Wall clock time and date at job start Tue Mar 31 2020 13:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99791 * 2 1 4 4 H 1.48496 * 109.47038 * 85.01435 * 3 2 1 5 5 H 1.48498 * 109.47074 * 205.01899 * 3 2 1 6 6 H 1.48502 * 109.47166 * 325.01660 * 3 2 1 7 7 C 1.38812 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00475 * 20.54509 * 7 2 1 9 9 N 1.36940 * 119.99509 * 200.54479 * 7 2 1 10 10 C 1.48334 * 128.19864 * 16.24708 * 9 7 2 11 11 C 1.54462 * 104.30806 * 138.23314 * 10 9 7 12 12 H 1.08998 * 111.93360 * 263.69471 * 11 10 9 13 13 C 1.54145 * 108.79837 * 139.51659 * 11 10 9 14 14 C 1.54836 * 104.35256 * 224.04713 * 13 11 10 15 15 C 1.54832 * 102.72930 * 38.22660 * 14 13 11 16 16 C 1.55101 * 104.63543 * 25.20146 * 11 10 9 17 17 N 1.46499 * 111.99593 * 237.60005 * 16 11 10 18 18 C 1.34777 * 119.99866 * 179.97438 * 17 16 11 19 19 O 1.21744 * 119.99734 * 359.97438 * 18 17 16 20 20 C 1.46287 * 120.00455 * 179.97438 * 18 17 16 21 21 S 1.75826 * 125.46053 * 359.69092 * 20 18 17 22 22 C 1.70600 * 91.60577 * 179.97438 * 21 20 18 23 23 C 1.33738 * 111.04146 * 0.32697 * 22 21 20 24 24 C 1.36922 * 125.47099 * 179.97438 * 20 18 17 25 25 F 1.35104 * 123.40294 * 359.94272 * 24 20 18 26 26 C 1.48338 * 128.19220 * 195.93222 * 9 7 2 27 27 H 0.97007 * 119.99891 * 185.20272 * 1 2 3 28 28 H 1.09003 * 110.46836 * 256.94490 * 10 9 7 29 29 H 1.09004 * 110.46515 * 19.40300 * 10 9 7 30 30 H 1.08999 * 110.46090 * 342.76842 * 13 11 10 31 31 H 1.09007 * 110.45383 * 105.32660 * 13 11 10 32 32 H 1.08998 * 110.75991 * 156.54010 * 14 13 11 33 33 H 1.08997 * 110.75805 * 279.91997 * 14 13 11 34 34 H 1.09005 * 110.45615 * 80.49523 * 15 14 13 35 35 H 1.09004 * 110.45591 * 202.92389 * 15 14 13 36 36 H 0.96996 * 120.00560 * 359.97438 * 17 16 11 37 37 H 1.08005 * 124.48165 * 180.02562 * 22 21 20 38 38 H 1.07993 * 122.45417 * 179.72719 * 23 22 21 39 39 H 1.08993 * 110.46746 * 340.46653 * 26 9 7 40 40 H 1.09001 * 110.46985 * 103.06137 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 1.3947 5 1 3.5963 1.4121 -0.5921 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 -0.0005 8 1 1.5218 -2.1076 -0.3291 9 7 3.3143 -1.2400 0.4157 10 6 4.0578 -0.2214 1.1967 11 6 4.8784 -1.0445 2.2140 12 1 4.3770 -1.1154 3.1792 13 6 6.2825 -0.4211 2.3400 14 6 7.2443 -1.6343 2.3200 15 6 6.5860 -2.5745 1.2808 16 6 5.0515 -2.4334 1.5457 17 7 4.5198 -3.5138 2.3800 18 6 4.5864 -4.7903 1.9526 19 8 5.0879 -5.0453 0.8730 20 6 4.0560 -5.8694 2.7859 21 16 3.3117 -5.6663 4.3658 22 6 3.0460 -7.3454 4.5096 23 6 3.5007 -7.9973 3.4341 24 6 4.0646 -7.2000 2.4632 25 9 4.5753 -7.6821 1.3090 26 6 4.3159 -2.3121 0.1976 27 1 -0.4850 -0.8367 0.0762 28 1 4.7200 0.3495 0.5457 29 1 3.3652 0.4440 1.7122 30 1 6.4837 0.2385 1.4958 31 1 6.3748 0.1229 3.2801 32 1 8.2394 -1.3331 1.9929 33 1 7.2861 -2.1103 3.2997 34 1 6.8355 -2.2573 0.2682 35 1 6.9021 -3.6047 1.4450 36 1 4.1199 -3.3106 3.2400 37 1 2.5772 -7.8197 5.3592 38 1 3.4304 -9.0703 3.3342 39 1 3.8213 -3.2510 -0.0510 40 1 5.0135 -2.0276 -0.5901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098823243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:11 Heat of formation + Delta-G solvation = -12.635087 kcal Electronic energy + Delta-G solvation = -25954.383537 eV Core-core repulsion = 22197.181949 eV Total energy + Delta-G solvation = -3757.201588 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.91027 -40.30432 -38.47301 -37.29135 -34.62698 -33.58840 -31.82698 -30.40778 -29.33249 -27.90997 -25.24137 -25.17743 -23.93693 -22.07866 -20.82538 -20.18562 -19.82957 -18.91382 -18.54964 -17.49092 -16.92332 -16.05177 -15.94158 -15.83569 -15.17472 -14.81521 -14.62975 -14.47619 -14.20217 -13.99659 -13.72697 -13.26058 -13.14145 -12.70940 -12.61765 -12.44345 -12.14319 -11.71282 -11.45533 -11.37678 -11.07460 -10.85631 -10.80261 -10.72112 -10.47237 -10.39193 -9.89460 -9.80237 -9.50962 -9.22119 -9.16685 -8.89473 -8.72344 -8.55420 -7.06732 -6.32076 -3.21105 0.16353 1.07592 1.48682 1.95907 3.15700 3.26813 3.40948 3.54553 3.68261 4.06841 4.54971 4.62844 4.66065 4.73290 4.79495 5.00239 5.03691 5.21865 5.38204 5.41711 5.51215 5.56769 5.61020 5.66627 5.75496 5.85665 5.89806 6.02848 6.05185 6.14010 6.21267 6.33380 6.40915 6.49004 6.54097 6.68465 6.74957 6.98308 7.58033 7.67656 8.32366 8.33479 9.02680 9.55197 10.31102 11.17371 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.004534 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.197593 B = 6173.439039 C = 7012.493870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.018 4.018 3 Si 1.053 2.947 4 H -0.296 1.296 5 H -0.282 1.282 6 H -0.300 1.300 7 C -0.312 4.312 8 H 0.075 0.925 9 N -0.606 5.606 10 C 0.111 3.889 11 C -0.108 4.108 12 H 0.080 0.920 13 C -0.117 4.117 14 C -0.123 4.123 15 C -0.118 4.118 16 C 0.161 3.839 17 N -0.695 5.695 18 C 0.589 3.411 19 O -0.516 6.516 20 C -0.308 4.308 21 S 0.256 5.744 22 C -0.214 4.214 23 C -0.178 4.178 24 C 0.157 3.843 25 F -0.104 7.104 26 C 0.129 3.871 27 H 0.262 0.738 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.394 0.606 37 H 0.179 0.821 38 H 0.157 0.843 39 H 0.060 0.940 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.570 -11.153 13.481 20.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.218 4.218 3 Si 0.885 3.115 4 H -0.225 1.225 5 H -0.208 1.208 6 H -0.228 1.228 7 C -0.439 4.439 8 H 0.093 0.907 9 N -0.331 5.331 10 C -0.015 4.015 11 C -0.129 4.129 12 H 0.099 0.901 13 C -0.155 4.155 14 C -0.160 4.160 15 C -0.157 4.157 16 C 0.074 3.926 17 N -0.345 5.345 18 C 0.375 3.625 19 O -0.394 6.394 20 C -0.429 4.429 21 S 0.522 5.478 22 C -0.352 4.352 23 C -0.210 4.210 24 C 0.123 3.877 25 F -0.082 7.082 26 C 0.002 3.998 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.229 0.771 37 H 0.197 0.803 38 H 0.175 0.825 39 H 0.078 0.922 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.276 -8.460 13.420 19.463 hybrid contribution 0.154 -3.112 -0.509 3.157 sum 11.430 -11.572 12.911 20.766 Atomic orbital electron populations 1.70870 1.05922 1.29290 1.50413 1.25934 0.96363 1.00706 0.98752 0.83983 0.75020 0.76589 0.75924 1.22455 1.20772 1.22766 1.20096 0.84069 0.96382 1.43373 0.90711 1.45527 1.08271 1.17765 1.61527 1.22359 0.94283 0.92694 0.92197 1.23017 0.96404 0.93983 0.99495 0.90124 1.22454 0.93712 0.97383 1.01954 1.22507 0.98296 0.96195 0.99042 1.23007 0.93219 0.99987 0.99519 1.22191 0.92916 0.84802 0.92715 1.45650 1.61362 1.05294 1.22173 1.16589 0.79187 0.81569 0.85188 1.90876 1.44542 1.83133 1.20804 1.24809 1.17013 0.97423 1.03678 1.83164 1.52044 1.02885 1.09696 1.25095 1.06614 0.99780 1.03718 1.19836 1.04691 1.02439 0.94015 1.16883 0.97006 0.89733 0.84100 1.91581 1.83788 1.87719 1.45129 1.21985 0.91776 0.93772 0.92302 0.92783 0.94081 0.91827 0.90918 0.91626 0.91670 0.91943 0.90418 0.91255 0.77127 0.80331 0.82520 0.92165 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.01 13.70 55.49 0.76 -28.25 16 2 C -0.02 -0.52 5.47 -17.43 -0.10 -0.62 16 3 Si 1.05 26.36 24.97 -169.99 -4.24 22.12 16 4 H -0.30 -6.98 6.76 56.52 0.38 -6.60 16 5 H -0.28 -6.64 5.93 56.52 0.34 -6.30 16 6 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 7 C -0.31 -9.03 10.63 -15.06 -0.16 -9.19 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 9 N -0.61 -14.98 3.21 -168.71 -0.54 -15.52 16 10 C 0.11 2.33 4.23 -2.26 -0.01 2.32 16 11 C -0.11 -1.79 3.67 -88.14 -0.32 -2.11 16 12 H 0.08 1.24 7.74 -51.93 -0.40 0.84 16 13 C -0.12 -1.54 6.36 -25.17 -0.16 -1.70 16 14 C -0.12 -1.50 6.90 -24.80 -0.17 -1.67 16 15 C -0.12 -1.79 5.75 -23.96 -0.14 -1.93 16 16 C 0.16 2.79 0.92 -128.35 -0.12 2.67 16 17 N -0.69 -11.17 5.29 -45.83 -0.24 -11.41 16 18 C 0.59 10.16 6.89 -13.03 -0.09 10.07 16 19 O -0.52 -10.57 13.76 5.15 0.07 -10.50 16 20 C -0.31 -4.36 6.45 -36.83 -0.24 -4.60 16 21 S 0.26 2.47 22.14 -107.50 -2.38 0.08 16 22 C -0.21 -1.72 10.91 29.15 0.32 -1.40 16 23 C -0.18 -1.75 10.15 -41.35 -0.42 -2.17 16 24 C 0.16 2.16 7.47 -40.25 -0.30 1.86 16 25 F -0.10 -1.66 16.43 2.25 0.04 -1.62 16 26 C 0.13 2.81 6.11 -2.48 -0.02 2.79 16 27 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 28 H 0.04 0.85 5.94 -51.93 -0.31 0.54 16 29 H 0.06 1.42 5.09 -51.93 -0.26 1.15 16 30 H 0.07 0.97 7.19 -51.93 -0.37 0.60 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.20 7.26 -51.93 -0.38 0.82 16 35 H 0.07 1.10 6.83 -51.93 -0.35 0.75 16 36 H 0.39 5.44 7.43 -40.82 -0.30 5.13 16 37 H 0.18 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.06 1.45 6.81 -51.93 -0.35 1.10 16 40 H 0.04 0.83 7.23 -51.93 -0.38 0.45 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -34.45 330.08 -8.37 -42.83 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -4.89 Total: 2.97 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.92 Total: -5.67 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.02 Total: -55.18 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -4.24 Total: 22.12 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.38 Total: 0.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.45 -8.37 -42.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098823243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.191 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds