Wall clock time and date at job start Tue Mar 31 2020 13:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31935 * 119.01965 * 2 1 4 4 C 1.32128 * 121.05856 * 179.97438 * 3 2 1 5 5 C 1.38999 * 119.12267 * 359.75117 * 4 3 2 6 6 Cl 1.73595 * 120.88480 * 180.25029 * 5 4 3 7 7 C 1.39632 * 118.22688 * 0.46752 * 5 4 3 8 8 C 1.48360 * 120.56214 * 179.80449 * 7 5 4 9 9 O 1.21493 * 119.99998 * 359.72078 * 8 7 5 10 10 N 1.34776 * 120.00072 * 179.72240 * 8 7 5 11 11 C 1.46504 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47047 * 179.97438 * 11 10 8 13 13 H 1.09003 * 112.91128 * 43.75036 * 12 11 10 14 14 C 1.53787 * 113.61615 * 174.99948 * 12 11 10 15 15 C 1.53781 * 87.07987 * 139.98149 * 14 12 11 16 16 H 1.09002 * 113.61228 * 89.11929 * 15 14 12 17 17 N 1.46500 * 113.61339 * 219.93875 * 15 14 12 18 18 C 1.36936 * 119.99618 * 203.47656 * 17 15 14 19 19 H 1.07990 * 120.00427 * 359.97438 * 18 17 15 20 20 C 1.38824 * 119.99622 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47624 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47095 * 120.00335 * 22 20 18 25 25 H 1.48506 * 109.47025 * 239.99804 * 22 20 18 26 26 C 1.53779 * 113.61451 * 272.49902 * 12 11 10 27 27 N 1.31520 * 119.01837 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47192 * 270.01941 * 1 2 3 29 29 H 1.09005 * 109.46779 * 30.01997 * 1 2 3 30 30 H 1.08998 * 109.47481 * 150.01885 * 1 2 3 31 31 H 1.08003 * 120.44038 * 180.02562 * 4 3 2 32 32 H 0.97002 * 119.99970 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.46915 * 60.00073 * 11 10 8 34 34 H 1.08995 * 109.47026 * 299.99881 * 11 10 8 35 35 H 1.09005 * 113.61051 * 25.43553 * 14 12 11 36 36 H 1.08996 * 113.69311 * 254.54182 * 14 12 11 37 37 H 0.96998 * 120.00149 * 23.46564 * 17 15 14 38 38 H 0.96996 * 120.00147 * 180.02562 * 21 20 18 39 39 H 1.09003 * 113.61775 * 105.47647 * 26 12 11 40 40 H 1.08996 * 113.61960 * 334.56374 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 0.0005 5 6 4.1867 0.0113 0.0063 6 17 5.9226 0.0197 0.0137 7 6 3.4757 -1.1904 0.0014 8 6 4.1911 -2.4902 0.0028 9 8 5.4058 -2.5150 0.0032 10 7 3.4935 -3.6433 0.0037 11 6 4.1999 -4.9268 0.0045 12 6 3.1820 -6.0691 0.0060 13 1 2.3579 -5.9041 -0.6881 14 6 3.8202 -7.4631 -0.1158 15 6 2.7850 -7.9407 0.9162 16 1 1.8524 -8.2873 0.4710 17 7 3.3283 -8.8791 1.9013 18 6 2.4927 -9.7435 2.5569 19 1 1.4333 -9.7332 2.3481 20 6 3.0077 -10.6331 3.4900 21 7 4.2990 -10.6460 3.7442 22 14 1.8678 -11.8117 4.3848 23 1 0.4729 -11.5986 3.9221 24 1 2.2762 -13.2101 4.0966 25 1 1.9482 -11.5640 5.8469 26 6 2.7270 -6.4869 1.4143 27 7 2.1450 -1.1501 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 3.9812 2.1508 0.0009 32 1 2.5237 -3.6235 0.0029 33 1 4.8253 -4.9967 0.8946 34 1 4.8252 -4.9980 -0.8854 35 1 4.8480 -7.5057 0.2448 36 1 3.6975 -7.9165 -1.0993 37 1 4.2799 -8.8882 2.0891 38 1 4.6589 -11.2678 4.3958 39 1 1.7208 -6.1514 1.6655 40 1 3.4558 -6.2628 2.1931 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086217547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:11 Heat of formation + Delta-G solvation = 43.804706 kcal Electronic energy + Delta-G solvation = -23859.426653 eV Core-core repulsion = 20122.548733 eV Total energy + Delta-G solvation = -3736.877920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.80808 -39.73766 -38.46857 -37.08995 -34.92844 -34.41075 -33.50200 -33.25546 -30.30872 -28.88323 -27.92331 -25.81398 -25.10139 -23.99742 -23.38872 -21.20118 -21.05349 -19.26809 -18.68199 -18.10569 -17.04991 -16.58691 -16.25702 -16.03726 -15.63318 -15.25820 -14.83444 -14.65322 -14.03320 -13.97277 -13.61196 -13.54131 -13.21187 -12.95808 -12.90678 -12.24972 -11.98145 -11.88759 -11.83952 -11.78411 -11.46742 -11.37164 -11.24361 -10.86233 -10.65916 -10.48520 -10.20196 -10.09603 -9.83506 -9.66494 -9.63918 -9.48052 -9.11343 -8.87970 -6.96981 -5.79098 -3.07876 -0.14081 0.19914 1.53148 2.39179 2.65374 3.20282 3.25515 3.39866 3.41915 3.47502 3.49870 3.93345 4.12247 4.44625 4.57598 4.81439 4.94109 4.97025 5.07314 5.17508 5.21748 5.28646 5.45520 5.48655 5.68872 5.77212 5.79566 5.90455 6.07014 6.07927 6.18436 6.28405 6.34013 6.39769 6.58833 6.81000 7.10292 7.20818 7.38642 7.69101 7.90236 8.39517 9.50654 10.08953 10.43057 11.43403 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.002290 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.112961 B =12224.107412 C =13019.143452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.319 3.681 3 N -0.493 5.493 4 C 0.168 3.832 5 C -0.111 4.111 6 Cl 0.003 6.997 7 C 0.150 3.850 8 C 0.559 3.441 9 O -0.505 6.505 10 N -0.697 5.697 11 C 0.131 3.869 12 C -0.128 4.128 13 H 0.090 0.910 14 C -0.141 4.141 15 C 0.166 3.834 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.161 4.161 27 N -0.481 5.481 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.186 0.814 32 H 0.411 0.589 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.385 0.615 38 H 0.255 0.745 39 H 0.054 0.946 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.198 25.951 -11.040 28.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.208 5.208 4 C -0.001 4.001 5 C -0.144 4.144 6 Cl 0.032 6.968 7 C 0.001 3.999 8 C 0.341 3.659 9 O -0.379 6.379 10 N -0.349 5.349 11 C 0.008 3.992 12 C -0.147 4.147 13 H 0.108 0.892 14 C -0.181 4.181 15 C 0.054 3.946 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.202 4.202 27 N -0.198 5.198 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.202 0.798 32 H 0.247 0.753 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.277 25.690 -10.949 28.251 hybrid contribution 0.380 -0.493 0.671 0.915 sum -3.896 25.196 -10.278 27.490 Atomic orbital electron populations 1.20667 0.84438 1.04846 1.04612 1.23424 0.98716 0.82729 0.89894 1.68333 1.08989 1.30327 1.13135 1.23451 0.89199 0.97471 0.89970 1.22905 0.90123 0.95966 1.05363 1.98452 1.03904 1.98601 1.95873 1.21719 0.89583 0.94360 0.94266 1.17640 0.86758 0.82765 0.78783 1.90902 1.12035 1.86452 1.48464 1.45907 1.11286 1.05263 1.72403 1.21582 0.94879 0.80189 1.02556 1.22652 0.98211 0.93719 1.00101 0.89201 1.23432 1.00590 0.93624 1.00420 1.21516 0.95273 0.88193 0.89650 0.90708 1.42419 1.07848 1.40140 1.44703 1.19343 0.90899 1.11194 1.15966 0.91042 1.24776 0.95931 1.00093 1.00194 1.69668 1.10767 1.40107 1.37473 0.86121 0.79752 0.80876 0.79462 1.20529 1.21852 1.21860 1.23959 1.00578 1.01182 0.94524 1.68338 1.07421 1.31041 1.13040 0.88902 0.89091 0.88931 0.79751 0.75320 0.90692 0.91227 0.90044 0.91909 0.78066 0.93494 0.92683 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.47 10.31 36.01 0.37 -0.09 16 2 C 0.32 2.81 7.64 -157.31 -1.20 1.61 16 3 N -0.49 -4.35 10.31 -10.70 -0.11 -4.46 16 4 C 0.17 1.34 11.14 -17.14 -0.19 1.15 16 5 C -0.11 -1.12 6.40 -38.78 -0.25 -1.37 16 6 Cl 0.00 0.03 26.25 -51.86 -1.36 -1.33 16 7 C 0.15 1.71 6.79 -82.62 -0.56 1.15 16 8 C 0.56 7.29 7.82 -12.09 -0.09 7.20 16 9 O -0.50 -7.76 14.14 5.37 0.08 -7.69 16 10 N -0.70 -8.25 5.55 -61.08 -0.34 -8.59 16 11 C 0.13 1.66 5.51 -4.04 -0.02 1.64 16 12 C -0.13 -1.66 3.75 -89.81 -0.34 -2.00 16 13 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 14 C -0.14 -2.18 7.39 -25.92 -0.19 -2.37 16 15 C 0.17 3.15 4.47 -67.12 -0.30 2.85 16 16 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 17 N -0.71 -17.66 5.41 -52.63 -0.28 -17.94 16 18 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C -0.16 -2.63 7.43 -25.92 -0.19 -2.83 16 27 N -0.48 -4.93 9.59 -7.31 -0.07 -5.00 16 28 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.19 0.84 8.06 -52.48 -0.42 0.41 16 32 H 0.41 4.28 7.86 -40.82 -0.32 3.96 16 33 H 0.07 1.07 7.84 -51.93 -0.41 0.67 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.39 10.17 7.91 -40.82 -0.32 9.85 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.42 7.89 -51.93 -0.41 1.01 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -32.27 358.20 -9.43 -41.70 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.23 Total: 8.47 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -3.21 Total: -0.39 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.08 Total: -63.41 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.08 Total: -7.69 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.36 Total: -1.33 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.27 -9.43 -41.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086217547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.508 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds