Wall clock time and date at job start Tue Mar 31 2020 13:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34231 * 126.28145 * 2 1 4 4 H 0.97004 * 125.74243 * 359.97438 * 3 2 1 5 5 N 1.39932 * 108.52525 * 179.97438 * 3 2 1 6 6 C 1.30536 * 108.89369 * 359.75493 * 5 3 2 7 7 Cl 1.73594 * 126.00560 * 180.26137 * 6 5 3 8 8 C 1.38074 * 126.28203 * 179.97438 * 2 1 3 9 9 C 1.47381 * 126.42103 * 359.97409 * 8 2 1 10 10 O 1.21611 * 119.99722 * 90.00106 * 9 8 2 11 11 N 1.34776 * 120.00542 * 270.00573 * 9 8 2 12 12 C 1.46492 * 120.00515 * 179.72397 * 11 9 8 13 13 H 1.09004 * 110.55984 * 36.92440 * 12 11 9 14 14 C 1.54848 * 110.63126 * 159.99558 * 12 11 9 15 15 C 1.55847 * 103.44607 * 118.49053 * 14 12 11 16 16 H 1.08996 * 115.55833 * 158.81692 * 15 14 12 17 17 C 1.55843 * 105.74039 * 287.99223 * 15 14 12 18 18 C 1.57715 * 103.12488 * 70.90930 * 17 15 14 19 19 C 1.55844 * 110.62912 * 274.02604 * 12 11 9 20 20 H 1.09001 * 115.56079 * 82.69316 * 19 12 11 21 21 N 1.50234 * 101.04898 * 32.94114 * 15 14 12 22 22 C 1.36937 * 130.83897 * 126.00818 * 21 15 14 23 23 H 1.07995 * 120.00392 * 190.19904 * 22 21 15 24 24 C 1.38810 * 119.99808 * 10.20934 * 22 21 15 25 25 N 1.31624 * 120.00281 * 9.08484 * 24 22 21 26 26 Si 1.86805 * 120.00056 * 189.08868 * 24 22 21 27 27 H 1.48502 * 109.46986 * 84.98911 * 26 24 22 28 28 H 1.48499 * 109.46985 * 204.98695 * 26 24 22 29 29 H 1.48501 * 109.46793 * 324.98837 * 26 24 22 30 30 H 1.09003 * 109.47049 * 270.02160 * 1 2 3 31 31 H 1.09001 * 109.47466 * 30.01779 * 1 2 3 32 32 H 1.08997 * 109.47198 * 150.01902 * 1 2 3 33 33 H 0.96999 * 119.99549 * 0.02562 * 11 9 8 34 34 H 1.09001 * 110.62887 * 236.98429 * 14 12 11 35 35 H 1.09001 * 110.62478 * 0.02562 * 14 12 11 36 36 H 1.09005 * 110.62592 * 190.50080 * 17 15 14 37 37 H 1.09000 * 110.62827 * 313.35895 * 17 15 14 38 38 H 1.08995 * 111.90689 * 242.53602 * 18 17 15 39 39 H 1.08997 * 110.06461 * 119.01257 * 18 17 15 40 40 H 0.96996 * 120.00114 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0048 -0.0004 5 7 3.6339 0.6553 0.0006 6 6 3.6599 -0.6498 0.0062 7 17 5.0841 -1.6422 0.0156 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0017 10 8 1.7047 -3.1015 -1.0511 11 7 1.6858 -3.1628 1.1693 12 6 1.2444 -4.5597 1.1705 13 1 1.7116 -5.1095 0.3534 14 6 1.5562 -5.2293 2.5314 15 6 0.1491 -5.6278 3.0701 16 1 0.1398 -6.4149 3.8240 17 6 -0.5390 -4.2921 3.4840 18 6 -0.8375 -3.5989 2.0992 19 6 -0.3086 -4.6449 1.0721 20 1 -0.7211 -4.5664 0.0662 21 7 -0.5721 -5.9384 1.7893 22 6 -1.2581 -7.0566 1.3964 23 1 -1.5747 -7.1628 0.3694 24 6 -1.5466 -8.0535 2.3182 25 7 -1.3229 -7.8501 3.5993 26 14 -2.2522 -9.6839 1.7407 27 1 -1.1454 -10.5836 1.3273 28 1 -3.0144 -10.3136 2.8487 29 1 -3.1576 -9.4504 0.5870 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.8298 -2.6991 2.0090 34 1 2.1781 -6.1134 2.3909 35 1 2.0389 -4.5219 3.2058 36 1 -1.4543 -4.4886 4.0424 37 1 0.1419 -3.6750 4.0702 38 1 -0.3044 -2.6540 1.9942 39 1 -1.9106 -3.4510 1.9787 40 1 -1.5242 -8.5468 4.2433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095513463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:11 Heat of formation + Delta-G solvation = 80.274836 kcal Electronic energy + Delta-G solvation = -25778.598854 eV Core-core repulsion = 22043.302398 eV Total energy + Delta-G solvation = -3735.296456 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75162 -39.75010 -38.01957 -37.00960 -33.84990 -32.96371 -32.31083 -31.44909 -29.17527 -28.99390 -28.11285 -27.14735 -24.23243 -22.84367 -22.19628 -21.26949 -20.04329 -19.39702 -18.59238 -18.05657 -17.00718 -16.44504 -15.72590 -15.47805 -15.26782 -14.97193 -14.72245 -14.18909 -13.88310 -13.70027 -13.42481 -13.21852 -12.70257 -12.35989 -12.23090 -12.16917 -11.92016 -11.71305 -11.49142 -11.04581 -10.95238 -10.89756 -10.86286 -10.79157 -10.19904 -10.06231 -9.94017 -9.73115 -9.70352 -9.45203 -9.24960 -8.97596 -8.84148 -8.48010 -6.87427 -5.75298 -3.10060 1.23950 1.26241 1.96324 2.61450 2.76162 3.40939 3.46408 3.47149 3.59081 4.24208 4.47203 4.54833 4.80565 5.05225 5.13063 5.22821 5.37369 5.43270 5.50359 5.56720 5.72040 5.81620 5.86511 5.91449 6.09359 6.15316 6.30202 6.32671 6.56208 6.58960 6.67361 6.69220 6.80851 6.97854 6.99529 7.02085 7.29208 7.54637 7.72732 7.86696 8.12866 8.51409 9.08903 9.73019 10.55861 11.37197 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.003416 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.393388 B = 8194.156232 C = 8585.532605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.144 3.856 3 N -0.449 5.449 4 H 0.447 0.553 5 N -0.280 5.280 6 C 0.159 3.841 7 Cl 0.021 6.979 8 C -0.266 4.266 9 C 0.591 3.409 10 O -0.530 6.530 11 N -0.700 5.700 12 C 0.129 3.871 13 H 0.084 0.916 14 C -0.143 4.143 15 C 0.159 3.841 16 H 0.139 0.861 17 C -0.129 4.129 18 C -0.133 4.133 19 C 0.128 3.872 20 H 0.085 0.915 21 N -0.588 5.588 22 C -0.213 4.213 23 H 0.078 0.922 24 C -0.009 4.009 25 N -0.919 5.919 26 Si 0.913 3.087 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.396 0.604 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 18.600 -2.387 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.012 3.988 3 N -0.159 5.159 4 H 0.293 0.707 5 N -0.106 5.106 6 C -0.033 4.033 7 Cl 0.049 6.951 8 C -0.281 4.281 9 C 0.374 3.626 10 O -0.406 6.406 11 N -0.350 5.350 12 C 0.023 3.977 13 H 0.102 0.898 14 C -0.183 4.183 15 C 0.053 3.947 16 H 0.157 0.843 17 C -0.168 4.168 18 C -0.173 4.173 19 C 0.019 3.981 20 H 0.103 0.897 21 N -0.308 5.308 22 C -0.341 4.341 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.566 5.566 26 Si 0.743 3.257 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.213 18.769 -3.100 20.345 hybrid contribution -0.653 -0.758 0.123 1.008 sum 6.560 18.010 -2.977 19.398 Atomic orbital electron populations 1.20675 0.85500 1.05241 1.04688 1.21456 0.94914 0.85897 0.96520 1.45830 1.03019 1.08624 1.58412 0.70667 1.77133 0.96591 1.10768 1.26067 1.22572 0.88884 0.90452 1.01415 1.98427 1.35226 1.64768 1.96712 1.19946 0.90983 0.94968 1.22230 1.17075 0.77181 0.84013 0.84313 1.90804 1.51064 1.67328 1.31401 1.46216 1.67225 1.13976 1.07566 1.22669 0.97028 0.79024 0.98994 0.89827 1.23300 1.00855 0.99200 0.94939 1.23366 0.86189 0.94402 0.90771 0.84340 1.23438 1.00278 0.97782 0.95300 1.23398 0.99595 0.97114 0.97161 1.23161 0.92115 0.87515 0.95304 0.89728 1.46426 1.59592 1.11324 1.13501 1.19013 1.27744 0.93359 0.94013 0.90450 1.24735 1.01541 0.99125 0.95095 1.69670 1.53898 1.33041 0.99968 0.86120 0.78493 0.83718 0.77349 1.21574 1.21779 1.20756 0.88739 0.90038 0.88383 0.76971 0.91618 0.92502 0.92173 0.94021 0.92921 0.93155 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.25 36.00 0.37 -0.35 16 2 C 0.14 1.40 7.29 -81.61 -0.60 0.81 16 3 N -0.45 -3.82 7.28 33.86 0.25 -3.57 16 4 H 0.45 2.01 8.96 -182.72 -1.64 0.37 16 5 N -0.28 -3.32 12.64 33.17 0.42 -2.90 16 6 C 0.16 2.08 7.89 -16.90 -0.13 1.94 16 7 Cl 0.02 0.26 29.19 -51.86 -1.51 -1.25 16 8 C -0.27 -3.46 5.88 -105.04 -0.62 -4.08 16 9 C 0.59 9.20 7.17 -12.54 -0.09 9.11 16 10 O -0.53 -10.37 16.83 5.27 0.09 -10.28 16 11 N -0.70 -10.24 3.60 -52.49 -0.19 -10.43 16 12 C 0.13 2.32 3.08 -65.44 -0.20 2.12 16 13 H 0.08 1.70 7.69 -51.93 -0.40 1.30 16 14 C -0.14 -2.60 6.22 -24.24 -0.15 -2.75 16 15 C 0.16 3.48 4.57 -62.80 -0.29 3.19 16 16 H 0.14 3.48 5.91 -51.93 -0.31 3.17 16 17 C -0.13 -2.42 6.58 -22.63 -0.15 -2.57 16 18 C -0.13 -2.32 6.48 -22.63 -0.15 -2.47 16 19 C 0.13 2.58 5.30 -62.80 -0.33 2.25 16 20 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 21 N -0.59 -14.27 2.98 -145.82 -0.43 -14.70 16 22 C -0.21 -5.79 10.55 -15.06 -0.16 -5.95 16 23 H 0.08 2.08 7.84 -52.49 -0.41 1.66 16 24 C -0.01 -0.24 5.46 -17.43 -0.10 -0.34 16 25 N -0.92 -25.78 10.76 55.49 0.60 -25.19 16 26 Si 0.91 21.79 29.56 -169.99 -5.03 16.77 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.87 7.96 -51.93 -0.41 0.46 16 33 H 0.40 4.95 8.00 -40.82 -0.33 4.62 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.87 7.38 -51.93 -0.38 0.49 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.04 0.66 7.85 -51.93 -0.41 0.25 16 38 H 0.05 0.76 6.46 -51.93 -0.34 0.42 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 346.13 15.07 5.22 5.22 Total: -1.00 -32.41 346.13 -9.48 -41.89 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.29 Total: 3.54 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -2.59 Total: 0.91 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.64 Total: -56.79 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.51 Total: -1.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.41 -9.48 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095513463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.166 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds