Wall clock time and date at job start Tue Mar 31 2020 13:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31295 * 1 3 3 Si 1.86803 * 119.99610 * 2 1 4 4 H 1.48494 * 109.47248 * 274.97197 * 3 2 1 5 5 H 1.48500 * 109.47261 * 34.97680 * 3 2 1 6 6 H 1.48506 * 109.46671 * 154.97787 * 3 2 1 7 7 C 1.38989 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99724 * 174.04394 * 7 2 1 9 9 N 1.37314 * 119.99795 * 354.31613 * 7 2 1 10 10 C 1.36492 * 126.06908 * 185.48980 * 9 7 2 11 11 C 1.35695 * 107.50744 * 180.02562 * 10 9 7 12 12 N 1.40539 * 126.08146 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99502 * 180.02562 * 12 11 10 14 14 O 1.21602 * 120.00396 * 359.97438 * 13 12 11 15 15 C 1.47679 * 119.99764 * 180.02562 * 13 12 11 16 16 C 1.41565 * 126.43852 * 179.71271 * 15 13 12 17 17 C 1.35333 * 105.55845 * 179.87192 * 16 15 13 18 18 N 1.35910 * 107.11273 * 0.37841 * 17 16 15 19 19 C 1.39910 * 124.96213 * 179.74567 * 18 17 16 20 20 C 1.39326 * 120.85658 * 359.70106 * 19 18 17 21 21 C 1.38016 * 119.07844 * 179.70312 * 20 19 18 22 22 N 1.31933 * 120.83151 * 0.58218 * 21 20 19 23 23 C 1.31928 * 121.88561 * 359.71027 * 22 21 20 24 24 C 1.38014 * 120.83529 * 359.97438 * 23 22 21 25 25 N 1.28484 * 110.07562 * 359.74829 * 18 17 16 26 26 C 1.40657 * 107.83096 * 359.97438 * 11 10 9 27 27 N 1.30908 * 108.38791 * 359.72070 * 26 11 10 28 28 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 29 29 H 1.08000 * 126.24516 * 359.96122 * 10 9 7 30 30 H 0.97000 * 120.00013 * 359.97438 * 12 11 10 31 31 H 1.08002 * 127.22103 * 0.02562 * 16 15 13 32 32 H 1.08003 * 126.44208 * 180.10170 * 17 16 15 33 33 H 1.08005 * 120.45953 * 359.97438 * 20 19 18 34 34 H 1.07998 * 119.57835 * 180.29192 * 21 20 19 35 35 H 1.08001 * 119.57847 * 180.02562 * 23 22 21 36 36 H 1.07999 * 120.45922 * 180.02562 * 24 23 22 37 37 H 1.07997 * 125.80616 * 180.02562 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3892 2.1072 -1.3947 5 1 1.5008 2.6201 0.8026 6 1 3.5931 1.4121 0.5922 7 6 2.0079 -1.2037 0.0005 8 1 3.0836 -1.2061 -0.0965 9 7 1.3264 -2.3899 0.1188 10 6 1.8854 -3.6293 0.2390 11 6 0.8720 -4.5271 0.3293 12 7 1.0091 -5.9191 0.4659 13 6 -0.0868 -6.6996 0.5443 14 8 -1.1942 -6.1995 0.4974 15 6 0.0573 -8.1623 0.6884 16 6 -0.9941 -9.1050 0.7885 17 6 -0.3907 -10.3111 0.9013 18 7 0.9503 -10.0912 0.8780 19 6 1.9279 -11.0873 0.9754 20 6 1.5716 -12.4270 1.1146 21 6 2.5661 -13.3801 1.2012 22 7 3.8388 -13.0344 1.1651 23 6 4.2161 -11.7764 1.0402 24 6 3.2828 -10.7645 0.9412 25 7 1.1890 -8.8349 0.7535 26 6 -0.3401 -3.8166 0.2631 27 7 -0.0657 -2.5421 0.1440 28 1 -0.4850 0.8400 -0.0004 29 1 2.9415 -3.8544 0.2576 30 1 1.8925 -6.3181 0.5029 31 1 -2.0552 -8.9040 0.7749 32 1 -0.8824 -11.2680 0.9969 33 1 0.5316 -12.7162 1.1498 34 1 2.2990 -14.4214 1.3044 35 1 5.2685 -11.5355 1.0144 36 1 3.5983 -9.7368 0.8387 37 1 -1.3289 -4.2484 0.3083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116800515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:50 Heat of formation + Delta-G solvation = 183.447694 kcal Electronic energy + Delta-G solvation = -24902.530180 eV Core-core repulsion = 21070.600140 eV Total energy + Delta-G solvation = -3831.930039 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.17631 -40.47340 -39.80900 -38.38299 -34.73011 -34.24588 -33.15672 -32.12473 -30.92417 -30.68698 -30.15474 -27.83385 -25.56080 -24.55062 -24.30620 -22.63237 -21.50586 -20.95710 -20.05278 -19.34927 -19.00413 -17.59190 -16.89031 -16.49273 -16.47859 -16.34922 -15.48197 -15.32901 -15.18545 -14.56741 -14.30979 -14.17328 -14.09165 -13.93407 -13.72443 -13.17241 -13.12411 -12.84171 -12.27849 -11.68526 -11.43982 -11.27814 -11.16687 -11.09568 -10.96146 -10.52436 -10.16838 -10.15025 -9.79569 -9.55577 -9.45783 -9.16631 -8.97184 -8.80946 -8.05456 -6.69295 -6.55967 -4.22075 0.18439 0.53420 1.70622 1.92538 1.99700 2.95690 3.05751 3.11267 3.27236 3.39705 3.51890 3.80298 3.83139 3.90375 3.91705 4.17056 4.43413 4.46498 4.47599 4.59829 4.78931 4.90323 5.01886 5.13214 5.18779 5.23744 5.37802 5.50843 5.58089 5.98345 6.14469 6.26216 6.46893 6.51461 6.89702 6.95858 7.09745 7.23234 7.40283 7.56187 7.86481 8.18675 8.27505 8.61460 8.82118 9.38075 9.66923 10.40298 Molecular weight = 324.11amu Principal moments of inertia in cm(-1) A = 0.025550 B = 0.002260 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.626070 B =12383.689860 C =13465.733732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.080 4.080 11 C -0.062 4.062 12 N -0.604 5.604 13 C 0.581 3.419 14 O -0.524 6.524 15 C 0.025 3.975 16 C -0.163 4.163 17 C -0.018 4.018 18 N -0.248 5.248 19 C 0.192 3.808 20 C -0.188 4.188 21 C 0.125 3.875 22 N -0.491 5.491 23 C 0.125 3.875 24 C -0.167 4.167 25 N -0.264 5.264 26 C -0.030 4.030 27 N -0.261 5.261 28 H 0.275 0.725 29 H 0.147 0.853 30 H 0.403 0.597 31 H 0.173 0.827 32 H 0.187 0.813 33 H 0.146 0.854 34 H 0.167 0.833 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -23.679 2.311 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.231 4.231 11 C -0.167 4.167 12 N -0.246 5.246 13 C 0.365 3.635 14 O -0.399 6.399 15 C -0.138 4.138 16 C -0.190 4.190 17 C -0.156 4.156 18 N -0.030 5.030 19 C 0.092 3.908 20 C -0.211 4.211 21 C -0.032 4.032 22 N -0.200 5.200 23 C -0.032 4.032 24 C -0.189 4.189 25 N -0.096 5.096 26 C -0.206 4.206 27 N -0.091 5.091 28 H 0.086 0.914 29 H 0.164 0.836 30 H 0.237 0.763 31 H 0.190 0.810 32 H 0.204 0.796 33 H 0.163 0.837 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.172 0.828 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.190 -22.512 2.218 23.209 hybrid contribution -0.316 0.126 0.041 0.343 sum 4.873 -22.386 2.259 23.021 Atomic orbital electron populations 1.70221 1.06160 1.28008 1.35120 1.25651 0.95695 1.00292 0.95469 0.85819 0.79516 0.80034 0.78829 1.19664 1.20038 1.18737 1.19878 0.92145 0.80661 1.52821 0.86575 1.44556 1.04022 1.03678 1.38643 1.21264 0.96861 0.85707 1.19285 1.17254 0.94477 0.81294 1.23700 1.42323 1.08251 1.05147 1.68829 1.16611 0.84806 0.82592 0.79530 1.90711 1.25355 1.72737 1.51097 1.22394 0.89628 0.95516 1.06308 1.21939 1.01142 0.89950 1.06014 1.23049 0.82728 1.01410 1.08389 1.42637 1.04892 1.03938 1.51548 1.17927 0.88046 0.86601 0.98177 1.21911 1.02716 0.90798 1.05641 1.22699 0.87149 0.99852 0.93511 1.67722 1.19308 1.20416 1.12561 1.22812 1.00413 0.86969 0.93005 1.22078 0.90851 1.03249 1.02722 1.73566 1.26729 0.89815 1.19496 1.24131 0.97969 0.90881 1.07581 1.78255 0.90259 1.15007 1.25628 0.91446 0.83578 0.76327 0.81000 0.79611 0.83652 0.81553 0.81452 0.82780 0.80607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.55 11.83 55.50 0.66 -20.89 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.97 29.56 -169.99 -5.02 13.95 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.32 -8.58 10.24 -14.82 -0.15 -8.73 16 8 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 9 N -0.14 -3.92 3.74 -11.41 -0.04 -3.96 16 10 C -0.08 -1.91 11.49 -16.39 -0.19 -2.10 16 11 C -0.06 -1.46 6.90 -83.86 -0.58 -2.03 16 12 N -0.60 -11.61 5.46 -10.90 -0.06 -11.67 16 13 C 0.58 11.05 7.79 -12.41 -0.10 10.96 16 14 O -0.52 -11.52 14.07 5.28 0.07 -11.45 16 15 C 0.03 0.39 7.13 -82.75 -0.59 -0.20 16 16 C -0.16 -1.99 10.80 -39.35 -0.42 -2.42 16 17 C -0.02 -0.17 10.82 -16.78 -0.18 -0.35 16 18 N -0.25 -2.76 3.51 -10.37 -0.04 -2.79 16 19 C 0.19 1.76 6.70 -83.36 -0.56 1.20 16 20 C -0.19 -1.20 9.50 -39.26 -0.37 -1.57 16 21 C 0.13 0.78 11.17 -17.59 -0.20 0.58 16 22 N -0.49 -4.01 10.36 -13.32 -0.14 -4.15 16 23 C 0.12 0.92 11.17 -17.59 -0.20 0.72 16 24 C -0.17 -1.43 9.67 -39.26 -0.38 -1.81 16 25 N -0.26 -3.61 10.94 33.43 0.37 -3.24 16 26 C -0.03 -0.80 10.85 -17.03 -0.18 -0.98 16 27 N -0.26 -7.63 10.41 30.80 0.32 -7.31 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 30 H 0.40 6.49 8.54 -40.82 -0.35 6.14 16 31 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.19 0.90 7.04 -52.48 -0.37 0.53 16 33 H 0.15 0.52 6.78 -52.48 -0.36 0.17 16 34 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.15 1.31 7.74 -52.49 -0.41 0.90 16 37 H 0.18 4.61 5.91 -52.49 -0.31 4.30 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -35.47 335.33 -6.06 -41.52 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -3.03 Total: 10.58 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -4.20 Total: -5.64 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 1.07 Total: -54.02 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.47 -6.06 -41.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116800515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.972 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds