Wall clock time and date at job start Tue Mar 31 2020 13:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31935 * 119.01965 * 2 1 4 4 C 1.32128 * 121.05856 * 179.97438 * 3 2 1 5 5 C 1.38999 * 119.12267 * 359.75117 * 4 3 2 6 6 Cl 1.73595 * 120.88480 * 180.25029 * 5 4 3 7 7 C 1.39632 * 118.22688 * 0.46752 * 5 4 3 8 8 C 1.48360 * 120.56214 * 179.80449 * 7 5 4 9 9 O 1.21493 * 119.99998 * 359.72078 * 8 7 5 10 10 N 1.34776 * 120.00072 * 179.72240 * 8 7 5 11 11 C 1.46504 * 120.00093 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47047 * 179.97438 * 11 10 8 13 13 H 1.09003 * 112.91128 * 43.75036 * 12 11 10 14 14 C 1.53787 * 113.61615 * 174.99948 * 12 11 10 15 15 C 1.53781 * 87.07987 * 139.98149 * 14 12 11 16 16 H 1.09002 * 113.61228 * 89.11929 * 15 14 12 17 17 N 1.46500 * 113.61339 * 219.93875 * 15 14 12 18 18 C 1.36936 * 119.99618 * 203.47656 * 17 15 14 19 19 H 1.07990 * 120.00427 * 359.97438 * 18 17 15 20 20 C 1.38824 * 119.99622 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47624 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47095 * 120.00335 * 22 20 18 25 25 H 1.48506 * 109.47025 * 239.99804 * 22 20 18 26 26 C 1.53779 * 113.61451 * 272.49902 * 12 11 10 27 27 N 1.31520 * 119.01837 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47192 * 270.01941 * 1 2 3 29 29 H 1.09005 * 109.46779 * 30.01997 * 1 2 3 30 30 H 1.08998 * 109.47481 * 150.01885 * 1 2 3 31 31 H 1.08003 * 120.44038 * 180.02562 * 4 3 2 32 32 H 0.97002 * 119.99970 * 0.02562 * 10 8 7 33 33 H 1.09003 * 109.46915 * 60.00073 * 11 10 8 34 34 H 1.08995 * 109.47026 * 299.99881 * 11 10 8 35 35 H 1.09005 * 113.61051 * 25.43553 * 14 12 11 36 36 H 1.08996 * 113.69311 * 254.54182 * 14 12 11 37 37 H 0.96998 * 120.00149 * 23.46564 * 17 15 14 38 38 H 0.96996 * 120.00147 * 180.02562 * 21 20 18 39 39 H 1.09003 * 113.61775 * 105.47647 * 26 12 11 40 40 H 1.08996 * 113.61960 * 334.56374 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1537 0.0000 4 6 3.4675 1.2007 0.0005 5 6 4.1867 0.0113 0.0063 6 17 5.9226 0.0197 0.0137 7 6 3.4757 -1.1904 0.0014 8 6 4.1911 -2.4902 0.0028 9 8 5.4058 -2.5150 0.0032 10 7 3.4935 -3.6433 0.0037 11 6 4.1999 -4.9268 0.0045 12 6 3.1820 -6.0691 0.0060 13 1 2.3579 -5.9041 -0.6881 14 6 3.8202 -7.4631 -0.1158 15 6 2.7850 -7.9407 0.9162 16 1 1.8524 -8.2873 0.4710 17 7 3.3283 -8.8791 1.9013 18 6 2.4927 -9.7435 2.5569 19 1 1.4333 -9.7332 2.3481 20 6 3.0077 -10.6331 3.4900 21 7 4.2990 -10.6460 3.7442 22 14 1.8678 -11.8117 4.3848 23 1 0.4729 -11.5986 3.9221 24 1 2.2762 -13.2101 4.0966 25 1 1.9482 -11.5640 5.8469 26 6 2.7270 -6.4869 1.4143 27 7 2.1450 -1.1501 0.0005 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8899 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 3.9812 2.1508 0.0009 32 1 2.5237 -3.6235 0.0029 33 1 4.8253 -4.9967 0.8946 34 1 4.8252 -4.9980 -0.8854 35 1 4.8480 -7.5057 0.2448 36 1 3.6975 -7.9165 -1.0993 37 1 4.2799 -8.8882 2.0891 38 1 4.6589 -11.2678 4.3958 39 1 1.7208 -6.1514 1.6655 40 1 3.4558 -6.2628 2.1931 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086217547.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:10 Heat of formation + Delta-G solvation = 21.829508 kcal Electronic energy + Delta-G solvation = -23860.379569 eV Core-core repulsion = 20122.548733 eV Total energy + Delta-G solvation = -3737.830836 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.53378 -40.78175 -39.75937 -37.86053 -36.15052 -35.38628 -34.85069 -34.13687 -32.18238 -29.43998 -29.13965 -26.79061 -26.45405 -25.69491 -24.21997 -22.49337 -22.06017 -20.59653 -19.60637 -19.06559 -18.84469 -17.37809 -17.13849 -17.04280 -16.72624 -16.31811 -16.19917 -15.88066 -15.46014 -15.08930 -14.73135 -14.59541 -14.47125 -13.94334 -13.43404 -13.28313 -13.22504 -13.04556 -12.93218 -12.89013 -12.68584 -12.63606 -12.56507 -12.17658 -12.14707 -12.05432 -11.63370 -11.56309 -11.39642 -11.06973 -10.82193 -10.41727 -10.40344 -10.12405 -8.96915 -7.94191 -5.22250 -0.92640 -0.46447 0.78160 1.47722 1.48238 1.50398 1.58345 1.73948 2.43284 2.55238 2.57327 2.79043 3.17258 3.36584 3.38537 3.70370 3.73602 3.80819 3.92689 4.24435 4.26202 4.35337 4.42134 4.55574 4.71483 4.72150 4.75544 4.78921 4.97220 4.99568 5.04681 5.19263 5.23762 5.28036 5.39339 5.41911 5.53283 5.73237 6.28473 6.30276 6.65296 6.94621 7.33964 8.12585 8.34044 9.29633 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.002290 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.112961 B =12224.107412 C =13019.143452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.313 3.687 3 N -0.497 5.497 4 C 0.180 3.820 5 C -0.120 4.120 6 Cl -0.007 7.007 7 C 0.133 3.867 8 C 0.556 3.444 9 O -0.534 6.534 10 N -0.689 5.689 11 C 0.137 3.863 12 C -0.096 4.096 13 H 0.121 0.879 14 C -0.134 4.134 15 C 0.143 3.857 16 H 0.080 0.920 17 N -0.730 5.730 18 C -0.239 4.239 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.972 3.028 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.296 1.296 26 C -0.155 4.155 27 N -0.489 5.489 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.219 0.781 32 H 0.419 0.581 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.372 0.628 38 H 0.250 0.750 39 H 0.066 0.934 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.356 27.607 -12.182 30.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 N -0.212 5.212 4 C 0.011 3.989 5 C -0.153 4.153 6 Cl 0.022 6.978 7 C -0.015 4.015 8 C 0.339 3.661 9 O -0.410 6.410 10 N -0.341 5.341 11 C 0.014 3.986 12 C -0.115 4.115 13 H 0.139 0.861 14 C -0.173 4.173 15 C 0.034 3.966 16 H 0.098 0.902 17 N -0.368 5.368 18 C -0.371 4.371 19 H 0.097 0.903 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.801 3.199 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.223 1.223 26 C -0.196 4.196 27 N -0.207 5.207 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.235 0.765 32 H 0.257 0.743 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.204 0.796 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.505 27.381 -12.134 30.648 hybrid contribution 0.992 -0.898 0.969 1.652 sum -5.513 26.484 -11.166 29.265 Atomic orbital electron populations 1.20824 0.82065 1.05951 1.05571 1.24122 1.00127 0.82331 0.88682 1.68464 1.09211 1.30253 1.13292 1.23991 0.88968 0.97981 0.87955 1.23032 0.89737 0.96383 1.06164 1.98447 1.04738 1.98619 1.95986 1.21531 0.90329 0.93857 0.95783 1.17921 0.86563 0.83546 0.78097 1.90882 1.13298 1.87002 1.49832 1.45795 1.11634 1.04699 1.71959 1.21399 0.94652 0.80570 1.01983 1.22475 0.98469 0.92423 0.98160 0.86119 1.23304 0.99050 0.94957 0.99981 1.21954 0.96525 0.88252 0.89905 0.90167 1.42643 1.07058 1.41106 1.45964 1.19762 0.91540 1.10673 1.15127 0.90290 1.25595 0.97343 1.02466 1.01865 1.69827 1.12599 1.41321 1.38617 0.85084 0.78684 0.78346 0.77741 1.18738 1.22190 1.22339 1.23743 1.00755 0.99133 0.95926 1.68356 1.06752 1.31838 1.13718 0.87821 0.87703 0.88103 0.76486 0.74310 0.92645 0.90597 0.91235 0.90093 0.79628 0.94135 0.91572 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.31 71.24 0.73 0.04 16 2 C 0.31 4.86 7.64 138.79 1.06 5.92 16 3 N -0.50 -7.63 10.31 -187.76 -1.94 -9.57 16 4 C 0.18 2.50 11.14 84.83 0.95 3.44 16 5 C -0.12 -2.30 6.40 22.79 0.15 -2.15 16 6 Cl -0.01 -0.14 26.25 -2.72 -0.07 -0.21 16 7 C 0.13 2.91 6.79 41.98 0.29 3.19 16 8 C 0.56 14.19 7.82 86.94 0.68 14.87 16 9 O -0.53 -16.47 14.14 -3.69 -0.05 -16.52 16 10 N -0.69 -15.42 5.55 -465.47 -2.58 -18.00 16 11 C 0.14 3.33 5.51 86.38 0.48 3.81 16 12 C -0.10 -2.30 3.75 -10.27 -0.04 -2.34 16 13 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 14 C -0.13 -3.96 7.39 31.12 0.23 -3.73 16 15 C 0.14 5.32 4.47 45.52 0.20 5.53 16 16 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 17 N -0.73 -36.57 5.41 -320.44 -1.73 -38.31 16 18 C -0.24 -13.18 9.97 84.04 0.84 -12.35 16 19 H 0.08 4.14 7.83 -2.92 -0.02 4.12 16 20 C -0.08 -4.66 5.50 84.87 0.47 -4.20 16 21 N -0.97 -60.21 13.06 21.66 0.28 -59.93 16 22 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 26 C -0.15 -4.89 7.43 31.12 0.23 -4.66 16 27 N -0.49 -9.23 9.59 -177.05 -1.70 -10.92 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.22 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.42 7.89 7.86 -92.71 -0.73 7.17 16 33 H 0.06 1.59 7.84 -2.39 -0.02 1.58 16 34 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.25 8.07 -2.38 -0.02 2.23 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.37 20.26 7.91 -92.71 -0.73 19.52 16 38 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 2.05 7.89 -2.39 -0.02 2.03 16 Total: -1.00 -70.71 358.20 0.12 -70.58 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -0.37 Total: 27.30 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 6.26 Total: 7.39 kcal Atomic # 7 Polarization: -129.07 SS G_CDS: -7.67 Total: -136.74 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.05 Total: -16.52 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.07 Total: -0.21 kcal Total: -70.71 0.12 -70.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086217547.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.414 kcal (2) G-P(sol) polarization free energy of solvation -70.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds