Wall clock time and date at job start Tue Mar 31 2020 13:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.54060 * 112.57991 * 2 1 4 4 N 1.48339 * 104.51606 * 97.43668 * 3 2 1 5 5 C 1.36928 * 128.19710 * 221.79592 * 4 3 2 6 6 H 1.08001 * 120.00171 * 8.64575 * 5 4 3 7 7 C 1.38813 * 120.00153 * 188.64669 * 5 4 3 8 8 N 1.31620 * 119.99720 * 19.56798 * 7 5 4 9 9 Si 1.86798 * 120.00276 * 199.57095 * 7 5 4 10 10 H 1.48508 * 109.46792 * 265.00195 * 9 7 5 11 11 H 1.48506 * 109.47102 * 145.00704 * 9 7 5 12 12 H 1.48494 * 109.47315 * 25.00004 * 9 7 5 13 13 C 1.48331 * 103.60216 * 41.53343 * 4 3 2 14 14 C 1.54453 * 104.32512 * 318.43352 * 13 4 3 15 15 H 1.08995 * 112.29934 * 263.01057 * 14 13 4 16 16 C 1.53744 * 109.01167 * 137.92130 * 14 13 4 17 17 N 1.47196 * 106.43185 * 229.45623 * 16 14 13 18 18 C 1.34776 * 126.70067 * 211.40971 * 17 16 14 19 19 O 1.21742 * 119.99350 * 173.97932 * 18 17 16 20 20 C 1.46338 * 120.00462 * 353.97393 * 18 17 16 21 21 C 1.36733 * 125.43977 * 174.07097 * 20 18 17 22 22 C 1.37340 * 113.33491 * 179.97438 * 21 20 18 23 23 C 1.34206 * 115.04632 * 359.97438 * 22 21 20 24 24 F 1.35094 * 124.54316 * 179.97438 * 23 22 21 25 25 S 1.70625 * 110.91498 * 359.72694 * 23 22 21 26 26 C 1.47189 * 106.58933 * 31.37112 * 17 16 14 27 27 H 1.09000 * 109.47274 * 302.10746 * 1 2 3 28 28 H 1.08997 * 109.47325 * 62.11377 * 1 2 3 29 29 H 1.09005 * 109.47194 * 182.10600 * 1 2 3 30 30 H 1.09001 * 110.40058 * 338.64953 * 3 2 1 31 31 H 1.09000 * 110.34400 * 216.19392 * 3 2 1 32 32 H 0.97005 * 120.00489 * 179.97438 * 8 7 5 33 33 H 1.09004 * 110.46168 * 77.14307 * 13 4 3 34 34 H 1.08993 * 110.46520 * 199.72218 * 13 4 3 35 35 H 1.09001 * 110.06860 * 348.70742 * 16 14 13 36 36 H 1.09004 * 110.06308 * 110.21596 * 16 14 13 37 37 H 1.08000 * 123.32933 * 0.04198 * 21 20 18 38 38 H 1.07998 * 122.47918 * 180.02562 * 22 21 20 39 39 H 1.08999 * 110.06411 * 87.87558 * 26 17 16 40 40 H 1.09005 * 110.06650 * 209.33053 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1215 1.4225 0.0000 4 7 2.4359 1.6944 1.4240 5 6 2.2329 2.8498 2.1302 6 1 1.6676 3.6587 1.6914 7 6 2.7536 2.9816 3.4102 8 7 3.7385 2.2019 3.8033 9 14 2.0567 4.2652 4.5746 10 1 2.8765 5.5011 4.4969 11 1 2.0834 3.7401 5.9635 12 1 0.6565 4.5750 4.1892 13 6 3.0162 0.4163 1.9033 14 6 2.1220 -0.6713 1.2684 15 1 1.3493 -1.0225 1.9521 16 6 3.0122 -1.8159 0.7571 17 7 2.5898 -2.0854 -0.6269 18 6 2.6181 -3.2746 -1.2606 19 8 2.1366 -3.3828 -2.3735 20 6 3.2277 -4.4356 -0.6111 21 6 3.2168 -5.7132 -1.0981 22 6 3.8649 -6.6108 -0.2854 23 6 4.3916 -6.0875 0.8326 24 9 5.0674 -6.7945 1.7646 25 16 4.0992 -4.4086 0.9157 26 6 2.1295 -0.8028 -1.1832 27 1 -0.3634 0.5462 0.8705 28 1 -0.3634 0.4806 -0.9083 29 1 -0.3634 -1.0270 0.0378 30 1 1.3888 2.1387 -0.3720 31 1 3.0286 1.4557 -0.6035 32 1 4.1027 2.2941 4.6976 33 1 4.0453 0.3123 1.5593 34 1 2.9696 0.3608 2.9908 35 1 4.0590 -1.5128 0.7764 36 1 2.8684 -2.7045 1.3718 37 1 2.7461 -5.9889 -2.0302 38 1 3.9455 -7.6600 -0.5284 39 1 2.9691 -0.2617 -1.6197 40 1 1.3634 -0.9763 -1.9390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092317558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:03 Heat of formation + Delta-G solvation = -18.846443 kcal Electronic energy + Delta-G solvation = -25362.524371 eV Core-core repulsion = 21605.053438 eV Total energy + Delta-G solvation = -3757.470933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.16643 -41.67020 -39.99498 -38.35669 -36.62333 -34.49390 -32.61959 -31.61472 -30.66040 -28.06535 -27.54512 -26.77249 -25.68885 -24.05084 -22.34653 -22.10174 -20.62355 -20.15722 -19.23674 -18.58452 -18.02462 -17.41345 -17.19150 -16.94464 -16.60505 -16.32326 -15.94698 -15.56963 -15.45435 -15.26534 -14.94641 -14.44924 -14.22942 -13.87620 -13.69570 -13.52505 -13.33461 -13.24838 -13.08534 -13.05335 -12.65583 -12.63056 -12.32693 -12.11865 -11.88299 -11.72148 -11.51937 -11.44669 -11.36202 -11.18436 -10.63547 -10.05715 -9.82978 -9.64898 -8.90672 -7.89352 -5.15669 -0.78946 -0.06539 0.53256 1.11258 1.48880 1.51702 1.60564 1.76459 1.99412 2.52504 3.18133 3.24976 3.29903 3.39883 3.62869 3.91245 3.93048 4.09162 4.15831 4.16374 4.25831 4.28163 4.55137 4.57926 4.68120 4.73033 4.77479 4.82622 4.90083 4.94985 5.02308 5.13759 5.14765 5.22042 5.26055 5.41939 5.48911 5.56442 5.70850 6.19520 6.31874 6.87366 7.04542 7.73526 8.51452 9.24728 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.003585 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.597123 B = 7808.011512 C = 9084.086096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C 0.136 3.864 4 N -0.616 5.616 5 C -0.235 4.235 6 H 0.080 0.920 7 C -0.056 4.056 8 N -0.939 5.939 9 Si 0.965 3.035 10 H -0.290 1.290 11 H -0.294 1.294 12 H -0.271 1.271 13 C 0.165 3.835 14 C -0.103 4.103 15 H 0.090 0.910 16 C 0.105 3.895 17 N -0.610 5.610 18 C 0.608 3.392 19 O -0.564 6.564 20 C -0.284 4.284 21 C -0.025 4.025 22 C -0.178 4.178 23 C -0.046 4.046 24 F -0.105 7.105 25 S 0.259 5.741 26 C 0.122 3.878 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.249 0.751 33 H 0.012 0.988 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.174 0.826 38 H 0.182 0.818 39 H 0.076 0.924 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 -16.340 -7.490 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.077 4.077 3 C 0.010 3.990 4 N -0.340 5.340 5 C -0.364 4.364 6 H 0.098 0.902 7 C -0.250 4.250 8 N -0.587 5.587 9 Si 0.794 3.206 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.196 1.196 13 C 0.039 3.961 14 C -0.124 4.124 15 H 0.108 0.892 16 C -0.019 4.019 17 N -0.342 5.342 18 C 0.399 3.601 19 O -0.445 6.445 20 C -0.404 4.404 21 C -0.058 4.058 22 C -0.210 4.210 23 C -0.184 4.184 24 F -0.084 7.084 25 S 0.526 5.474 26 C 0.000 4.000 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.192 0.808 38 H 0.199 0.801 39 H 0.094 0.906 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.125 -15.256 -6.808 16.744 hybrid contribution -0.032 -0.480 0.177 0.513 sum -1.158 -15.736 -6.631 17.116 Atomic orbital electron populations 1.21522 0.91781 1.01597 1.02222 1.22432 0.96759 0.95338 0.93203 1.21908 0.97049 0.93907 0.86136 1.45349 1.72303 1.09783 1.06518 1.19288 1.26834 0.93616 0.96613 0.90229 1.25422 0.97957 1.01598 1.00018 1.70106 1.25826 1.43923 1.18873 0.85283 0.78527 0.78358 0.78471 1.21741 1.22029 1.19597 1.21616 0.92293 0.83393 0.98810 1.23037 0.97893 0.94386 0.97109 0.89163 1.22412 0.99563 0.98488 0.81457 1.48435 1.63191 1.07946 1.14579 1.16602 0.78450 0.80704 0.84380 1.90816 1.48992 1.84249 1.20471 1.24331 1.14572 0.98698 1.02843 1.20660 0.95735 0.89021 1.00387 1.20479 1.02611 1.04239 0.93660 1.22760 1.03757 0.98599 0.93263 1.91522 1.77157 1.77068 1.62649 1.84187 1.47913 0.98366 1.16949 1.22389 0.99517 0.82163 0.95930 0.93129 0.91128 0.92273 0.92460 0.95283 0.94170 0.97036 0.92317 0.89921 0.89217 0.80819 0.80113 0.90573 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.12 8.64 71.98 0.62 -2.50 16 2 C -0.07 -2.30 1.10 -50.35 -0.06 -2.35 16 3 C 0.14 5.05 6.39 86.38 0.55 5.60 16 4 N -0.62 -29.12 3.38 -687.69 -2.33 -31.45 16 5 C -0.23 -12.42 10.34 84.04 0.87 -11.55 16 6 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 7 C -0.06 -3.01 5.30 84.86 0.45 -2.56 16 8 N -0.94 -53.38 11.01 21.65 0.24 -53.14 16 9 Si 0.96 43.70 29.60 68.60 2.03 45.73 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 13 C 0.17 7.17 5.61 86.52 0.49 7.65 16 14 C -0.10 -3.39 3.71 -9.28 -0.03 -3.42 16 15 H 0.09 2.91 7.93 -2.39 -0.02 2.89 16 16 C 0.11 2.87 5.12 86.50 0.44 3.31 16 17 N -0.61 -17.01 3.32 -817.86 -2.71 -19.72 16 18 C 0.61 17.36 7.82 86.35 0.68 18.04 16 19 O -0.56 -19.00 17.05 -4.48 -0.08 -19.08 16 20 C -0.28 -6.56 6.33 24.03 0.15 -6.41 16 21 C -0.02 -0.47 10.01 21.71 0.22 -0.25 16 22 C -0.18 -2.91 10.16 21.14 0.21 -2.69 16 23 C -0.05 -0.90 8.10 66.90 0.54 -0.35 16 24 F -0.10 -2.15 17.32 44.97 0.78 -1.37 16 25 S 0.26 5.28 18.78 -56.49 -1.06 4.21 16 26 C 0.12 3.42 6.29 86.95 0.55 3.97 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.48 16 30 H 0.06 2.05 7.92 -2.39 -0.02 2.03 16 31 H 0.03 1.08 7.18 -2.39 -0.02 1.07 16 32 H 0.25 13.80 8.31 -92.70 -0.77 13.03 16 33 H 0.01 0.53 7.18 -2.39 -0.02 0.51 16 34 H 0.06 2.94 6.35 -2.39 -0.02 2.92 16 35 H 0.08 2.30 7.11 -2.39 -0.02 2.28 16 36 H 0.09 2.14 5.23 -14.55 -0.08 2.07 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.08 2.11 7.15 -2.39 -0.02 2.10 16 40 H 0.09 2.33 7.59 -2.38 -0.02 2.31 16 Total: -1.00 -63.34 337.10 3.55 -59.78 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.01 Total: 8.56 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.68 Total: 6.49 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.80 Total: -104.32 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.08 Total: -19.08 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.78 Total: -1.37 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.06 Total: 4.21 kcal Total: -63.34 3.55 -59.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092317558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.937 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds