Wall clock time and date at job start Tue Mar 31 2020 13:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00249 * 2 1 4 4 H 1.48506 * 109.47131 * 239.99957 * 3 2 1 5 5 H 1.48497 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47617 * 119.99939 * 3 2 1 7 7 C 1.38813 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00338 * 189.97788 * 7 2 1 9 9 N 1.36934 * 120.00117 * 9.97843 * 7 2 1 10 10 C 1.47235 * 121.39153 * 210.85397 * 9 7 2 11 11 C 1.51496 * 107.91664 * 237.94706 * 10 9 7 12 12 C 1.53083 * 111.62165 * 302.68851 * 11 10 9 13 13 H 1.09006 * 112.14619 * 287.53059 * 12 11 10 14 14 C 1.55407 * 106.81653 * 163.90591 * 12 11 10 15 15 N 1.47182 * 106.93493 * 268.55278 * 14 12 11 16 16 C 1.34772 * 125.64989 * 178.80535 * 15 14 12 17 17 O 1.21741 * 120.00180 * 185.01931 * 16 15 14 18 18 C 1.46295 * 120.00314 * 5.01615 * 16 15 14 19 19 S 1.75825 * 125.46235 * 354.13448 * 18 16 15 20 20 C 1.70593 * 91.60622 * 179.97438 * 19 18 16 21 21 C 1.33733 * 111.04214 * 0.32561 * 20 19 18 22 22 C 1.36923 * 125.46225 * 174.43732 * 18 16 15 23 23 F 1.35091 * 123.41117 * 359.95735 * 22 18 16 24 24 C 1.47854 * 108.69898 * 358.83527 * 15 14 12 25 25 C 1.53851 * 103.98977 * 336.64897 * 24 15 14 26 26 H 1.08996 * 108.55773 * 283.25539 * 25 24 15 27 27 C 1.46708 * 121.39237 * 30.83668 * 9 7 2 28 28 H 0.96998 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.81573 * 357.87393 * 10 9 7 30 30 H 1.09004 * 109.80631 * 118.70568 * 10 9 7 31 31 H 1.09000 * 108.89576 * 182.06594 * 11 10 9 32 32 H 1.09006 * 108.78024 * 63.22535 * 11 10 9 33 33 H 1.09005 * 109.96563 * 27.91833 * 14 12 11 34 34 H 1.09003 * 109.97036 * 149.17494 * 14 12 11 35 35 H 1.08005 * 124.48316 * 180.02562 * 20 19 18 36 36 H 1.08002 * 122.45932 * 179.72403 * 21 20 19 37 37 H 1.08999 * 110.52083 * 218.02488 * 24 15 14 38 38 H 1.08997 * 110.52390 * 95.27341 * 24 15 14 39 39 H 1.08995 * 109.12243 * 7.41741 * 27 9 7 40 40 H 1.08994 * 109.12255 * 248.32359 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0780 -1.2093 0.1626 9 7 1.3411 -2.3792 -0.2044 10 6 1.7969 -3.6375 0.4094 11 6 2.0546 -4.6324 -0.7037 12 6 0.8078 -4.8513 -1.5645 13 1 0.0457 -5.4312 -1.0439 14 6 1.2819 -5.5363 -2.8764 15 7 1.5661 -4.4627 -3.8422 16 6 2.0241 -4.6366 -5.0977 17 8 2.3114 -3.6703 -5.7802 18 6 2.1762 -5.9866 -5.6405 19 16 1.9460 -7.4797 -4.7410 20 6 2.3158 -8.4208 -6.1150 21 6 2.5978 -7.6446 -7.1669 22 6 2.5265 -6.2899 -6.9290 23 9 2.7774 -5.3550 -7.8714 24 6 1.2666 -3.1618 -3.2066 25 6 0.2613 -3.5131 -2.0962 26 1 -0.7144 -3.6810 -2.5521 27 6 0.1398 -2.4390 -1.0445 28 1 -0.4850 0.8400 0.0004 29 1 2.7131 -3.4628 0.9732 30 1 1.0238 -4.0264 1.0722 31 1 2.3581 -5.5827 -0.2644 32 1 2.8618 -4.2550 -1.3317 33 1 2.1854 -6.1163 -2.6880 34 1 0.4960 -6.1858 -3.2622 35 1 2.3259 -9.5006 -6.1318 36 1 2.8620 -8.0503 -8.1323 37 1 0.8168 -2.4790 -3.9273 38 1 2.1708 -2.7277 -2.7800 39 1 -0.0025 -1.4752 -1.5332 40 1 -0.7252 -2.6508 -0.4160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087954778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:05 Heat of formation + Delta-G solvation = -13.754823 kcal Electronic energy + Delta-G solvation = -25695.114988 eV Core-core repulsion = 21937.864844 eV Total energy + Delta-G solvation = -3757.250144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.94013 -40.22542 -38.45029 -37.29286 -35.34224 -32.70809 -31.36215 -30.49578 -29.77100 -27.51914 -26.08523 -24.82790 -23.60579 -21.90444 -21.49536 -20.86871 -19.60865 -18.53954 -18.13271 -17.05357 -16.46760 -16.20433 -16.11055 -15.56930 -15.05130 -14.72990 -14.58918 -14.19833 -14.03171 -13.74975 -13.62274 -13.45420 -12.94097 -12.73023 -12.54231 -12.31923 -12.16460 -12.02055 -11.87260 -11.38220 -11.04697 -10.95890 -10.72097 -10.64993 -10.48270 -10.24937 -9.96444 -9.88554 -9.55012 -9.45552 -9.22064 -8.81275 -8.53702 -8.33787 -6.65456 -5.81020 -3.28679 0.15229 1.08281 1.52314 1.93795 3.01783 3.14594 3.39148 3.44658 3.46410 4.04913 4.44192 4.47732 4.65770 4.70561 4.97925 5.03193 5.08955 5.31902 5.35748 5.40450 5.48295 5.57257 5.59801 5.74456 5.83185 6.03932 6.04900 6.18074 6.26505 6.33971 6.41207 6.49998 6.66048 6.74000 6.78086 6.94366 7.24032 7.59578 7.63355 7.76916 8.19921 8.43838 9.19442 9.80148 10.40481 11.27448 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021070 B = 0.003603 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.587322 B = 7769.680379 C = 8613.746405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.129 4.129 12 C -0.077 4.077 13 H 0.092 0.908 14 C 0.087 3.913 15 N -0.610 5.610 16 C 0.598 3.402 17 O -0.525 6.525 18 C -0.306 4.306 19 S 0.272 5.728 20 C -0.233 4.233 21 C -0.178 4.178 22 C 0.155 3.845 23 F -0.105 7.105 24 C 0.123 3.877 25 C -0.114 4.114 26 H 0.065 0.935 27 C 0.179 3.821 28 H 0.255 0.745 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.176 0.824 36 H 0.154 0.846 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -19.874 -8.279 21.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.169 4.169 12 C -0.096 4.096 13 H 0.111 0.889 14 C -0.038 4.038 15 N -0.343 5.343 16 C 0.386 3.614 17 O -0.403 6.403 18 C -0.428 4.428 19 S 0.539 5.461 20 C -0.371 4.371 21 C -0.210 4.210 22 C 0.121 3.879 23 F -0.083 7.083 24 C 0.002 3.998 25 C -0.135 4.135 26 H 0.083 0.917 27 C 0.052 3.948 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.194 0.806 36 H 0.172 0.828 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.108 -19.510 -7.265 20.848 hybrid contribution 0.871 1.047 -1.864 2.308 sum 1.979 -18.463 -9.129 20.692 Atomic orbital electron populations 1.69933 1.05231 1.25686 1.54057 1.25141 0.95410 0.98345 1.00266 0.86360 0.78903 0.83256 0.78188 1.20872 1.21576 1.20870 1.19071 0.90654 0.83604 1.44774 0.91825 1.43948 1.30743 1.03570 1.52858 1.20660 0.97832 0.87331 0.92594 1.21831 0.96551 0.99404 0.99083 1.22092 0.98227 0.96338 0.92944 0.88947 1.22602 1.00155 0.90150 0.90860 1.48534 1.64366 1.09949 1.11465 1.16263 0.78133 0.86348 0.80687 1.90893 1.50424 1.40434 1.58561 1.24721 1.20000 0.99363 0.98678 1.83540 1.62224 0.91458 1.08862 1.25441 1.06246 1.05878 0.99496 1.19808 1.08090 0.90842 1.02222 1.16880 0.99443 0.86428 0.85174 1.91572 1.90810 1.63823 1.62135 1.22275 1.00133 0.83433 0.93911 1.22262 0.97131 0.96854 0.97210 0.91692 1.20076 0.88697 0.96380 0.89632 0.93484 0.92525 0.96151 0.93019 0.92131 0.91081 0.91448 0.80635 0.82825 0.90841 0.89664 0.88891 0.95688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 11.04 55.49 0.61 -24.79 16 2 C 0.01 0.19 5.09 -17.43 -0.09 0.11 16 3 Si 0.90 21.54 29.57 -169.99 -5.03 16.51 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.64 9.67 -15.06 -0.15 -6.78 16 8 H 0.06 1.67 7.85 -52.48 -0.41 1.26 16 9 N -0.59 -13.79 2.90 -174.68 -0.51 -14.30 16 10 C 0.14 2.73 6.48 -4.40 -0.03 2.70 16 11 C -0.13 -2.01 4.74 -27.45 -0.13 -2.14 16 12 C -0.08 -1.10 3.59 -88.77 -0.32 -1.42 16 13 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.09 1.11 4.50 -2.39 -0.01 1.10 16 15 N -0.61 -9.98 3.34 -171.69 -0.57 -10.55 16 16 C 0.60 10.57 7.80 -13.02 -0.10 10.47 16 17 O -0.52 -11.37 16.47 5.15 0.08 -11.28 16 18 C -0.31 -4.28 6.38 -36.82 -0.23 -4.51 16 19 S 0.27 2.45 18.46 -107.50 -1.98 0.47 16 20 C -0.23 -1.76 10.91 29.15 0.32 -1.44 16 21 C -0.18 -1.68 10.15 -41.35 -0.42 -2.10 16 22 C 0.16 2.09 7.47 -40.24 -0.30 1.79 16 23 F -0.11 -1.66 16.44 2.25 0.04 -1.63 16 24 C 0.12 2.29 5.89 -2.86 -0.02 2.28 16 25 C -0.11 -1.99 2.81 -90.74 -0.26 -2.24 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 C 0.18 3.95 4.67 -5.02 -0.02 3.93 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.06 1.09 7.96 -51.93 -0.41 0.67 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.04 7.15 -51.93 -0.37 0.67 16 33 H 0.07 0.81 6.61 -51.93 -0.34 0.47 16 34 H 0.07 0.72 6.85 -51.93 -0.36 0.37 16 35 H 0.18 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 38 H 0.09 1.80 7.55 -51.93 -0.39 1.41 16 39 H 0.09 2.36 6.11 -51.93 -0.32 2.04 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -31.52 333.01 -9.21 -40.73 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -5.12 Total: -1.89 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.76 Total: 1.72 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -0.47 Total: -49.65 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.98 Total: 0.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.52 -9.21 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087954778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.975 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds