Wall clock time and date at job start Tue Mar 31 2020 13:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00157 * 2 1 4 4 H 1.48500 * 109.46892 * 269.99772 * 3 2 1 5 5 H 1.48501 * 109.47111 * 29.99539 * 3 2 1 6 6 H 1.48503 * 109.47132 * 149.99856 * 3 2 1 7 7 C 1.38811 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99801 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.47206 * 126.70473 * 359.97438 * 9 7 2 11 11 C 1.55744 * 106.67811 * 210.99275 * 10 9 7 12 12 H 1.09004 * 112.38050 * 220.47476 * 11 10 9 13 13 C 1.54317 * 109.24152 * 95.05263 * 11 10 9 14 14 C 1.55062 * 103.93290 * 223.03768 * 13 11 10 15 15 C 1.55057 * 102.10704 * 40.06009 * 14 13 11 16 16 C 1.54318 * 103.93609 * 319.94090 * 15 14 13 17 17 N 1.46508 * 111.68719 * 262.79432 * 16 15 14 18 18 C 1.34771 * 120.00277 * 298.98464 * 17 16 15 19 19 O 1.21741 * 119.99755 * 0.02562 * 18 17 16 20 20 C 1.46344 * 120.00300 * 180.02562 * 18 17 16 21 21 C 1.36734 * 125.43980 * 180.02562 * 20 18 17 22 22 C 1.37343 * 113.33051 * 179.97438 * 21 20 18 23 23 C 1.34203 * 115.04671 * 359.97438 * 22 21 20 24 24 F 1.35097 * 124.53699 * 179.97438 * 23 22 21 25 25 S 1.70617 * 110.91959 * 359.76093 * 23 22 21 26 26 C 1.47222 * 126.69843 * 180.02562 * 9 7 2 27 27 H 0.97001 * 119.99430 * 0.02562 * 1 2 3 28 28 H 1.08998 * 110.07705 * 330.50891 * 10 9 7 29 29 H 1.08998 * 110.07615 * 91.99734 * 10 9 7 30 30 H 1.08998 * 110.53280 * 104.42944 * 13 11 10 31 31 H 1.09000 * 110.53717 * 341.65187 * 13 11 10 32 32 H 1.08996 * 110.90165 * 281.85332 * 14 13 11 33 33 H 1.09004 * 110.89792 * 158.25720 * 14 13 11 34 34 H 1.09002 * 110.53480 * 78.55613 * 15 14 13 35 35 H 1.09000 * 110.52871 * 201.32307 * 15 14 13 36 36 H 0.96997 * 119.99579 * 118.98708 * 17 16 15 37 37 H 1.08001 * 123.33383 * 359.93622 * 21 20 18 38 38 H 1.08001 * 122.46916 * 179.97438 * 22 21 20 39 39 H 1.08996 * 110.07376 * 29.48797 * 26 9 7 40 40 H 1.08992 * 110.07013 * 267.94481 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1366 -2.5598 0.0005 11 6 -0.4313 -3.8822 0.7688 12 1 -1.2220 -4.4675 0.2993 13 6 -0.7405 -3.5547 2.2448 14 6 0.0385 -4.6356 3.0381 15 6 1.3654 -4.7305 2.2415 16 6 0.9210 -4.6371 0.7667 17 7 0.8032 -5.9617 0.1518 18 6 1.8835 -6.7628 0.0649 19 8 2.9571 -6.3859 0.4977 20 6 1.7659 -8.0857 -0.5498 21 6 2.7849 -8.9858 -0.6952 22 6 2.3969 -10.1525 -1.3072 23 6 1.1014 -10.2092 -1.6528 24 9 0.5171 -11.2628 -2.2640 25 16 0.2899 -8.7747 -1.2116 26 6 1.9077 -3.7402 0.0016 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6122 -1.7185 0.5045 29 1 -0.5040 -2.6389 -1.0226 30 1 -1.8101 -3.6352 2.4383 31 1 -0.3787 -2.5585 2.4994 32 1 -0.4928 -5.5871 3.0235 33 1 0.2220 -4.3096 4.0620 34 1 2.0242 -3.9001 2.4957 35 1 1.8587 -5.6835 2.4327 36 1 -0.0523 -6.2620 -0.1927 37 1 3.7950 -8.7976 -0.3623 38 1 3.0837 -10.9642 -1.4963 39 1 2.8737 -3.7312 0.5063 40 1 2.0227 -4.0988 -1.0212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099181412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:53 Heat of formation + Delta-G solvation = -13.672303 kcal Electronic energy + Delta-G solvation = -25438.212532 eV Core-core repulsion = 21680.965967 eV Total energy + Delta-G solvation = -3757.246565 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.42017 -40.31506 -38.59249 -37.30814 -34.45075 -33.50977 -31.46263 -30.01631 -29.16626 -27.64926 -25.29488 -24.64377 -24.28262 -22.14573 -20.59182 -20.46478 -19.81621 -18.89612 -18.62839 -17.23874 -16.57760 -16.43433 -16.31908 -15.63271 -14.92722 -14.80614 -14.73251 -14.38462 -14.06146 -13.66444 -13.50427 -13.38382 -13.05921 -12.77857 -12.48223 -12.35547 -11.88032 -11.37062 -11.32843 -11.05107 -10.92656 -10.68905 -10.59841 -10.31761 -10.25211 -10.11094 -9.99687 -9.93560 -9.76958 -9.56135 -9.11625 -9.04097 -8.79100 -8.63455 -6.86980 -5.65401 -3.09718 0.05539 0.66416 1.29968 1.96025 3.16069 3.22119 3.40385 3.45729 3.47452 3.96148 4.47459 4.67412 4.91784 4.95288 4.98696 5.12924 5.33870 5.47969 5.48561 5.62948 5.68481 5.83434 5.85790 5.86973 5.99126 6.08948 6.10930 6.19941 6.30655 6.35021 6.53654 6.62251 6.75990 6.80279 6.94286 7.07459 7.39908 7.61189 7.61687 7.82432 8.26120 8.39984 9.20619 9.80646 10.47608 11.35994 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.003234 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.812302 B = 8654.686474 C = 8948.447848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.916 3.084 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.141 3.859 11 C -0.117 4.117 12 H 0.071 0.929 13 C -0.107 4.107 14 C -0.125 4.125 15 C -0.112 4.112 16 C 0.157 3.843 17 N -0.704 5.704 18 C 0.587 3.413 19 O -0.516 6.516 20 C -0.248 4.248 21 C -0.042 4.042 22 C -0.179 4.179 23 C -0.028 4.028 24 F -0.101 7.101 25 S 0.222 5.778 26 C 0.141 3.859 27 H 0.252 0.748 28 H 0.130 0.870 29 H 0.004 0.996 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.392 0.608 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.053 0.947 40 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.996 -19.394 0.416 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.747 3.253 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.016 3.984 11 C -0.138 4.138 12 H 0.089 0.911 13 C -0.145 4.145 14 C -0.163 4.163 15 C -0.151 4.151 16 C 0.071 3.929 17 N -0.354 5.354 18 C 0.372 3.628 19 O -0.393 6.393 20 C -0.369 4.369 21 C -0.074 4.074 22 C -0.212 4.212 23 C -0.166 4.166 24 F -0.080 7.080 25 S 0.486 5.514 26 C 0.013 3.987 27 H 0.063 0.937 28 H 0.147 0.853 29 H 0.022 0.978 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.182 0.818 38 H 0.175 0.825 39 H 0.072 0.928 40 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -2.761 -18.379 0.563 18.594 hybrid contribution 1.345 -0.433 -0.490 1.495 sum -1.416 -18.812 0.073 18.866 Atomic orbital electron populations 1.69583 1.04859 1.24698 1.58000 1.24757 0.95722 0.97654 1.02558 0.86039 0.78555 0.83173 0.77572 1.21671 1.21650 1.20654 1.19112 0.90544 0.82073 1.42590 0.90292 1.44426 1.01772 0.99562 1.85830 1.22384 0.85633 0.94165 0.96265 1.23402 0.93660 0.99050 0.97645 0.91100 1.22413 0.98806 0.99740 0.93546 1.22612 0.96507 0.98536 0.98654 1.22667 0.97182 1.02286 0.92933 1.21946 0.97747 0.80054 0.93155 1.46003 1.10846 1.17370 1.61165 1.16749 0.84792 0.82260 0.79017 1.90870 1.26861 1.73802 1.47749 1.24743 0.97392 1.01304 1.13497 1.20500 1.00533 0.90375 0.95995 1.20297 0.94771 1.01399 1.04746 1.21945 0.96128 0.92006 1.06530 1.91532 1.83411 1.52791 1.80249 1.83456 1.09645 1.04835 1.53436 1.21530 0.95108 0.85898 0.96181 0.93659 0.85269 0.97825 0.92471 0.90021 0.92508 0.92022 0.90123 0.91706 0.77373 0.81754 0.82500 0.92836 0.96779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.05 10.08 55.49 0.56 -25.49 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.22 -5.95 10.34 -15.06 -0.16 -6.10 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.59 -15.03 3.39 -169.93 -0.58 -15.61 16 10 C 0.14 3.31 5.62 -2.19 -0.01 3.29 16 11 C -0.12 -2.11 3.79 -87.48 -0.33 -2.44 16 12 H 0.07 1.10 7.71 -51.93 -0.40 0.70 16 13 C -0.11 -1.80 6.27 -24.95 -0.16 -1.96 16 14 C -0.13 -1.88 6.92 -24.55 -0.17 -2.05 16 15 C -0.11 -1.94 5.49 -24.95 -0.14 -2.08 16 16 C 0.16 2.81 0.93 -129.76 -0.12 2.69 16 17 N -0.70 -10.47 5.19 -47.09 -0.24 -10.72 16 18 C 0.59 8.94 7.06 -13.00 -0.09 8.85 16 19 O -0.52 -9.50 14.73 5.15 0.08 -9.42 16 20 C -0.25 -2.97 6.44 -36.87 -0.24 -3.20 16 21 C -0.04 -0.44 10.00 -40.45 -0.40 -0.85 16 22 C -0.18 -1.62 10.16 -41.33 -0.42 -2.04 16 23 C -0.03 -0.27 8.10 29.31 0.24 -0.04 16 24 F -0.10 -1.01 17.32 2.25 0.04 -0.97 16 25 S 0.22 2.09 22.15 -107.50 -2.38 -0.29 16 26 C 0.14 3.11 5.23 -3.27 -0.02 3.09 16 27 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.13 3.37 4.93 -51.93 -0.26 3.11 16 29 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 1.61 7.57 -51.93 -0.39 1.22 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 35 H 0.06 1.11 6.64 -51.93 -0.34 0.76 16 36 H 0.39 4.82 7.40 -40.82 -0.30 4.52 16 37 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 40 H 0.01 0.33 8.06 -51.93 -0.42 -0.09 16 LS Contribution 337.79 15.07 5.09 5.09 Total: -1.00 -30.28 337.79 -9.55 -39.84 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.98 Total: 3.96 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.11 Total: -3.25 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.26 Total: -51.81 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.38 Total: -0.29 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.28 -9.55 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099181412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.164 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds