Wall clock time and date at job start Tue Mar 31 2020 13:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00249 * 2 1 4 4 H 1.48506 * 109.47131 * 239.99957 * 3 2 1 5 5 H 1.48497 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47617 * 119.99939 * 3 2 1 7 7 C 1.38813 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00338 * 189.97788 * 7 2 1 9 9 N 1.36934 * 120.00117 * 9.97843 * 7 2 1 10 10 C 1.47235 * 121.39153 * 210.85397 * 9 7 2 11 11 C 1.51496 * 107.91664 * 237.94706 * 10 9 7 12 12 C 1.53083 * 111.62165 * 302.68851 * 11 10 9 13 13 H 1.09006 * 112.14619 * 287.53059 * 12 11 10 14 14 C 1.55407 * 106.81653 * 163.90591 * 12 11 10 15 15 N 1.47182 * 106.93493 * 268.55278 * 14 12 11 16 16 C 1.34772 * 125.64989 * 178.80535 * 15 14 12 17 17 O 1.21741 * 120.00180 * 185.01931 * 16 15 14 18 18 C 1.46295 * 120.00314 * 5.01615 * 16 15 14 19 19 S 1.75825 * 125.46235 * 354.13448 * 18 16 15 20 20 C 1.70593 * 91.60622 * 179.97438 * 19 18 16 21 21 C 1.33733 * 111.04214 * 0.32561 * 20 19 18 22 22 C 1.36923 * 125.46225 * 174.43732 * 18 16 15 23 23 F 1.35091 * 123.41117 * 359.95735 * 22 18 16 24 24 C 1.47854 * 108.69898 * 358.83527 * 15 14 12 25 25 C 1.53851 * 103.98977 * 336.64897 * 24 15 14 26 26 H 1.08996 * 108.55773 * 283.25539 * 25 24 15 27 27 C 1.46708 * 121.39237 * 30.83668 * 9 7 2 28 28 H 0.96998 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.81573 * 357.87393 * 10 9 7 30 30 H 1.09004 * 109.80631 * 118.70568 * 10 9 7 31 31 H 1.09000 * 108.89576 * 182.06594 * 11 10 9 32 32 H 1.09006 * 108.78024 * 63.22535 * 11 10 9 33 33 H 1.09005 * 109.96563 * 27.91833 * 14 12 11 34 34 H 1.09003 * 109.97036 * 149.17494 * 14 12 11 35 35 H 1.08005 * 124.48316 * 180.02562 * 20 19 18 36 36 H 1.08002 * 122.45932 * 179.72403 * 21 20 19 37 37 H 1.08999 * 110.52083 * 218.02488 * 24 15 14 38 38 H 1.08997 * 110.52390 * 95.27341 * 24 15 14 39 39 H 1.08995 * 109.12243 * 7.41741 * 27 9 7 40 40 H 1.08994 * 109.12255 * 248.32359 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0780 -1.2093 0.1626 9 7 1.3411 -2.3792 -0.2044 10 6 1.7969 -3.6375 0.4094 11 6 2.0546 -4.6324 -0.7037 12 6 0.8078 -4.8513 -1.5645 13 1 0.0457 -5.4312 -1.0439 14 6 1.2819 -5.5363 -2.8764 15 7 1.5661 -4.4627 -3.8422 16 6 2.0241 -4.6366 -5.0977 17 8 2.3114 -3.6703 -5.7802 18 6 2.1762 -5.9866 -5.6405 19 16 1.9460 -7.4797 -4.7410 20 6 2.3158 -8.4208 -6.1150 21 6 2.5978 -7.6446 -7.1669 22 6 2.5265 -6.2899 -6.9290 23 9 2.7774 -5.3550 -7.8714 24 6 1.2666 -3.1618 -3.2066 25 6 0.2613 -3.5131 -2.0962 26 1 -0.7144 -3.6810 -2.5521 27 6 0.1398 -2.4390 -1.0445 28 1 -0.4850 0.8400 0.0004 29 1 2.7131 -3.4628 0.9732 30 1 1.0238 -4.0264 1.0722 31 1 2.3581 -5.5827 -0.2644 32 1 2.8618 -4.2550 -1.3317 33 1 2.1854 -6.1163 -2.6880 34 1 0.4960 -6.1858 -3.2622 35 1 2.3259 -9.5006 -6.1318 36 1 2.8620 -8.0503 -8.1323 37 1 0.8168 -2.4790 -3.9273 38 1 2.1708 -2.7277 -2.7800 39 1 -0.0025 -1.4752 -1.5332 40 1 -0.7252 -2.6508 -0.4160 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087954778.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:04 Heat of formation + Delta-G solvation = -33.587196 kcal Electronic energy + Delta-G solvation = -25695.974984 eV Core-core repulsion = 21937.864844 eV Total energy + Delta-G solvation = -3758.110140 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.00983 -41.56834 -39.76227 -38.22826 -36.96697 -34.41897 -32.77645 -32.18730 -30.80970 -28.96804 -27.59085 -26.07281 -24.96348 -23.31910 -23.03362 -21.97783 -20.55486 -20.01958 -19.39299 -18.50765 -17.67207 -17.50604 -17.36244 -16.92304 -16.48171 -16.10703 -15.77638 -15.44933 -15.23138 -15.16403 -14.93057 -14.79619 -14.41816 -14.08080 -13.87523 -13.63437 -13.50975 -13.25806 -12.96786 -12.79985 -12.78492 -12.51974 -12.47837 -12.17138 -12.04943 -11.89837 -11.54943 -11.26995 -11.02667 -11.01996 -10.54840 -10.14656 -9.81010 -9.38996 -8.58169 -7.86134 -5.34565 -0.72252 0.27433 0.79967 1.12568 1.44201 1.47450 1.52344 1.76479 1.91370 2.50005 3.24949 3.28918 3.32750 3.51614 3.71040 3.76007 3.89369 3.95484 4.21215 4.32948 4.38617 4.44033 4.52765 4.65591 4.68267 4.73149 4.83271 4.86093 4.98222 5.04876 5.10935 5.18788 5.20047 5.21894 5.33618 5.37017 5.60666 5.66884 5.78537 6.34007 6.42906 6.89221 7.18432 7.88896 8.42355 9.19215 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021070 B = 0.003603 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.587322 B = 7769.680379 C = 8613.746405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.958 3.042 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.273 1.273 7 C -0.256 4.256 8 H 0.060 0.940 9 N -0.608 5.608 10 C 0.137 3.863 11 C -0.120 4.120 12 C -0.069 4.069 13 H 0.129 0.871 14 C 0.088 3.912 15 N -0.609 5.609 16 C 0.591 3.409 17 O -0.586 6.586 18 C -0.358 4.358 19 S 0.341 5.659 20 C -0.199 4.199 21 C -0.191 4.191 22 C 0.138 3.862 23 F -0.131 7.131 24 C 0.131 3.869 25 C -0.107 4.107 26 H 0.081 0.919 27 C 0.190 3.810 28 H 0.249 0.751 29 H 0.051 0.949 30 H 0.030 0.970 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.223 0.777 36 H 0.177 0.823 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -24.914 -7.911 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.786 3.214 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.386 4.386 8 H 0.078 0.922 9 N -0.331 5.331 10 C 0.012 3.988 11 C -0.159 4.159 12 C -0.088 4.088 13 H 0.146 0.854 14 C -0.035 4.035 15 N -0.341 5.341 16 C 0.381 3.619 17 O -0.469 6.469 18 C -0.479 4.479 19 S 0.609 5.391 20 C -0.337 4.337 21 C -0.221 4.221 22 C 0.102 3.898 23 F -0.110 7.110 24 C 0.008 3.992 25 C -0.128 4.128 26 H 0.099 0.901 27 C 0.064 3.936 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.240 0.760 36 H 0.195 0.805 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 1.295 -24.612 -6.858 25.582 hybrid contribution 0.847 2.490 -1.952 3.275 sum 2.142 -22.122 -8.810 23.908 Atomic orbital electron populations 1.70079 1.06281 1.25664 1.55728 1.25759 0.96114 1.00987 1.01091 0.85495 0.77720 0.80069 0.78086 1.21314 1.21894 1.19872 1.19332 0.90820 0.85136 1.43358 0.92212 1.44184 1.30796 1.04309 1.53857 1.20850 0.97631 0.86276 0.94019 1.21724 0.96495 1.00099 0.97591 1.22163 0.98365 0.94463 0.93799 0.85354 1.22828 1.02348 0.89333 0.88985 1.48537 1.63939 1.09792 1.11826 1.16871 0.77009 0.87581 0.80420 1.90839 1.53091 1.42928 1.60072 1.24562 1.23456 0.99729 1.00105 1.83081 1.60382 0.87701 1.07956 1.26012 1.02157 1.07794 0.97751 1.19958 1.09149 0.88829 1.04187 1.17574 0.99714 0.87742 0.84789 1.91497 1.91124 1.65227 1.63125 1.21902 0.98758 0.84673 0.93820 1.22012 0.97789 0.97474 0.95502 0.90067 1.19775 0.87888 0.95948 0.89997 0.94173 0.93043 0.95215 0.88485 0.94318 0.88675 0.88141 0.76019 0.80546 0.93345 0.93057 0.93197 0.97196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 11.04 21.65 0.24 -54.40 16 2 C -0.04 -2.45 5.09 84.86 0.43 -2.02 16 3 Si 0.96 45.91 29.57 68.60 2.03 47.93 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.26 -13.98 9.67 84.03 0.81 -13.17 16 8 H 0.06 3.23 7.85 -2.91 -0.02 3.21 16 9 N -0.61 -29.15 2.90 -706.58 -2.05 -31.20 16 10 C 0.14 5.11 6.48 85.75 0.56 5.67 16 11 C -0.12 -3.38 4.74 30.13 0.14 -3.24 16 12 C -0.07 -1.75 3.59 -9.59 -0.03 -1.79 16 13 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 14 C 0.09 1.91 4.50 87.08 0.39 2.30 16 15 N -0.61 -19.77 3.34 -815.31 -2.72 -22.49 16 16 C 0.59 21.37 7.80 86.34 0.67 22.05 16 17 O -0.59 -27.28 16.47 -4.48 -0.07 -27.35 16 18 C -0.36 -9.53 6.38 24.06 0.15 -9.38 16 19 S 0.34 4.44 18.46 -56.49 -1.04 3.40 16 20 C -0.20 -1.84 10.91 66.80 0.73 -1.11 16 21 C -0.19 -2.95 10.15 21.13 0.21 -2.73 16 22 C 0.14 3.60 7.47 21.84 0.16 3.76 16 23 F -0.13 -4.33 16.44 44.97 0.74 -3.59 16 24 C 0.13 5.12 5.89 86.41 0.51 5.63 16 25 C -0.11 -3.73 2.81 -10.87 -0.03 -3.76 16 26 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 27 C 0.19 8.71 4.67 85.63 0.40 9.11 16 28 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.05 1.93 7.96 -2.39 -0.02 1.91 16 30 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.27 7.15 -2.38 -0.02 1.25 16 33 H 0.10 1.68 6.61 -2.38 -0.02 1.66 16 34 H 0.10 1.60 6.85 -2.39 -0.02 1.59 16 35 H 0.22 0.07 8.06 -2.91 -0.02 0.04 16 36 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.05 2.08 8.11 -2.39 -0.02 2.06 16 38 H 0.05 2.33 7.55 -2.39 -0.02 2.32 16 39 H 0.05 2.70 6.11 -2.39 -0.01 2.69 16 40 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -77.44 333.01 3.30 -74.14 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: 1.06 Total: 2.26 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 5.11 Total: 11.31 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -4.53 Total: -108.09 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.07 Total: -27.35 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.74 Total: -3.59 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.04 Total: 3.40 kcal Total: -77.44 3.30 -74.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087954778.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.553 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds