Wall clock time and date at job start Tue Mar 31 2020 13:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34231 * 126.28145 * 2 1 4 4 H 0.97004 * 125.74243 * 359.97438 * 3 2 1 5 5 N 1.39932 * 108.52525 * 179.97438 * 3 2 1 6 6 C 1.30536 * 108.89369 * 359.75493 * 5 3 2 7 7 Cl 1.73594 * 126.00560 * 180.26137 * 6 5 3 8 8 C 1.38074 * 126.28203 * 179.97438 * 2 1 3 9 9 C 1.47381 * 126.42103 * 359.97409 * 8 2 1 10 10 O 1.21611 * 119.99722 * 90.00106 * 9 8 2 11 11 N 1.34776 * 120.00542 * 270.00573 * 9 8 2 12 12 C 1.46492 * 120.00515 * 179.72397 * 11 9 8 13 13 H 1.09004 * 110.55984 * 36.92440 * 12 11 9 14 14 C 1.54848 * 110.63126 * 159.99558 * 12 11 9 15 15 C 1.55847 * 103.44607 * 118.49053 * 14 12 11 16 16 H 1.08996 * 115.55833 * 158.81692 * 15 14 12 17 17 C 1.55843 * 105.74039 * 287.99223 * 15 14 12 18 18 C 1.57715 * 103.12488 * 70.90930 * 17 15 14 19 19 C 1.55844 * 110.62912 * 274.02604 * 12 11 9 20 20 H 1.09001 * 115.56079 * 82.69316 * 19 12 11 21 21 N 1.50234 * 101.04898 * 32.94114 * 15 14 12 22 22 C 1.36937 * 130.83897 * 126.00818 * 21 15 14 23 23 H 1.07995 * 120.00392 * 190.19904 * 22 21 15 24 24 C 1.38810 * 119.99808 * 10.20934 * 22 21 15 25 25 N 1.31624 * 120.00281 * 9.08484 * 24 22 21 26 26 Si 1.86805 * 120.00056 * 189.08868 * 24 22 21 27 27 H 1.48502 * 109.46986 * 84.98911 * 26 24 22 28 28 H 1.48499 * 109.46985 * 204.98695 * 26 24 22 29 29 H 1.48501 * 109.46793 * 324.98837 * 26 24 22 30 30 H 1.09003 * 109.47049 * 270.02160 * 1 2 3 31 31 H 1.09001 * 109.47466 * 30.01779 * 1 2 3 32 32 H 1.08997 * 109.47198 * 150.01902 * 1 2 3 33 33 H 0.96999 * 119.99549 * 0.02562 * 11 9 8 34 34 H 1.09001 * 110.62887 * 236.98429 * 14 12 11 35 35 H 1.09001 * 110.62478 * 0.02562 * 14 12 11 36 36 H 1.09005 * 110.62592 * 190.50080 * 17 15 14 37 37 H 1.09000 * 110.62827 * 313.35895 * 17 15 14 38 38 H 1.08995 * 111.90689 * 242.53602 * 18 17 15 39 39 H 1.08997 * 110.06461 * 119.01257 * 18 17 15 40 40 H 0.96996 * 120.00114 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0048 -0.0004 5 7 3.6339 0.6553 0.0006 6 6 3.6599 -0.6498 0.0062 7 17 5.0841 -1.6422 0.0156 8 6 2.3240 -1.1130 0.0005 9 6 1.8858 -2.5202 0.0017 10 8 1.7047 -3.1015 -1.0511 11 7 1.6858 -3.1628 1.1693 12 6 1.2444 -4.5597 1.1705 13 1 1.7116 -5.1095 0.3534 14 6 1.5562 -5.2293 2.5314 15 6 0.1491 -5.6278 3.0701 16 1 0.1398 -6.4149 3.8240 17 6 -0.5390 -4.2921 3.4840 18 6 -0.8375 -3.5989 2.0992 19 6 -0.3086 -4.6449 1.0721 20 1 -0.7211 -4.5664 0.0662 21 7 -0.5721 -5.9384 1.7893 22 6 -1.2581 -7.0566 1.3964 23 1 -1.5747 -7.1628 0.3694 24 6 -1.5466 -8.0535 2.3182 25 7 -1.3229 -7.8501 3.5993 26 14 -2.2522 -9.6839 1.7407 27 1 -1.1454 -10.5836 1.3273 28 1 -3.0144 -10.3136 2.8487 29 1 -3.1576 -9.4504 0.5870 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8901 -0.5135 33 1 1.8298 -2.6991 2.0090 34 1 2.1781 -6.1134 2.3909 35 1 2.0389 -4.5219 3.2058 36 1 -1.4543 -4.4886 4.0424 37 1 0.1419 -3.6750 4.0702 38 1 -0.3044 -2.6540 1.9942 39 1 -1.9106 -3.4510 1.9787 40 1 -1.5242 -8.5468 4.2433 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095513463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:10 Heat of formation + Delta-G solvation = 58.475945 kcal Electronic energy + Delta-G solvation = -25779.544125 eV Core-core repulsion = 22043.302398 eV Total energy + Delta-G solvation = -3736.241727 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.62368 -41.20604 -39.44448 -37.93626 -35.39064 -34.13945 -33.71303 -32.39796 -30.87340 -30.59373 -29.34805 -28.23639 -26.08171 -24.01712 -23.04902 -22.70305 -21.51988 -20.78451 -20.11821 -19.08968 -18.70722 -17.57988 -16.88673 -16.79031 -16.39602 -16.32040 -16.18584 -15.84550 -15.23845 -14.99322 -14.31190 -14.06397 -14.02811 -13.84936 -13.36815 -13.31223 -13.16970 -12.98377 -12.82068 -12.79644 -12.76109 -12.57507 -12.28897 -11.94999 -11.90804 -11.84562 -11.53005 -11.27642 -11.03184 -10.82948 -10.74015 -10.54145 -9.95745 -9.87364 -8.79002 -7.80738 -5.15646 0.37170 0.47123 1.01709 1.47919 1.49975 1.55198 1.57011 1.85960 2.35775 2.55060 3.35229 3.50116 3.57652 3.77204 3.90812 4.02767 4.11132 4.17155 4.24105 4.39758 4.54161 4.66543 4.68318 4.70642 4.77000 4.80226 4.85414 5.03562 5.08543 5.15283 5.18816 5.26758 5.39368 5.52615 5.60526 5.79011 5.90882 5.99396 6.24967 6.26069 6.64575 7.06308 7.31122 7.71772 8.60306 9.29651 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.003416 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.393388 B = 8194.156232 C = 8585.532605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.170 3.830 3 N -0.426 5.426 4 H 0.467 0.533 5 N -0.294 5.294 6 C 0.149 3.851 7 Cl 0.014 6.986 8 C -0.299 4.299 9 C 0.601 3.399 10 O -0.575 6.575 11 N -0.685 5.685 12 C 0.147 3.853 13 H 0.056 0.944 14 C -0.128 4.128 15 C 0.145 3.855 16 H 0.104 0.896 17 C -0.119 4.119 18 C -0.115 4.115 19 C 0.120 3.880 20 H 0.068 0.932 21 N -0.616 5.616 22 C -0.226 4.226 23 H 0.069 0.931 24 C -0.058 4.058 25 N -0.940 5.940 26 Si 0.969 3.031 27 H -0.289 1.289 28 H -0.293 1.293 29 H -0.276 1.276 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.412 0.588 34 H 0.051 0.949 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 21.583 -2.049 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.036 3.964 3 N -0.138 5.138 4 H 0.317 0.683 5 N -0.120 5.120 6 C -0.043 4.043 7 Cl 0.041 6.959 8 C -0.314 4.314 9 C 0.386 3.614 10 O -0.454 6.454 11 N -0.336 5.336 12 C 0.040 3.960 13 H 0.074 0.926 14 C -0.168 4.168 15 C 0.039 3.961 16 H 0.121 0.879 17 C -0.158 4.158 18 C -0.154 4.154 19 C 0.012 3.988 20 H 0.087 0.913 21 N -0.338 5.338 22 C -0.355 4.355 23 H 0.087 0.913 24 C -0.252 4.252 25 N -0.588 5.588 26 Si 0.799 3.201 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.201 1.201 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.250 0.750 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.268 21.836 -2.746 23.177 hybrid contribution -0.668 -1.591 -0.037 1.726 sum 6.600 20.245 -2.783 21.475 Atomic orbital electron populations 1.20856 0.83172 1.05982 1.06244 1.21764 0.95950 0.85012 0.93692 1.45837 1.01807 1.09503 1.56642 0.68272 1.77090 0.98339 1.10154 1.26393 1.22617 0.88720 0.90843 1.02143 1.98419 1.35612 1.65051 1.96768 1.19733 0.91700 0.94111 1.25889 1.17352 0.75786 0.84836 0.83456 1.90788 1.52895 1.68674 1.33044 1.45966 1.66749 1.12488 1.08412 1.22139 0.95238 0.80682 0.97921 0.92595 1.23141 0.98704 0.99616 0.95343 1.23313 0.88307 0.95019 0.89453 0.87890 1.23317 0.99644 0.96784 0.96102 1.23298 0.99604 0.97597 0.94947 1.23293 0.93570 0.86883 0.95044 0.91335 1.46676 1.59940 1.12067 1.15127 1.19237 1.27560 0.94875 0.93809 0.91278 1.25394 1.02690 1.01783 0.95331 1.69859 1.55033 1.33409 1.00534 0.85226 0.77733 0.80283 0.76875 1.21673 1.21939 1.20103 0.86582 0.86684 0.90301 0.75041 0.93043 0.88610 0.94765 0.89964 0.88911 0.93852 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.25 71.23 0.73 -0.27 16 2 C 0.17 2.69 7.29 42.15 0.31 2.99 16 3 N -0.43 -5.63 7.28 -46.79 -0.34 -5.97 16 4 H 0.47 2.13 8.96 -213.42 -1.91 0.21 16 5 N -0.29 -6.20 12.64 -48.96 -0.62 -6.82 16 6 C 0.15 3.60 7.89 85.66 0.68 4.27 16 7 Cl 0.01 0.33 29.19 -2.72 -0.08 0.25 16 8 C -0.30 -7.09 5.88 -20.13 -0.12 -7.21 16 9 C 0.60 17.83 7.17 86.65 0.62 18.45 16 10 O -0.58 -22.49 16.83 -4.07 -0.07 -22.56 16 11 N -0.69 -18.54 3.60 -438.22 -1.58 -20.12 16 12 C 0.15 5.20 3.08 46.61 0.14 5.35 16 13 H 0.06 2.32 7.69 -2.38 -0.02 2.30 16 14 C -0.13 -4.53 6.22 32.21 0.20 -4.33 16 15 C 0.15 6.33 4.57 46.23 0.21 6.54 16 16 H 0.10 5.31 5.91 -2.39 -0.01 5.30 16 17 C -0.12 -4.27 6.58 33.25 0.22 -4.05 16 18 C -0.12 -3.76 6.48 33.25 0.22 -3.55 16 19 C 0.12 4.82 5.30 46.23 0.25 5.07 16 20 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 21 N -0.62 -30.52 2.98 -615.27 -1.83 -32.35 16 22 C -0.23 -12.63 10.55 84.03 0.89 -11.75 16 23 H 0.07 3.84 7.84 -2.91 -0.02 3.82 16 24 C -0.06 -3.27 5.46 84.86 0.46 -2.81 16 25 N -0.94 -54.29 10.76 21.65 0.23 -54.06 16 26 Si 0.97 45.86 29.56 68.60 2.03 47.89 16 27 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 28 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 1.17 7.96 -2.39 -0.02 1.15 16 33 H 0.41 8.68 8.00 -92.71 -0.74 7.94 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.10 2.61 7.38 -2.39 -0.02 2.59 16 36 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.08 2.27 7.85 -2.39 -0.02 2.25 16 38 H 0.09 2.27 6.46 -2.39 -0.02 2.26 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -74.16 346.13 1.00 -73.16 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -1.55 Total: 11.86 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 4.80 Total: 8.71 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -4.13 Total: -119.32 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.07 Total: -22.56 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -0.08 Total: 0.25 kcal Total: -74.16 1.00 -73.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095513463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.641 kcal (2) G-P(sol) polarization free energy of solvation -74.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds