Wall clock time and date at job start Tue Mar 31 2020 13:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.54060 * 112.57991 * 2 1 4 4 N 1.48339 * 104.51606 * 97.43668 * 3 2 1 5 5 C 1.36928 * 128.19710 * 221.79592 * 4 3 2 6 6 H 1.08001 * 120.00171 * 8.64575 * 5 4 3 7 7 C 1.38813 * 120.00153 * 188.64669 * 5 4 3 8 8 N 1.31620 * 119.99720 * 19.56798 * 7 5 4 9 9 Si 1.86798 * 120.00276 * 199.57095 * 7 5 4 10 10 H 1.48508 * 109.46792 * 265.00195 * 9 7 5 11 11 H 1.48506 * 109.47102 * 145.00704 * 9 7 5 12 12 H 1.48494 * 109.47315 * 25.00004 * 9 7 5 13 13 C 1.48331 * 103.60216 * 41.53343 * 4 3 2 14 14 C 1.54453 * 104.32512 * 318.43352 * 13 4 3 15 15 H 1.08995 * 112.29934 * 263.01057 * 14 13 4 16 16 C 1.53744 * 109.01167 * 137.92130 * 14 13 4 17 17 N 1.47196 * 106.43185 * 229.45623 * 16 14 13 18 18 C 1.34776 * 126.70067 * 211.40971 * 17 16 14 19 19 O 1.21742 * 119.99350 * 173.97932 * 18 17 16 20 20 C 1.46338 * 120.00462 * 353.97393 * 18 17 16 21 21 C 1.36733 * 125.43977 * 174.07097 * 20 18 17 22 22 C 1.37340 * 113.33491 * 179.97438 * 21 20 18 23 23 C 1.34206 * 115.04632 * 359.97438 * 22 21 20 24 24 F 1.35094 * 124.54316 * 179.97438 * 23 22 21 25 25 S 1.70625 * 110.91498 * 359.72694 * 23 22 21 26 26 C 1.47189 * 106.58933 * 31.37112 * 17 16 14 27 27 H 1.09000 * 109.47274 * 302.10746 * 1 2 3 28 28 H 1.08997 * 109.47325 * 62.11377 * 1 2 3 29 29 H 1.09005 * 109.47194 * 182.10600 * 1 2 3 30 30 H 1.09001 * 110.40058 * 338.64953 * 3 2 1 31 31 H 1.09000 * 110.34400 * 216.19392 * 3 2 1 32 32 H 0.97005 * 120.00489 * 179.97438 * 8 7 5 33 33 H 1.09004 * 110.46168 * 77.14307 * 13 4 3 34 34 H 1.08993 * 110.46520 * 199.72218 * 13 4 3 35 35 H 1.09001 * 110.06860 * 348.70742 * 16 14 13 36 36 H 1.09004 * 110.06308 * 110.21596 * 16 14 13 37 37 H 1.08000 * 123.32933 * 0.04198 * 21 20 18 38 38 H 1.07998 * 122.47918 * 180.02562 * 22 21 20 39 39 H 1.08999 * 110.06411 * 87.87558 * 26 17 16 40 40 H 1.09005 * 110.06650 * 209.33053 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1215 1.4225 0.0000 4 7 2.4359 1.6944 1.4240 5 6 2.2329 2.8498 2.1302 6 1 1.6676 3.6587 1.6914 7 6 2.7536 2.9816 3.4102 8 7 3.7385 2.2019 3.8033 9 14 2.0567 4.2652 4.5746 10 1 2.8765 5.5011 4.4969 11 1 2.0834 3.7401 5.9635 12 1 0.6565 4.5750 4.1892 13 6 3.0162 0.4163 1.9033 14 6 2.1220 -0.6713 1.2684 15 1 1.3493 -1.0225 1.9521 16 6 3.0122 -1.8159 0.7571 17 7 2.5898 -2.0854 -0.6269 18 6 2.6181 -3.2746 -1.2606 19 8 2.1366 -3.3828 -2.3735 20 6 3.2277 -4.4356 -0.6111 21 6 3.2168 -5.7132 -1.0981 22 6 3.8649 -6.6108 -0.2854 23 6 4.3916 -6.0875 0.8326 24 9 5.0674 -6.7945 1.7646 25 16 4.0992 -4.4086 0.9157 26 6 2.1295 -0.8028 -1.1832 27 1 -0.3634 0.5462 0.8705 28 1 -0.3634 0.4806 -0.9083 29 1 -0.3634 -1.0270 0.0378 30 1 1.3888 2.1387 -0.3720 31 1 3.0286 1.4557 -0.6035 32 1 4.1027 2.2941 4.6976 33 1 4.0453 0.3123 1.5593 34 1 2.9696 0.3608 2.9908 35 1 4.0590 -1.5128 0.7764 36 1 2.8684 -2.7045 1.3718 37 1 2.7461 -5.9889 -2.0302 38 1 3.9455 -7.6600 -0.5284 39 1 2.9691 -0.2617 -1.6197 40 1 1.3634 -0.9763 -1.9390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092317558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:04 Heat of formation + Delta-G solvation = -2.527781 kcal Electronic energy + Delta-G solvation = -25361.816741 eV Core-core repulsion = 21605.053438 eV Total energy + Delta-G solvation = -3756.763303 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -49.29612 -40.40901 -38.78609 -37.37358 -35.12783 -32.86544 -31.06749 -30.12908 -29.61700 -26.82180 -25.99069 -25.31700 -24.64065 -22.63311 -21.22685 -20.55427 -19.68539 -18.86483 -18.10761 -16.99684 -16.70426 -16.46731 -16.23200 -15.73135 -15.26613 -14.82911 -14.70976 -14.43427 -13.98668 -13.96215 -13.45421 -13.40087 -12.99308 -12.67130 -12.52721 -12.27899 -12.22687 -11.87096 -11.73838 -11.53625 -11.16504 -10.99901 -10.84531 -10.71458 -10.35705 -10.16307 -10.10402 -9.98114 -9.81832 -9.70693 -9.03237 -8.97213 -8.70909 -8.56158 -7.01086 -5.88851 -3.15154 0.11286 0.81148 1.40609 1.98090 2.90274 3.06583 3.34275 3.42013 3.43746 4.05854 4.34817 4.41759 4.71865 4.87479 4.98580 5.05966 5.12063 5.28401 5.39179 5.46946 5.49184 5.52703 5.59022 5.69911 5.85129 5.91314 5.92071 5.98222 6.03895 6.18383 6.23655 6.33091 6.47900 6.57379 6.64935 6.79069 7.15821 7.37777 7.48464 7.62781 8.02996 8.08380 9.01324 9.67115 10.42386 11.25822 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.003585 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.597123 B = 7808.011512 C = 9084.086096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 C 0.137 3.863 4 N -0.592 5.592 5 C -0.227 4.227 6 H 0.079 0.921 7 C -0.004 4.004 8 N -0.910 5.910 9 Si 0.904 3.096 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.280 1.280 13 C 0.159 3.841 14 C -0.112 4.112 15 H 0.086 0.914 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.607 3.393 19 O -0.534 6.534 20 C -0.259 4.259 21 C -0.039 4.039 22 C -0.188 4.188 23 C -0.044 4.044 24 F -0.102 7.102 25 S 0.257 5.743 26 C 0.118 3.882 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.028 0.972 32 H 0.254 0.746 33 H 0.025 0.975 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.646 -14.804 -6.666 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C 0.010 3.990 4 N -0.315 5.315 5 C -0.355 4.355 6 H 0.097 0.903 7 C -0.201 4.201 8 N -0.556 5.556 9 Si 0.734 3.266 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.205 1.205 13 C 0.032 3.968 14 C -0.133 4.133 15 H 0.105 0.895 16 C -0.028 4.028 17 N -0.342 5.342 18 C 0.395 3.605 19 O -0.414 6.414 20 C -0.380 4.380 21 C -0.071 4.071 22 C -0.220 4.220 23 C -0.181 4.181 24 F -0.082 7.082 25 S 0.523 5.477 26 C -0.004 4.004 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.110 0.890 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.180 0.820 38 H 0.171 0.829 39 H 0.092 0.908 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.404 -13.722 -5.969 14.969 hybrid contribution -0.302 -0.907 -0.026 0.956 sum -0.706 -14.629 -5.995 15.825 Atomic orbital electron populations 1.21573 0.93161 1.00914 1.02087 1.22553 0.95824 0.97238 0.93112 1.21763 0.96762 0.91984 0.88450 1.45087 1.72078 1.09831 1.04466 1.18965 1.27701 0.92695 0.96131 0.90325 1.24728 0.97395 0.99323 0.98653 1.69955 1.24545 1.42115 1.18994 0.86236 0.78961 0.80674 0.80743 1.21627 1.21531 1.20528 1.21786 0.92005 0.82412 1.00585 1.23235 0.98321 0.94874 0.96915 0.89533 1.22559 1.00266 0.98622 0.81330 1.48460 1.63210 1.07895 1.14608 1.16352 0.79028 0.80384 0.84740 1.90836 1.47548 1.83766 1.19243 1.24500 1.12900 0.98884 1.01695 1.20417 0.96861 0.89652 1.00187 1.20244 1.03994 1.03055 0.94689 1.22680 1.03605 0.98901 0.92903 1.91522 1.77057 1.77111 1.62461 1.84272 1.47985 0.97780 1.17686 1.22472 0.99278 0.82136 0.96531 0.91515 0.92858 0.93414 0.92936 0.95434 0.93575 0.95689 0.89006 0.89902 0.91039 0.82048 0.82866 0.90768 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.64 37.15 0.32 -1.43 16 2 C -0.08 -1.34 1.10 -151.69 -0.17 -1.51 16 3 C 0.14 2.58 6.39 -2.48 -0.02 2.57 16 4 N -0.59 -13.81 3.38 -168.72 -0.57 -14.38 16 5 C -0.23 -5.94 10.34 -15.06 -0.16 -6.09 16 6 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 7 C 0.00 -0.10 5.30 -17.43 -0.09 -0.19 16 8 N -0.91 -25.16 11.01 55.49 0.61 -24.55 16 9 Si 0.90 20.96 29.60 -169.99 -5.03 15.93 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 C 0.16 3.37 5.61 -2.27 -0.01 3.35 16 14 C -0.11 -1.87 3.71 -88.28 -0.33 -2.19 16 15 H 0.09 1.43 7.93 -51.93 -0.41 1.01 16 16 C 0.10 1.37 5.12 -3.28 -0.02 1.35 16 17 N -0.61 -8.95 3.32 -172.50 -0.57 -9.52 16 18 C 0.61 9.14 7.82 -13.00 -0.10 9.04 16 19 O -0.53 -9.41 17.05 5.15 0.09 -9.32 16 20 C -0.26 -3.24 6.33 -36.87 -0.23 -3.48 16 21 C -0.04 -0.42 10.01 -40.45 -0.40 -0.82 16 22 C -0.19 -1.83 10.16 -41.33 -0.42 -2.25 16 23 C -0.04 -0.47 8.10 29.31 0.24 -0.24 16 24 F -0.10 -1.16 17.32 2.25 0.04 -1.12 16 25 S 0.26 2.82 18.78 -107.50 -2.02 0.80 16 26 C 0.12 1.74 6.29 -2.58 -0.02 1.73 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 31 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 32 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.03 0.55 7.18 -51.93 -0.37 0.18 16 34 H 0.09 2.22 6.35 -51.93 -0.33 1.89 16 35 H 0.08 1.17 7.11 -51.93 -0.37 0.80 16 36 H 0.07 0.90 5.23 -32.79 -0.17 0.73 16 37 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.07 1.08 7.15 -51.93 -0.37 0.71 16 40 H 0.08 1.15 7.59 -51.93 -0.39 0.76 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -29.43 337.10 -8.65 -38.08 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.87 Total: -0.83 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.41 Total: -0.17 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.53 Total: -48.45 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.02 Total: 0.80 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.43 -8.65 -38.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092317558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.552 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds