90.70071 * 16 15 13 39 39 H 1.08995 * 113.76739 * 221.97814 * 16 15 13 40 40 H 0.96998 * 119.99982 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2006 -0.0005 5 6 4.1867 0.0114 -0.0016 6 17 5.9228 0.0198 -0.0030 7 6 3.4757 -1.1904 -0.0015 8 6 4.1912 -2.4903 -0.0021 9 8 5.3995 -2.5185 -0.1252 10 7 3.5006 -3.6396 0.1341 11 6 2.0387 -3.6094 0.2251 12 6 4.2118 -4.9191 0.1910 13 6 4.6744 -5.1821 1.6255 14 1 5.4698 -4.5093 1.9459 15 6 3.5204 -5.3045 2.6371 16 6 4.3049 -6.4851 3.2376 17 7 4.9467 -6.6040 1.9115 18 6 5.5505 -7.6227 1.2237 19 1 5.6272 -7.5764 0.1475 20 6 6.0642 -8.7146 1.9099 21 7 6.4794 -9.7728 1.2465 22 14 6.1657 -8.6821 3.7748 23 1 4.8741 -9.1371 4.3491 24 1 7.2541 -9.5857 4.2271 25 1 6.4500 -7.2979 4.2312 26 7 2.1450 -1.1501 0.0053 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3634 -0.8900 0.5138 30 1 3.9812 2.1507 -0.0001 31 1 1.6129 -3.5739 -0.7776 32 1 1.6879 -4.5054 0.7374 33 1 1.7276 -2.7264 0.7834 34 1 3.5449 -5.7200 -0.1282 35 1 5.0783 -4.8829 -0.4692 36 1 3.4320 -4.4497 3.3077 37 1 2.5702 -5.5908 2.1863 38 1 4.9927 -6.1966 4.0324 39 1 3.6800 -7.3373 3.5045 40 1 6.8380 -10.5359 1.7260 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085854253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:03 Heat of formation + Delta-G solvation = 79.165509 kcal Electronic energy + Delta-G solvation = -25326.021835 eV Core-core repulsion = 21590.677275 eV Total energy + Delta-G solvation = -3735.344560 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.59797 -40.92508 -39.68239 -37.85848 -36.66951 -35.15690 -34.37558 -34.09488 -30.57738 -30.13701 -29.37939 -27.90056 -26.51199 -25.17771 -24.68067 -23.74313 -21.40301 -20.86590 -19.43585 -18.76565 -18.35786 -17.54577 -17.38353 -17.15936 -16.98790 -16.46321 -16.12038 -15.63128 -15.39670 -14.96818 -14.71118 -14.53286 -14.29018 -13.98658 -13.79261 -13.71653 -13.51304 -13.26297 -13.16059 -12.84892 -12.80128 -12.61107 -12.48874 -12.24883 -12.03973 -11.95765 -11.81699 -11.75083 -11.32944 -11.27599 -10.97160 -10.35805 -10.15154 -9.69580 -9.04216 -8.15665 -5.50190 -0.88438 -0.43307 0.82442 1.28712 1.35802 1.42545 1.53233 1.63997 2.40981 2.43750 2.55363 2.82049 2.95013 3.14281 3.17449 3.36628 3.68495 3.79421 4.08115 4.18568 4.27154 4.36357 4.45784 4.56377 4.69458 4.72275 4.78486 4.81526 4.84545 4.89697 4.91490 4.98084 5.13381 5.27528 5.35817 5.43792 5.49519 5.56269 6.16484 6.22993 6.52721 6.66051 6.91022 7.43689 8.26729 9.05512 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.003386 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.156841 B = 8267.415661 C = 8969.694981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.310 3.690 3 N -0.497 5.497 4 C 0.182 3.818 5 C -0.122 4.122 6 Cl -0.013 7.013 7 C 0.139 3.861 8 C 0.548 3.452 9 O -0.539 6.539 10 N -0.578 5.578 11 C 0.071 3.929 12 C 0.133 3.867 13 C 0.127 3.873 14 H 0.036 0.964 15 C -0.111 4.111 16 C 0.086 3.914 17 N -0.640 5.640 18 C -0.216 4.216 19 H 0.063 0.937 20 C -0.044 4.044 21 N -0.969 5.969 22 Si 0.948 3.052 23 H -0.269 1.269 24 H -0.307 1.307 25 H -0.259 1.259 26 N -0.474 5.474 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.217 0.783 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.355 26.236 -0.493 30.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.212 5.212 4 C 0.013 3.987 5 C -0.155 4.155 6 Cl 0.016 6.984 7 C -0.008 4.008 8 C 0.333 3.667 9 O -0.415 6.415 10 N -0.309 5.309 11 C -0.070 4.070 12 C 0.009 3.991 13 C 0.020 3.980 14 H 0.053 0.947 15 C -0.149 4.149 16 C -0.038 4.038 17 N -0.368 5.368 18 C -0.344 4.344 19 H 0.081 0.919 20 C -0.238 4.238 21 N -0.617 5.617 22 Si 0.776 3.224 23 H -0.194 1.194 24 H -0.236 1.236 25 H -0.184 1.184 26 N -0.193 5.193 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.233 0.767 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.415 25.835 -0.654 30.616 hybrid contribution 2.185 -0.794 0.531 2.385 sum -14.230 25.041 -0.123 28.802 Atomic orbital electron populations 1.20842 0.81762 1.06048 1.05663 1.24366 1.00352 0.82523 0.88314 1.68458 1.08937 1.30485 1.13322 1.23933 0.89060 0.97698 0.87964 1.23015 0.89486 0.96447 1.06505 1.98452 1.05297 1.98622 1.96046 1.21405 0.90555 0.93282 0.95576 1.18131 0.86378 0.83612 0.78547 1.90888 1.14121 1.86555 1.49972 1.47742 1.09403 1.04656 1.69099 1.22662 0.75821 1.05078 1.03445 1.21407 0.96876 0.83950 0.96869 1.22659 0.95273 0.85250 0.94776 0.94668 1.23408 0.97357 0.97088 0.97006 1.23055 0.94060 0.98042 0.88672 1.46722 1.68106 1.05372 1.16633 1.18635 1.29198 0.95884 0.90723 0.91949 1.25750 0.98960 0.96720 1.02352 1.69874 1.48569 1.06558 1.36739 0.85791 0.77399 0.77583 0.81586 1.19437 1.23553 1.18365 1.68910 1.06185 1.30133 1.14057 0.87632 0.87926 0.87735 0.76690 0.91629 0.90330 0.86728 0.88966 0.93061 0.89546 0.87812 0.93802 0.92444 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.56 10.31 71.24 0.73 0.18 16 2 C 0.31 4.60 7.64 138.79 1.06 5.66 16 3 N -0.50 -7.69 10.31 -187.76 -1.94 -9.63 16 4 C 0.18 2.74 11.14 84.83 0.94 3.69 16 5 C -0.12 -2.60 6.40 22.79 0.15 -2.45 16 6 Cl -0.01 -0.32 26.27 -2.72 -0.07 -0.39 16 7 C 0.14 3.35 6.66 41.98 0.28 3.63 16 8 C 0.55 16.79 7.62 86.94 0.66 17.45 16 9 O -0.54 -20.29 13.84 -3.68 -0.05 -20.35 16 10 N -0.58 -16.37 2.73 -849.60 -2.32 -18.69 16 11 C 0.07 1.39 9.02 127.77 1.15 2.54 16 12 C 0.13 4.72 5.28 86.38 0.46 5.18 16 13 C 0.13 4.98 4.55 45.09 0.21 5.18 16 14 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 15 C -0.11 -3.42 7.27 31.25 0.23 -3.19 16 16 C 0.09 3.44 5.81 86.44 0.50 3.94 16 17 N -0.64 -30.88 3.29 -691.01 -2.28 -33.16 16 18 C -0.22 -12.68 10.96 84.03 0.92 -11.76 16 19 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16 20 C -0.04 -2.69 5.50 84.86 0.47 -2.23 16 21 N -0.97 -62.87 13.97 21.65 0.30 -62.57 16 22 Si 0.95 47.77 25.26 68.60 1.73 49.50 16 23 H -0.27 -12.66 7.06 99.48 0.70 -11.96 16 24 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 25 H -0.26 -12.45 5.76 99.48 0.57 -11.88 16 26 N -0.47 -8.91 6.10 -177.04 -1.08 -9.99 16 27 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.22 1.67 8.06 -2.91 -0.02 1.64 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.39 6.53 -2.38 -0.02 1.37 16 33 H 0.12 1.99 5.20 -2.65 -0.01 1.98 16 34 H 0.09 3.22 8.03 -2.39 -0.02 3.20 16 35 H 0.05 2.12 7.56 -2.39 -0.02 2.10 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.10 2.75 6.72 -2.39 -0.02 2.74 16 38 H 0.04 1.79 6.37 -2.38 -0.02 1.77 16 39 H 0.06 2.29 7.37 -2.39 -0.02 2.28 16 40 H 0.26 16.11 8.31 -92.71 -0.77 15.33 16 Total: -1.00 -76.79 340.94 2.99 -73.80 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.93 Total: 3.65 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 7.76 Total: 27.82 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -7.31 Total: -134.03 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.73 Total: 49.50 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.07 Total: -0.39 kcal Total: -76.79 2.99 -73.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085854253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.962 kcal (2) G-P(sol) polarization free energy of solvation -76.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds