Wall clock time and date at job start Tue Mar 31 2020 13:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99791 * 2 1 4 4 H 1.48496 * 109.47038 * 85.01435 * 3 2 1 5 5 H 1.48498 * 109.47074 * 205.01899 * 3 2 1 6 6 H 1.48502 * 109.47166 * 325.01660 * 3 2 1 7 7 C 1.38812 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00475 * 20.54509 * 7 2 1 9 9 N 1.36940 * 119.99509 * 200.54479 * 7 2 1 10 10 C 1.48334 * 128.19864 * 16.24708 * 9 7 2 11 11 C 1.54462 * 104.30806 * 138.23314 * 10 9 7 12 12 H 1.08998 * 111.93360 * 263.69471 * 11 10 9 13 13 C 1.54145 * 108.79837 * 139.51659 * 11 10 9 14 14 C 1.54836 * 104.35256 * 224.04713 * 13 11 10 15 15 C 1.54832 * 102.72930 * 38.22660 * 14 13 11 16 16 C 1.55101 * 104.63543 * 25.20146 * 11 10 9 17 17 N 1.46499 * 111.99593 * 237.60005 * 16 11 10 18 18 C 1.34777 * 119.99866 * 179.97438 * 17 16 11 19 19 O 1.21744 * 119.99734 * 359.97438 * 18 17 16 20 20 C 1.46287 * 120.00455 * 179.97438 * 18 17 16 21 21 S 1.75826 * 125.46053 * 359.69092 * 20 18 17 22 22 C 1.70600 * 91.60577 * 179.97438 * 21 20 18 23 23 C 1.33738 * 111.04146 * 0.32697 * 22 21 20 24 24 C 1.36922 * 125.47099 * 179.97438 * 20 18 17 25 25 F 1.35104 * 123.40294 * 359.94272 * 24 20 18 26 26 C 1.48338 * 128.19220 * 195.93222 * 9 7 2 27 27 H 0.97007 * 119.99891 * 185.20272 * 1 2 3 28 28 H 1.09003 * 110.46836 * 256.94490 * 10 9 7 29 29 H 1.09004 * 110.46515 * 19.40300 * 10 9 7 30 30 H 1.08999 * 110.46090 * 342.76842 * 13 11 10 31 31 H 1.09007 * 110.45383 * 105.32660 * 13 11 10 32 32 H 1.08998 * 110.75991 * 156.54010 * 14 13 11 33 33 H 1.08997 * 110.75805 * 279.91997 * 14 13 11 34 34 H 1.09005 * 110.45615 * 80.49523 * 15 14 13 35 35 H 1.09004 * 110.45591 * 202.92389 * 15 14 13 36 36 H 0.96996 * 120.00560 * 359.97438 * 17 16 11 37 37 H 1.08005 * 124.48165 * 180.02562 * 22 21 20 38 38 H 1.07993 * 122.45417 * 179.72719 * 23 22 21 39 39 H 1.08993 * 110.46746 * 340.46653 * 26 9 7 40 40 H 1.09001 * 110.46985 * 103.06137 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 1.3947 5 1 3.5963 1.4121 -0.5921 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 -0.0005 8 1 1.5218 -2.1076 -0.3291 9 7 3.3143 -1.2400 0.4157 10 6 4.0578 -0.2214 1.1967 11 6 4.8784 -1.0445 2.2140 12 1 4.3770 -1.1154 3.1792 13 6 6.2825 -0.4211 2.3400 14 6 7.2443 -1.6343 2.3200 15 6 6.5860 -2.5745 1.2808 16 6 5.0515 -2.4334 1.5457 17 7 4.5198 -3.5138 2.3800 18 6 4.5864 -4.7903 1.9526 19 8 5.0879 -5.0453 0.8730 20 6 4.0560 -5.8694 2.7859 21 16 3.3117 -5.6663 4.3658 22 6 3.0460 -7.3454 4.5096 23 6 3.5007 -7.9973 3.4341 24 6 4.0646 -7.2000 2.4632 25 9 4.5753 -7.6821 1.3090 26 6 4.3159 -2.3121 0.1976 27 1 -0.4850 -0.8367 0.0762 28 1 4.7200 0.3495 0.5457 29 1 3.3652 0.4440 1.7122 30 1 6.4837 0.2385 1.4958 31 1 6.3748 0.1229 3.2801 32 1 8.2394 -1.3331 1.9929 33 1 7.2861 -2.1103 3.2997 34 1 6.8355 -2.2573 0.2682 35 1 6.9021 -3.6047 1.4450 36 1 4.1199 -3.3106 3.2400 37 1 2.5772 -7.8197 5.3592 38 1 3.4304 -9.0703 3.3342 39 1 3.8213 -3.2510 -0.0510 40 1 5.0135 -2.0276 -0.5901 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098823243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:10 Heat of formation + Delta-G solvation = -37.379348 kcal Electronic energy + Delta-G solvation = -25955.456528 eV Core-core repulsion = 22197.181949 eV Total energy + Delta-G solvation = -3758.274580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.03815 -41.68601 -39.77674 -38.25881 -36.37857 -34.89882 -33.90906 -31.55970 -30.64610 -29.48219 -26.65706 -26.38818 -25.46733 -23.38353 -22.35011 -21.49743 -20.89805 -20.29300 -19.80901 -19.34435 -18.16454 -17.39615 -17.07510 -17.03697 -16.57213 -16.22389 -16.03424 -15.75577 -15.38863 -15.19266 -15.12610 -14.92061 -14.60886 -14.17930 -14.10694 -13.59421 -13.23212 -13.07957 -12.92871 -12.76708 -12.55094 -12.22129 -12.16378 -12.05013 -11.78704 -11.60075 -11.51684 -11.36680 -11.29496 -11.06783 -10.85949 -10.28623 -9.98892 -9.55978 -9.14876 -8.68684 -5.49533 -0.76593 0.21283 0.69021 1.09294 1.39577 1.55258 1.71715 1.89823 2.03199 2.53986 3.03289 3.19117 3.20913 3.32775 3.62974 3.67709 3.87128 3.87821 4.18434 4.29494 4.35753 4.37011 4.46370 4.51563 4.64271 4.67228 4.73063 4.78850 4.82839 4.91798 4.97733 5.01900 5.14925 5.18075 5.22310 5.27695 5.44931 5.50194 5.60573 6.04063 6.36412 6.75847 7.04736 7.35686 8.14798 8.82272 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.004534 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.197593 B = 6173.439039 C = 7012.493870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.070 4.070 3 Si 1.100 2.900 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.308 1.308 7 C -0.306 4.306 8 H 0.028 0.972 9 N -0.628 5.628 10 C 0.103 3.897 11 C -0.099 4.099 12 H 0.097 0.903 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.115 4.115 16 C 0.164 3.836 17 N -0.690 5.690 18 C 0.583 3.417 19 O -0.564 6.564 20 C -0.359 4.359 21 S 0.306 5.694 22 C -0.183 4.183 23 C -0.190 4.190 24 C 0.140 3.860 25 F -0.128 7.128 26 C 0.129 3.871 27 H 0.246 0.754 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.406 0.594 37 H 0.226 0.774 38 H 0.183 0.817 39 H 0.021 0.979 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.581 -10.417 17.214 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.924 3.076 4 H -0.192 1.192 5 H -0.185 1.185 6 H -0.236 1.236 7 C -0.435 4.435 8 H 0.046 0.954 9 N -0.354 5.354 10 C -0.021 4.021 11 C -0.120 4.120 12 H 0.115 0.885 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.154 4.154 16 C 0.076 3.924 17 N -0.341 5.341 18 C 0.371 3.629 19 O -0.444 6.444 20 C -0.480 4.480 21 S 0.573 5.427 22 C -0.321 4.321 23 C -0.220 4.220 24 C 0.104 3.896 25 F -0.106 7.106 26 C 0.002 3.998 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.242 0.758 37 H 0.242 0.758 38 H 0.200 0.800 39 H 0.039 0.961 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.322 -7.739 17.209 23.098 hybrid contribution -0.562 -3.516 -1.673 3.934 sum 12.760 -11.255 15.536 23.040 Atomic orbital electron populations 1.70984 1.07148 1.28371 1.53451 1.27272 0.96292 1.04293 0.98491 0.83407 0.74529 0.72040 0.77583 1.19193 1.18499 1.23644 1.19846 0.86128 0.94783 1.42692 0.95369 1.45542 1.07472 1.19796 1.62552 1.22588 0.94257 0.92395 0.92860 1.23020 0.98238 0.92226 0.98494 0.88500 1.22463 0.90864 0.97651 1.03778 1.22471 0.98819 0.94709 0.98604 1.22964 0.91554 1.00370 1.00517 1.22093 0.93771 0.86080 0.90452 1.45571 1.61258 1.04848 1.22387 1.17067 0.78417 0.82411 0.84987 1.90831 1.46723 1.83939 1.22950 1.24743 1.20010 0.96701 1.06547 1.82941 1.50080 1.03953 1.05754 1.25692 1.03718 0.98803 1.03859 1.20013 1.04996 1.03525 0.93471 1.17549 0.97412 0.90467 0.84156 1.91508 1.84329 1.88007 1.46780 1.22068 0.91108 0.91184 0.95451 0.94481 0.93001 0.92674 0.90757 0.88409 0.89301 0.90333 0.91152 0.92449 0.75763 0.75781 0.80020 0.96069 0.94479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.26 13.70 21.65 0.30 -61.97 16 2 C -0.07 -4.25 5.47 84.86 0.46 -3.78 16 3 Si 1.10 52.98 24.97 68.60 1.71 54.70 16 4 H -0.27 -11.46 6.76 99.48 0.67 -10.79 16 5 H -0.26 -11.48 5.93 99.48 0.59 -10.89 16 6 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 7 C -0.31 -18.58 10.63 84.03 0.89 -17.69 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 9 N -0.63 -31.70 3.21 -687.69 -2.20 -33.91 16 10 C 0.10 4.17 4.23 86.52 0.37 4.53 16 11 C -0.10 -3.01 3.67 -9.19 -0.03 -3.05 16 12 H 0.10 2.64 7.74 -2.39 -0.02 2.62 16 13 C -0.11 -2.38 6.36 31.61 0.20 -2.18 16 14 C -0.11 -2.20 6.90 31.85 0.22 -1.98 16 15 C -0.12 -3.36 5.75 32.39 0.19 -3.17 16 16 C 0.16 5.62 0.92 5.85 0.01 5.62 16 17 N -0.69 -22.29 5.29 -417.09 -2.21 -24.50 16 18 C 0.58 21.01 6.89 86.34 0.60 21.61 16 19 O -0.56 -24.78 13.76 -4.49 -0.06 -24.84 16 20 C -0.36 -10.30 6.45 24.06 0.16 -10.15 16 21 S 0.31 5.18 22.14 -56.49 -1.25 3.93 16 22 C -0.18 -2.23 10.91 66.80 0.73 -1.50 16 23 C -0.19 -3.33 10.15 21.12 0.21 -3.12 16 24 C 0.14 3.90 7.47 21.84 0.16 4.07 16 25 F -0.13 -4.35 16.43 44.97 0.74 -3.61 16 26 C 0.13 5.84 6.11 86.38 0.53 6.37 16 27 H 0.25 16.26 8.73 -92.70 -0.81 15.45 16 28 H 0.05 2.00 5.94 -2.39 -0.01 1.98 16 29 H 0.06 2.32 5.09 -2.39 -0.01 2.31 16 30 H 0.07 1.64 7.19 -2.39 -0.02 1.62 16 31 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 34 H 0.07 2.13 7.26 -2.38 -0.02 2.11 16 35 H 0.06 1.82 6.83 -2.39 -0.02 1.80 16 36 H 0.41 10.80 7.43 -92.71 -0.69 10.11 16 37 H 0.23 0.70 8.06 -2.91 -0.02 0.67 16 38 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.02 1.09 6.81 -2.39 -0.02 1.08 16 40 H 0.04 1.67 7.23 -2.39 -0.02 1.66 16 Total: -1.00 -82.84 330.08 1.93 -80.91 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.21 Total: 13.71 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.69 Total: -4.41 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -4.11 Total: -120.37 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.06 Total: -24.84 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.74 Total: -3.61 kcal Atomic # 14 Polarization: 52.98 SS G_CDS: 1.71 Total: 54.70 kcal Atomic # 16 Polarization: 5.18 SS G_CDS: -1.25 Total: 3.93 kcal Total: -82.84 1.93 -80.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098823243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.531 kcal (2) G-P(sol) polarization free energy of solvation -82.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds