Wall clock time and date at job start Tue Mar 31 2020 13:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00157 * 2 1 4 4 H 1.48500 * 109.46892 * 269.99772 * 3 2 1 5 5 H 1.48501 * 109.47111 * 29.99539 * 3 2 1 6 6 H 1.48503 * 109.47132 * 149.99856 * 3 2 1 7 7 C 1.38811 * 119.99603 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99801 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.47206 * 126.70473 * 359.97438 * 9 7 2 11 11 C 1.55744 * 106.67811 * 210.99275 * 10 9 7 12 12 H 1.09004 * 112.38050 * 220.47476 * 11 10 9 13 13 C 1.54317 * 109.24152 * 95.05263 * 11 10 9 14 14 C 1.55062 * 103.93290 * 223.03768 * 13 11 10 15 15 C 1.55057 * 102.10704 * 40.06009 * 14 13 11 16 16 C 1.54318 * 103.93609 * 319.94090 * 15 14 13 17 17 N 1.46508 * 111.68719 * 262.79432 * 16 15 14 18 18 C 1.34771 * 120.00277 * 298.98464 * 17 16 15 19 19 O 1.21741 * 119.99755 * 0.02562 * 18 17 16 20 20 C 1.46344 * 120.00300 * 180.02562 * 18 17 16 21 21 C 1.36734 * 125.43980 * 180.02562 * 20 18 17 22 22 C 1.37343 * 113.33051 * 179.97438 * 21 20 18 23 23 C 1.34203 * 115.04671 * 359.97438 * 22 21 20 24 24 F 1.35097 * 124.53699 * 179.97438 * 23 22 21 25 25 S 1.70617 * 110.91959 * 359.76093 * 23 22 21 26 26 C 1.47222 * 126.69843 * 180.02562 * 9 7 2 27 27 H 0.97001 * 119.99430 * 0.02562 * 1 2 3 28 28 H 1.08998 * 110.07705 * 330.50891 * 10 9 7 29 29 H 1.08998 * 110.07615 * 91.99734 * 10 9 7 30 30 H 1.08998 * 110.53280 * 104.42944 * 13 11 10 31 31 H 1.09000 * 110.53717 * 341.65187 * 13 11 10 32 32 H 1.08996 * 110.90165 * 281.85332 * 14 13 11 33 33 H 1.09004 * 110.89792 * 158.25720 * 14 13 11 34 34 H 1.09002 * 110.53480 * 78.55613 * 15 14 13 35 35 H 1.09000 * 110.52871 * 201.32307 * 15 14 13 36 36 H 0.96997 * 119.99579 * 118.98708 * 17 16 15 37 37 H 1.08001 * 123.33383 * 359.93622 * 21 20 18 38 38 H 1.08001 * 122.46916 * 179.97438 * 22 21 20 39 39 H 1.08996 * 110.07376 * 29.48797 * 26 9 7 40 40 H 1.08992 * 110.07013 * 267.94481 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1366 -2.5598 0.0005 11 6 -0.4313 -3.8822 0.7688 12 1 -1.2220 -4.4675 0.2993 13 6 -0.7405 -3.5547 2.2448 14 6 0.0385 -4.6356 3.0381 15 6 1.3654 -4.7305 2.2415 16 6 0.9210 -4.6371 0.7667 17 7 0.8032 -5.9617 0.1518 18 6 1.8835 -6.7628 0.0649 19 8 2.9571 -6.3859 0.4977 20 6 1.7659 -8.0857 -0.5498 21 6 2.7849 -8.9858 -0.6952 22 6 2.3969 -10.1525 -1.3072 23 6 1.1014 -10.2092 -1.6528 24 9 0.5171 -11.2628 -2.2640 25 16 0.2899 -8.7747 -1.2116 26 6 1.9077 -3.7402 0.0016 27 1 -0.4849 0.8401 -0.0004 28 1 -0.6122 -1.7185 0.5045 29 1 -0.5040 -2.6389 -1.0226 30 1 -1.8101 -3.6352 2.4383 31 1 -0.3787 -2.5585 2.4994 32 1 -0.4928 -5.5871 3.0235 33 1 0.2220 -4.3096 4.0620 34 1 2.0242 -3.9001 2.4957 35 1 1.8587 -5.6835 2.4327 36 1 -0.0523 -6.2620 -0.1927 37 1 3.7950 -8.7976 -0.3623 38 1 3.0837 -10.9642 -1.4963 39 1 2.8737 -3.7312 0.5063 40 1 2.0227 -4.0988 -1.0212 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099181412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:52 Heat of formation + Delta-G solvation = -32.001289 kcal Electronic energy + Delta-G solvation = -25439.007337 eV Core-core repulsion = 21680.965967 eV Total energy + Delta-G solvation = -3758.041370 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.19286 -41.68261 -39.83464 -38.31342 -36.25029 -34.81984 -33.41683 -31.25691 -30.55140 -29.19818 -26.59968 -26.29343 -25.68890 -23.29325 -22.29888 -21.70590 -20.81268 -20.28094 -19.75422 -18.98937 -17.76823 -17.44127 -17.10098 -17.00676 -16.67311 -16.17016 -15.69083 -15.55570 -15.45835 -15.31347 -14.97120 -14.75031 -14.51826 -14.21823 -13.60127 -13.47597 -13.17904 -13.07463 -12.82803 -12.75312 -12.20169 -12.14386 -12.07363 -12.03387 -11.85600 -11.72923 -11.67408 -11.57386 -11.42668 -11.03161 -10.74849 -10.21352 -9.81423 -9.80385 -8.91491 -7.76023 -5.23940 -0.79131 -0.11111 0.49277 1.13802 1.47089 1.48264 1.57311 1.96873 2.09402 2.49248 3.19912 3.30233 3.39886 3.64572 3.76442 3.85072 3.88756 4.14379 4.26369 4.40231 4.40819 4.49029 4.58573 4.68721 4.73395 4.79208 4.85562 4.92735 4.96238 5.03440 5.09524 5.12284 5.22808 5.28302 5.41832 5.47481 5.58945 5.68473 5.82273 6.37825 6.43803 7.07734 7.12679 7.74795 8.41713 9.22461 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.003234 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.812302 B = 8654.686474 C = 8948.447848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.058 4.058 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.611 5.611 10 C 0.142 3.858 11 C -0.104 4.104 12 H 0.106 0.894 13 C -0.104 4.104 14 C -0.111 4.111 15 C -0.109 4.109 16 C 0.170 3.830 17 N -0.697 5.697 18 C 0.588 3.412 19 O -0.556 6.556 20 C -0.281 4.281 21 C -0.033 4.033 22 C -0.176 4.176 23 C -0.031 4.031 24 F -0.101 7.101 25 S 0.267 5.733 26 C 0.143 3.857 27 H 0.250 0.750 28 H 0.104 0.896 29 H -0.019 1.019 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.408 0.592 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.032 0.968 40 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 -21.626 0.709 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.251 4.251 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.336 5.336 10 C 0.016 3.984 11 C -0.124 4.124 12 H 0.124 0.876 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.148 4.148 16 C 0.082 3.918 17 N -0.348 5.348 18 C 0.375 3.625 19 O -0.436 6.436 20 C -0.402 4.402 21 C -0.066 4.066 22 C -0.209 4.209 23 C -0.169 4.169 24 F -0.080 7.080 25 S 0.532 5.468 26 C 0.016 3.984 27 H 0.060 0.940 28 H 0.122 0.878 29 H -0.001 1.001 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.245 0.755 37 H 0.185 0.815 38 H 0.199 0.801 39 H 0.051 0.949 40 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -3.869 -20.651 0.844 21.027 hybrid contribution 1.711 0.197 -0.680 1.851 sum -2.159 -20.454 0.165 20.568 Atomic orbital electron populations 1.69822 1.05865 1.25077 1.58227 1.25527 0.96673 1.00505 1.02374 0.85068 0.77609 0.79157 0.77409 1.21469 1.21361 1.19908 1.19369 0.90717 0.83566 1.43153 0.90928 1.44639 1.02865 1.00117 1.85940 1.22249 0.84375 0.96388 0.95378 1.23320 0.94588 0.96406 0.98132 0.87558 1.22334 1.00798 0.98407 0.92621 1.22571 0.94507 0.99256 0.98453 1.22568 0.98252 1.01121 0.92854 1.21558 0.96329 0.80839 0.93025 1.45786 1.11834 1.16030 1.61142 1.17120 0.83977 0.83157 0.78202 1.90851 1.28246 1.75002 1.49509 1.24418 0.99712 1.00341 1.15725 1.20664 1.00469 0.90402 0.95039 1.20459 0.95010 1.01431 1.03953 1.22128 0.96548 0.92063 1.06143 1.91541 1.83428 1.52808 1.80209 1.83249 1.07377 1.03915 1.52243 1.21549 0.95513 0.85633 0.95715 0.94000 0.87819 1.00132 0.89447 0.93774 0.89394 0.90784 0.93244 0.91366 0.75544 0.81533 0.80063 0.94931 0.98197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.67 10.08 21.65 0.22 -54.45 16 2 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 3 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.24 -13.80 10.34 84.03 0.87 -12.93 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.61 -32.44 3.39 -691.54 -2.35 -34.79 16 10 C 0.14 6.83 5.62 87.19 0.49 7.32 16 11 C -0.10 -3.66 3.79 -8.76 -0.03 -3.69 16 12 H 0.11 2.99 7.71 -2.39 -0.02 2.97 16 13 C -0.10 -3.32 6.27 31.75 0.20 -3.12 16 14 C -0.11 -3.03 6.92 32.00 0.22 -2.81 16 15 C -0.11 -3.75 5.49 31.75 0.17 -3.57 16 16 C 0.17 6.05 0.93 4.93 0.00 6.05 16 17 N -0.70 -19.85 5.19 -421.10 -2.19 -22.04 16 18 C 0.59 17.52 7.06 86.35 0.61 18.13 16 19 O -0.56 -20.80 14.73 -4.48 -0.07 -20.86 16 20 C -0.28 -6.25 6.44 24.03 0.15 -6.10 16 21 C -0.03 -0.63 10.00 21.71 0.22 -0.41 16 22 C -0.18 -2.69 10.16 21.14 0.21 -2.48 16 23 C -0.03 -0.51 8.10 66.90 0.54 0.04 16 24 F -0.10 -1.73 17.32 44.97 0.78 -0.95 16 25 S 0.27 4.30 22.15 -56.49 -1.25 3.05 16 26 C 0.14 6.61 5.23 86.49 0.45 7.06 16 27 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.10 5.60 4.93 -2.39 -0.01 5.59 16 29 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.75 7.57 -2.39 -0.02 1.74 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 35 H 0.07 2.29 6.64 -2.39 -0.02 2.27 16 36 H 0.41 9.00 7.40 -92.71 -0.69 8.31 16 37 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16 39 H 0.03 1.60 7.51 -2.39 -0.02 1.59 16 40 H 0.00 0.01 8.06 -2.39 -0.02 0.00 16 Total: -1.00 -68.82 337.79 2.15 -66.67 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.40 Total: 14.76 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 4.58 Total: 0.66 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -4.31 Total: -111.28 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.07 Total: -20.86 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.78 Total: -0.95 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.25 Total: 3.05 kcal Total: -68.82 2.15 -66.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099181412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.666 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds